3j1a - Revision history

OCA at 10:09, 21 February 2024

2024-02-21T10:09:16Z

←Older revision		Revision as of 10:09, 21 February 2024
Line 9:		Line 9:
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/CAPSD_BPHK7 CAPSD_BPHK7] Assembles to form an icosahedral capsid of 66 nm, with a T=7 laevo symmetry (PubMed:11000116, PubMed:21276801). Responsible for its self-assembly into a procapsid. The phage does not need to encode a separate scaffolfing protein because its capsid protein contains the delta domain that carries that function.<ref>PMID:11000116</ref> <ref>PMID:21276801</ref> <ref>PMID:7669350</ref> <ref>PMID:7723020</ref>		[https://www.uniprot.org/uniprot/CAPSD_BPHK7 CAPSD_BPHK7] Assembles to form an icosahedral capsid of 66 nm, with a T=7 laevo symmetry (PubMed:11000116, PubMed:21276801). Responsible for its self-assembly into a procapsid. The phage does not need to encode a separate scaffolfing protein because its capsid protein contains the delta domain that carries that function.<ref>PMID:11000116</ref> <ref>PMID:21276801</ref> <ref>PMID:7669350</ref> <ref>PMID:7723020</ref>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Halophage CW02 infects a Salinivibrio costicola-like bacterium, SA50, isolated from the Great Salt Lake. Following isolation, cultivation, and purification, CW02 was characterized by DNA sequencing, mass spectrometry, and electron microscopy. A conserved module of structural genes places CW02 in the T7 supergroup, members of which are found in diverse aquatic environments, including marine and freshwater ecosystems. CW02 has morphological similarities to viruses of the Podoviridae family. The structure of CW02, solved by cryogenic electron microscopy (cryo-EM) and three-dimensional reconstruction, enabled fitting of a portion of the bacteriophage HK97 capsid protein into CW02 capsid density, thereby providing additional evidence that capsid proteins of dsDNA tailed phages have a conserved fold. The CW02 capsid consists of bacteriophage lambda gpD-like densities that likely contribute to particle stability. Turret-like densities were found on icosahedral vertices and may represent a unique adaptation similar to what has been seen in other extremophilic viruses that infect archaea, such as Sulfolobus turreted icosahedral virus and halophage SH1.
-
-	Sequence and Structural Characterization of Great Salt Lake Bacteriophage CW02, a Member of the T7-like Supergroup.,Shen PS, Domek MJ, Sanz-Garcia E, Makaju A, Taylor RM, Hoggan R, Culumber M, Oberg C, Breakwell DP, Prince JT, Belnap DM J Virol. 2012 May 16. PMID:22593163<ref>PMID:22593163</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 3j1a" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 14:13, 24 January 2024

2024-01-24T14:13:04Z

←Older revision		Revision as of 14:13, 24 January 2024
Line 3:		Line 3:
	<SX load='3j1a' size='340' side='right' viewer='molstar' caption='[[3j1a]], [[Resolution\|resolution]] 16.00Å' scene=''>		<SX load='3j1a' size='340' side='right' viewer='molstar' caption='[[3j1a]], [[Resolution\|resolution]] 16.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3j1a]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Miscellaneous_nucleic_acid Miscellaneous nucleic acid~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3J1A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3j1a]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Unidentified Unidentified]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3J1A FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3j1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j1a OCA], [https://pdbe.org/3j1a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3j1a RCSB], [https://www.ebi.ac.uk/pdbsum/3j1a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3j1a ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 16Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3j1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j1a OCA], [https://pdbe.org/3j1a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3j1a RCSB], [https://www.ebi.ac.uk/pdbsum/3j1a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3j1a ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/CAPSD_BPHK7 CAPSD_BPHK7] Assembles to form an icosahedral capsid of 66 nm, with a T=7 laevo symmetry (PubMed:11000116, PubMed:21276801). Responsible for its self-assembly into a procapsid. The phage does not need to encode a separate scaffolfing protein because its capsid protein contains the delta domain that carries that function.<ref>PMID:11000116</ref> <ref>PMID:21276801</ref> <ref>PMID:7669350</ref> <ref>PMID:7723020</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 23:
	</SX>		</SX>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Miscellaneous nucleic acid~~]]	+	[[Category: Unidentified]]
-	[[Category: Belnap~~, D M~~]]	+	[[Category: Belnap DM]]
-	[[Category: Breakwell~~, D P~~]]	+	[[Category: Breakwell DP]]
-	[[Category: Culumber, M]]	+	[[Category: Culumber M]]
-	[[Category: Domek~~, M J~~]]	+	[[Category: Domek MJ]]
-	[[Category: Makaju, A]]	+	[[Category: Makaju A]]
-	[[Category: Prince~~, J T~~]]	+	[[Category: Prince JT]]
-	[[Category: Sanz-Garcia, E]]	+	[[Category: Sanz-Garcia E]]
-	[[Category: Shen~~, P S~~]]	+	[[Category: Shen PS]]
-	[[Category: Taylor, R]]	+	[[Category: Taylor R]]
-	~~[[Category: Bacteriophage hk97]]~~	+
-	~~[[Category: Bacteriophage t7]]~~	+
-	~~[[Category: Extremophile]]~~	+
-	~~[[Category: Great salt lake]]~~	+
-	~~[[Category: Halophage]]~~	+
-	~~[[Category: T7-like phage]]~~	+
-	~~[[Category: Turret]]~~	+
-	~~[[Category: Virus~~]]	+

