3iem - Revision history

OCA at 15:57, 1 November 2023

2023-11-01T15:57:36Z

←Older revision		Revision as of 15:57, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='3iem' size='340' side='right'caption='[[3iem]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3iem' size='340' side='right'caption='[[3iem]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3iem]] is a 14 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Thet8 Thet8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IEM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3iem]] is a 14 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IEM FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>~~, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~SSU~~:~~URIDINE-5-PHOSPHOROTHIOATE~~'>~~SSU~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=SSU:URIDINE-5-PHOSPHOROTHIOATE'>SSU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b~~></td><~~td class~~=~~"sblockDat"><div style~~=~~'overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[2dkf\|2dkf]], [[3a4y\|3a4y]], [[3idz\|3idz]], [[3ie0\|3ie0]], [[3ie1\|3ie1]], [[3ie2\|3ie2]], [[3iek\|3iek]], [[3iel\|3iel]]~~</~~div~~><~~/td></tr>~~	+
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">TTHA0252 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iem OCA], [https://pdbe.org/3iem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iem RCSB], [https://www.ebi.ac.uk/pdbsum/3iem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iem ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iem OCA], [https://pdbe.org/3iem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iem RCSB], [https://www.ebi.ac.uk/pdbsum/3iem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iem ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/RNSE_THET8 RNSE_THET8]] Has endoribonuclease activity towards 23S and 16S rRNA (in vitro).	+	[https://www.uniprot.org/uniprot/RNSE_THET8 RNSE_THET8] Has endoribonuclease activity towards 23S and 16S rRNA (in vitro).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 28:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Thet8~~]]	+	[[Category: Thermus thermophilus HB8]]
-	[[Category: Ishikawa, H]]	+	[[Category: Ishikawa H]]
-	[[Category: Kuramitus, S]]	+	[[Category: Kuramitus S]]
-	[[Category: Masui, R]]	+	[[Category: Masui R]]
-	[[Category: Nakagawa, N]]	+	[[Category: Nakagawa N]]
-	[[Category: Yokoyama, S]]	+	[[Category: Yokoyama S]]
-	~~[[Category: Endonuclease]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Hydrolase-rna complex]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Metallo beta lactamase fold]]~~	+
-	~~[[Category: Nuclease]]~~	+
-	~~[[Category: Rna-binding]]~~	+
-	~~[[Category: Rrna processing~~]]	+

OCA at 03:30, 21 April 2022

2022-04-21T03:30:40Z

←Older revision		Revision as of 03:30, 21 April 2022
Line 1:		Line 1:

	==Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog==		==Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog==
-	<StructureSection load='3iem' size='340' side='right' caption='[[3iem]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='3iem' size='340' side='right'caption='[[3iem]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3iem]] is a 14 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IEM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3IEM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3iem]] is a 14 chain structure with sequence from [https://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IEM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SSU:URIDINE-5-PHOSPHOROTHIOATE'>SSU</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SSU:URIDINE-5-PHOSPHOROTHIOATE'>SSU</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dkf\|2dkf]], [[3a4y\|3a4y]], [[3idz\|3idz]], [[3ie0\|3ie0]], [[3ie1\|3ie1]], [[3ie2\|3ie2]], [[3iek\|3iek]], [[3iel\|3iel]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2dkf\|2dkf]], [[3a4y\|3a4y]], [[3idz\|3idz]], [[3ie0\|3ie0]], [[3ie1\|3ie1]], [[3ie2\|3ie2]], [[3iek\|3iek]], [[3iel\|3iel]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0252 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0252 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3iem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iem OCA], [~~http~~://pdbe.org/3iem PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3iem RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3iem PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3iem ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iem OCA], [https://pdbe.org/3iem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iem RCSB], [https://www.ebi.ac.uk/pdbsum/3iem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iem ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/RNSE_THET8 RNSE_THET8]] Has endoribonuclease activity towards 23S and 16S rRNA (in vitro).	+	[[https://www.uniprot.org/uniprot/RNSE_THET8 RNSE_THET8]] Has endoribonuclease activity towards 23S and 16S rRNA (in vitro).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 24:

