3huh - Revision history

OCA at 10:01, 21 February 2024

2024-02-21T10:01:53Z

←Older revision		Revision as of 10:01, 21 February 2024
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	==The structure of biphenyl-2,3-diol 1,2-dioxygenase iii-related protein from salmonella typhimurium==		==The structure of biphenyl-2,3-diol 1,2-dioxygenase iii-related protein from salmonella typhimurium==
-	<StructureSection load='3huh' size='340' side='right'caption='[[3huh]]' scene=''>	+	<StructureSection load='3huh' size='340' side='right'caption='[[3huh]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HUH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HUH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3huh]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HUH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HUH FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3huh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3huh OCA], [https://pdbe.org/3huh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3huh RCSB], [https://www.ebi.ac.uk/pdbsum/3huh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3huh ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3huh TOPSAN]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.5Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3huh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3huh OCA], [https://pdbe.org/3huh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3huh RCSB], [https://www.ebi.ac.uk/pdbsum/3huh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3huh ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3huh TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/VIR17_SALTY VIR17_SALTY] Is critically involved in promoting the replication of S.typhimurium cells inside host macrophages, suggesting a role in the establishment of bacterial colonization within macrophages. May be involved in the biosynthesis and modification of the peptidoglycan layer of the cell wall.<ref>PMID:16893888</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 16:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3huh ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3huh ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Dioxygenase 3D structures\|Dioxygenase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
	[[Category: Almo SC]]		[[Category: Almo SC]]
	[[Category: Burley SK]]		[[Category: Burley SK]]

OCA at 11:57, 30 March 2022

2022-03-30T11:57:41Z

←Older revision		Revision as of 11:57, 30 March 2022
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	==The structure of biphenyl-2,3-diol 1,2-dioxygenase iii-related protein from salmonella typhimurium==		==The structure of biphenyl-2,3-diol 1,2-dioxygenase iii-related protein from salmonella typhimurium==
-	<StructureSection load='3huh' size='340' side='right' caption='[[3huh]]~~, [[Resolution\|resolution]] 1.50Å~~' scene=''>	+	<StructureSection load='3huh' size='340' side='right'caption='[[3huh]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[3huh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_typhimurium"_loeffler_1892 "bacillus typhimurium" loeffler 1892].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HUH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3HUH FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HUH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HUH FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STM3117 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 "Bacillus typhimurium" Loeffler 1892])</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3huh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3huh OCA], [https://pdbe.org/3huh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3huh RCSB], [https://www.ebi.ac.uk/pdbsum/3huh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3huh ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3huh TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3huh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3huh OCA], [~~http~~://pdbe.org/3huh PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3huh RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3huh PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3huh ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/3huh TOPSAN]</span></td></tr>	+
	</table>		</table>
-	== Function ==
-	[[http://www.uniprot.org/uniprot/VIR17_SALTY VIR17_SALTY]] Is critically involved in promoting the replication of S.typhimurium cells inside host macrophages, suggesting a role in the establishment of bacterial colonization within macrophages. May be involved in the biosynthesis and modification of the peptidoglycan layer of the cell wall.<ref>PMID:16893888</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 16:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3huh ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3huh ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus typhimurium loeffler 1892~~]]	+	[[Category: Large Structures]]
-	[[Category: Almo~~, S C~~]]	+	[[Category: Almo SC]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Burley SK]]
-	[[Category: Fedorov~~, A A~~]]	+	[[Category: Fedorov AA]]
-	[[Category: Fedorov~~, E V]]~~	+	[[Category: Fedorov EV]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Sauder JM]]
-	[[Category: Sauder~~, J M~~]]	+	[[Category: Toro R]]
-	[[Category: Toro, R]]	+
-	~~[[Category: Dioxygenase]]~~	+
-	~~[[Category: Nysgrc]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Target 13955a1bct15p1]]~~	+
-	~~[[Category: Viral protein]]~~	+
-	~~[[Category: Virulence~~]]	+

OCA at 08:06, 12 December 2018

2018-12-12T08:06:13Z

←Older revision		Revision as of 08:06, 12 December 2018
Line 1:		Line 1:
		+
	==The structure of biphenyl-2,3-diol 1,2-dioxygenase iii-related protein from salmonella typhimurium==		==The structure of biphenyl-2,3-diol 1,2-dioxygenase iii-related protein from salmonella typhimurium==
	<StructureSection load='3huh' size='340' side='right' caption='[[3huh]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='3huh' size='340' side='right' caption='[[3huh]], [[Resolution\|resolution]] 1.50Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[3huh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_typhimurium"_loeffler_1892 "bacillus typhimurium" loeffler 1892]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HUH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HUH FirstGlance]. <br>		<table><tr><td colspan='2'>[[3huh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_typhimurium"_loeffler_1892 "bacillus typhimurium" loeffler 1892]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HUH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HUH FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STM3117 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 "Bacillus typhimurium" Loeffler 1892])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STM3117 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 "Bacillus typhimurium" Loeffler 1892])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3huh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3huh OCA], [http://pdbe.org/3huh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3huh RCSB], [http://www.ebi.ac.uk/pdbsum/3huh PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3huh TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3huh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3huh OCA], [http://pdbe.org/3huh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3huh RCSB], [http://www.ebi.ac.uk/pdbsum/3huh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3huh ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3huh TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hu/3huh_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hu/3huh_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 18:44, 8 February 2016