	==See Also==		==See Also==
-	*[[Ribonuclease\|Ribonuclease]]	+	*[[Ribonuclease 3D structures\|Ribonuclease 3D structures]]
-	*[[Temp\|Temp]]	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Thet8]]		[[Category: Thet8]]
	[[Category: Ishikawa, H]]		[[Category: Ishikawa, H]]

OCA at 09:21, 19 December 2018

2018-12-19T09:21:53Z

←Older revision		Revision as of 09:21, 19 December 2018
Line 16:		Line 16:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ie/3iem_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ie/3iem_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 18:20, 5 August 2016

2016-08-05T18:20:21Z

←Older revision		Revision as of 18:20, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog==		==Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog==
	<StructureSection load='3iem' size='340' side='right' caption='[[3iem]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3iem' size='340' side='right' caption='[[3iem]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3iem]] is a 14 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus Thermus thermophilus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IEM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IEM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3iem]] is a 14 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IEM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IEM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SSU:URIDINE-5-PHOSPHOROTHIOATE'>SSU</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SSU:URIDINE-5-PHOSPHOROTHIOATE'>SSU</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dkf\|2dkf]], [[3a4y\|3a4y]], [[3idz\|3idz]], [[3ie0\|3ie0]], [[3ie1\|3ie1]], [[3ie2\|3ie2]], [[3iek\|3iek]], [[3iel\|3iel]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dkf\|2dkf]], [[3a4y\|3a4y]], [[3idz\|3idz]], [[3ie0\|3ie0]], [[3ie1\|3ie1]], [[3ie2\|3ie2]], [[3iek\|3iek]], [[3iel\|3iel]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0252 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~274 Thermus thermophilus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0252 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3iem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iem OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3iem RCSB], [http://www.ebi.ac.uk/pdbsum/3iem PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3iem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iem OCA], [http://pdbe.org/3iem PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3iem RCSB], [http://www.ebi.ac.uk/pdbsum/3iem PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3iem ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 20:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3iem ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 25:		Line 26:
	*[[Ribonuclease\|Ribonuclease]]		*[[Ribonuclease\|Ribonuclease]]
	*[[Temp\|Temp]]		*[[Temp\|Temp]]
-	*[[User:Jaime.Prilusky/Test/tree\|User:Jaime.Prilusky/Test/tree]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Thermus thermophilus~~]]	+	[[Category: Thet8]]
	[[Category: Ishikawa, H]]		[[Category: Ishikawa, H]]
	[[Category: Kuramitus, S]]		[[Category: Kuramitus, S]]

OCA at 20:55, 25 December 2014

2014-12-25T20:55:36Z

←Older revision		Revision as of 20:55, 25 December 2014
Line 9:		Line 9:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3iem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iem OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3iem RCSB], [http://www.ebi.ac.uk/pdbsum/3iem PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3iem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iem OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3iem RCSB], [http://www.ebi.ac.uk/pdbsum/3iem PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RNSE_THET8 RNSE_THET8]] Has endoribonuclease activity towards 23S and 16S rRNA (in vitro).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 24:
	==See Also==		==See Also==
	*[[Ribonuclease\|Ribonuclease]]		*[[Ribonuclease\|Ribonuclease]]
		+	*[[Temp\|Temp]]
		+	*[[User:Jaime.Prilusky/Test/tree\|User:Jaime.Prilusky/Test/tree]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 08:47, 8 December 2014

2014-12-08T08:47:49Z

←Older revision		Revision as of 08:47, 8 December 2014
Line 1:		Line 1:
-	~~[[Image:3iem.png\|left\|200px]]~~	+	==Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog==
-		+	<StructureSection load='3iem' size='340' side='right' caption='[[3iem]], [[Resolution\|resolution]] 2.50Å' scene=''>
-	~~{{STRUCTURE_3iem\| PDB=3iem \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3iem]] is a 14 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IEM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IEM FirstGlance]. <br>
-	===Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SSU:URIDINE-5-PHOSPHOROTHIOATE'>SSU</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dkf\|2dkf]], [[3a4y\|3a4y]], [[3idz\|3idz]], [[3ie0\|3ie0]], [[3ie1\|3ie1]], [[3ie2\|3ie2]], [[3iek\|3iek]], [[3iel\|3iel]]</td></tr>
-	==~~About this Structure~~==	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0252 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])</td></tr>
-	[[3iem]] is a 14 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IEM OCA].	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3iem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iem OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3iem RCSB], [http://www.ebi.ac.uk/pdbsum/3iem PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ie/3iem_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Ribonuclease\|Ribonuclease]]		*[[Ribonuclease\|Ribonuclease]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
-	[[Category: Ishikawa, H.]]	+	[[Category: Ishikawa, H]]
-	[[Category: Kuramitus, S.]]	+	[[Category: Kuramitus, S]]
-	[[Category: Masui, R.]]	+	[[Category: Masui, R]]
-	[[Category: Nakagawa, N.]]	+	[[Category: Nakagawa, N]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
	[[Category: Endonuclease]]		[[Category: Endonuclease]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 21:31, 20 October 2012

2012-10-20T21:31:37Z

←Older revision		Revision as of 21:31, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[3iem]] is a 14 chain structure ~~of [[Ribonuclease]]~~ with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IEM OCA].	+	[[3iem]] is a 14 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IEM OCA].

	==See Also==		==See Also==

OCA: Protected "3iem" [edit=sysop:move=sysop]

2012-07-27T13:31:36Z

Protected "3iem" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:31, 27 July 2012

OCA at 13:31, 27 July 2012

2012-07-27T13:31:34Z

←Older revision		Revision as of 13:31, 27 July 2012
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3iem.png\|left\|200px]]
-	[[Image:3iem.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3iem", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3iem\| PDB=3iem \| SCENE= }}		{{STRUCTURE_3iem\| PDB=3iem \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3IEM~~ is a 14 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IEM OCA].	+	[[3iem]] is a 14 chain structure of [[Ribonuclease]] with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IEM OCA].
		+
		+	==See Also==
		+	*[[Ribonuclease\|Ribonuclease]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Ishikawa, H.]]		[[Category: Ishikawa, H.]]
Line 29:		Line 25:
	[[Category: Rna-binding]]		[[Category: Rna-binding]]
	[[Category: Rrna processing]]		[[Category: Rrna processing]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 28 12:36:03 2010''

OCA at 08:29, 28 July 2010

2010-07-28T08:29:21Z

←Older revision		Revision as of 08:29, 28 July 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3iem.jpg\|left\|200px]]

-	The ~~entry 3iem~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3iem", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3iem\| PDB=3iem \| SCENE= }}

-	~~Authors: Ishikawa, H., Nakagawa, N., Kuramitus, S., Yokoyama, S., Masui, R.~~	+	===Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog===

-	Description: Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Aug 12~~ 12:25:~~17 2009~~''	+	==About this Structure==
		+	3IEM is a 14 chains structure with sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IEM OCA].
		+	[[Category: Thermus thermophilus]]
		+	[[Category: Ishikawa, H.]]
		+	[[Category: Kuramitus, S.]]
		+	[[Category: Masui, R.]]
		+	[[Category: Nakagawa, N.]]
		+	[[Category: Yokoyama, S.]]
		+	[[Category: Endonuclease]]
		+	[[Category: Hydrolase]]
		+	[[Category: Hydrolase-rna complex]]
		+	[[Category: Metal-binding]]
		+	[[Category: Metallo beta lactamase fold]]
		+	[[Category: Nuclease]]
		+	[[Category: Rna-binding]]
		+	[[Category: Rrna processing]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 28 12:36:03 2010''