2016-02-08T18:44:42Z

←Older revision		Revision as of 18:44, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='3huh' size='340' side='right' caption='[[3huh]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='3huh' size='340' side='right' caption='[[3huh]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3huh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar~~ typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HUH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HUH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3huh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_typhimurium"_loeffler_1892 "bacillus typhimurium" loeffler 1892]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HUH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HUH FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STM3117 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 ~~Salmonella enterica subsp. enterica serovar Typhimurium~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STM3117 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 "Bacillus typhimurium" Loeffler 1892])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3huh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3huh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3huh RCSB], [http://www.ebi.ac.uk/pdbsum/3huh PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3huh TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3huh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3huh OCA], [http://pdbe.org/3huh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3huh RCSB], [http://www.ebi.ac.uk/pdbsum/3huh PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3huh TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3huh ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	== References ==		== References ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Salmonella enterica subsp. enterica serovar~~ typhimurium]]	+	[[Category: Bacillus typhimurium loeffler 1892]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]

OCA at 01:24, 25 December 2014

2014-12-25T01:24:43Z

←Older revision		Revision as of 01:24, 25 December 2014
Line 6:		Line 6:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3huh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3huh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3huh RCSB], [http://www.ebi.ac.uk/pdbsum/3huh PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3huh TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3huh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3huh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3huh RCSB], [http://www.ebi.ac.uk/pdbsum/3huh PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3huh TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/VIR17_SALTY VIR17_SALTY]] Is critically involved in promoting the replication of S.typhimurium cells inside host macrophages, suggesting a role in the establishment of bacterial colonization within macrophages. May be involved in the biosynthesis and modification of the peptidoglycan layer of the cell wall.<ref>PMID:16893888</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 16:		Line 18:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 13:41, 6 November 2014

2014-11-06T13:41:00Z

←Older revision		Revision as of 13:41, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3huh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HUH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HUH FirstGlance]. <br>		<table><tr><td colspan='2'>[[3huh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HUH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HUH FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STM3117 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STM3117 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3huh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3huh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3huh RCSB], [http://www.ebi.ac.uk/pdbsum/3huh PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3huh TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3huh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3huh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3huh RCSB], [http://www.ebi.ac.uk/pdbsum/3huh PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3huh TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 19:
	</StructureSection>		</StructureSection>
	[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]		[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Fedorov, A A.]]	+	[[Category: Fedorov, A A]]
-	[[Category: Fedorov, E V.]]	+	[[Category: Fedorov, E V]]
-	[[Category: ~~NYSGXRC, New York SGX Research Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Sauder, J M.]]	+	[[Category: Sauder, J M]]
-	[[Category: Toro, R.]]	+	[[Category: Toro, R]]
	[[Category: Dioxygenase]]		[[Category: Dioxygenase]]
-	[[Category: New york sgx research center for structural genomic]]
	[[Category: Nysgrc]]		[[Category: Nysgrc]]
-	[[Category: ~~Nysgxrc~~]]	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Target 13955a1bct15p1]]		[[Category: Target 13955a1bct15p1]]
	[[Category: Viral protein]]		[[Category: Viral protein]]
	[[Category: Virulence]]		[[Category: Virulence]]

OCA at 13:19, 29 September 2014

2014-09-29T13:19:06Z

←Older revision		Revision as of 13:19, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:3huh.png\|left\|200px]]~~	+	==The structure of biphenyl-2,3-diol 1,2-dioxygenase iii-related protein from salmonella typhimurium==
-		+	<StructureSection load='3huh' size='340' side='right' caption='[[3huh]], [[Resolution\|resolution]] 1.50Å' scene=''>
-	~~{{STRUCTURE_3huh\| PDB=3huh \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3huh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HUH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HUH FirstGlance]. <br>
-	===The structure of biphenyl-2,3-diol 1,2-dioxygenase iii-related protein from salmonella typhimurium===	+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STM3117 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3huh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3huh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3huh RCSB], [http://www.ebi.ac.uk/pdbsum/3huh PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3huh TOPSAN]</span></td></tr>
-		+	<table>
-	==~~About this Structure~~==	+	== Evolutionary Conservation ==
-	[[3huh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HUH OCA].	+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hu/3huh_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]		[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]

OCA: Protected "3huh" [edit=sysop:move=sysop]

2012-10-24T06:31:43Z

Protected "3huh" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:31, 24 October 2012

OCA at 06:31, 24 October 2012

2012-10-24T06:31:41Z

←Older revision		Revision as of 06:31, 24 October 2012
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3huh.png\|left\|200px]]
-	[[Image:3huh.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3huh", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3huh\| PDB=3huh \| SCENE= }}		{{STRUCTURE_3huh\| PDB=3huh \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3HUH~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HUH OCA].	+	[[3huh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HUH OCA].
	[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]		[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]
Line 21:		Line 14:
	[[Category: Fedorov, E V.]]		[[Category: Fedorov, E V.]]
	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]		[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
-	[[Category: Sauder, M J.]]	+	[[Category: Sauder, J M.]]
	[[Category: Toro, R.]]		[[Category: Toro, R.]]
	[[Category: Dioxygenase]]		[[Category: Dioxygenase]]
Line 33:		Line 26:
	[[Category: Viral protein]]		[[Category: Viral protein]]
	[[Category: Virulence]]		[[Category: Virulence]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 25 11:28:54 2009''

OCA: New page: {{Seed}} 200px