OCA at 03:47, 21 April 2022

2022-04-21T03:47:36Z

←Older revision		Revision as of 03:47, 21 April 2022
Line 3:		Line 3:
	<SX load='3j1a' size='340' side='right' viewer='molstar' caption='[[3j1a]], [[Resolution\|resolution]] 16.00Å' scene=''>		<SX load='3j1a' size='340' side='right' viewer='molstar' caption='[[3j1a]], [[Resolution\|resolution]] 16.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3j1a]] is a 7 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Miscellaneous_nucleic_acid Miscellaneous nucleic acid]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3J1A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3j1a]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Miscellaneous_nucleic_acid Miscellaneous nucleic acid]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3J1A FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3j1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j1a OCA], [~~http~~://pdbe.org/3j1a PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3j1a RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3j1a PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3j1a ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3j1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j1a OCA], [https://pdbe.org/3j1a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3j1a RCSB], [https://www.ebi.ac.uk/pdbsum/3j1a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3j1a ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 17:41, 10 April 2020

2020-04-10T17:41:20Z

←Older revision		Revision as of 17:41, 10 April 2020
Line 3:		Line 3:
	<SX load='3j1a' size='340' side='right' viewer='molstar' caption='[[3j1a]], [[Resolution\|resolution]] 16.00Å' scene=''>		<SX load='3j1a' size='340' side='right' viewer='molstar' caption='[[3j1a]], [[Resolution\|resolution]] 16.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3j1a]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Miscellaneous_nucleic_acid Miscellaneous nucleic acid]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3J1A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3j1a]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Miscellaneous_nucleic_acid Miscellaneous nucleic acid]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3J1A FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3j1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j1a OCA], [http://pdbe.org/3j1a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3j1a RCSB], [http://www.ebi.ac.uk/pdbsum/3j1a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3j1a ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3j1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j1a OCA], [http://pdbe.org/3j1a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3j1a RCSB], [http://www.ebi.ac.uk/pdbsum/3j1a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3j1a ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 17:16, 6 March 2020

2020-03-06T17:16:36Z

←Older revision		Revision as of 17:16, 6 March 2020
Line 1:		Line 1:

	==HK97-like fold fitted into 3D reconstruction of bacteriophage CW02==		==HK97-like fold fitted into 3D reconstruction of bacteriophage CW02==
-	<~~StructureSection~~ load='3j1a' size='340' side='right' caption='[[3j1a]], [[Resolution\|resolution]] 16.00Å' scene=''>	+	<SX load='3j1a' size='340' side='right' viewer='molstar' caption='[[3j1a]], [[Resolution\|resolution]] 16.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3j1a]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Miscellaneous_nucleic_acid Miscellaneous nucleic acid]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3J1A FirstGlance]. <br>		<table><tr><td colspan='2'>[[3j1a]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Miscellaneous_nucleic_acid Miscellaneous nucleic acid]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3J1A FirstGlance]. <br>
Line 18:		Line 18:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
		+	[[Category: Large Structures]]
	[[Category: Miscellaneous nucleic acid]]		[[Category: Miscellaneous nucleic acid]]
	[[Category: Belnap, D M]]		[[Category: Belnap, D M]]

OCA at 19:12, 5 August 2016

2016-08-05T19:12:43Z

←Older revision		Revision as of 19:12, 5 August 2016
Line 1:		Line 1:
		+
	==HK97-like fold fitted into 3D reconstruction of bacteriophage CW02==		==HK97-like fold fitted into 3D reconstruction of bacteriophage CW02==
	<StructureSection load='3j1a' size='340' side='right' caption='[[3j1a]], [[Resolution\|resolution]] 16.00Å' scene=''>		<StructureSection load='3j1a' size='340' side='right' caption='[[3j1a]], [[Resolution\|resolution]] 16.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3j1a]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Miscellaneous_nucleic_acid Miscellaneous nucleic acid]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3J1A FirstGlance]. <br>		<table><tr><td colspan='2'>[[3j1a]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Miscellaneous_nucleic_acid Miscellaneous nucleic acid]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3J1A FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3j1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j1a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3j1a RCSB], [http://www.ebi.ac.uk/pdbsum/3j1a PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3j1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j1a OCA], [http://pdbe.org/3j1a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3j1a RCSB], [http://www.ebi.ac.uk/pdbsum/3j1a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3j1a ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 13:		Line 14:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3j1a" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 22:01, 3 January 2015

2015-01-03T22:01:33Z

←Older revision		Revision as of 22:01, 3 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3j1a]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Miscellaneous_nucleic_acid Miscellaneous nucleic acid]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3J1A FirstGlance]. <br>		<table><tr><td colspan='2'>[[3j1a]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Miscellaneous_nucleic_acid Miscellaneous nucleic acid]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3J1A FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3j1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j1a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3j1a RCSB], [http://www.ebi.ac.uk/pdbsum/3j1a PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3j1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j1a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3j1a RCSB], [http://www.ebi.ac.uk/pdbsum/3j1a PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 11:		Line 11:
	Sequence and Structural Characterization of Great Salt Lake Bacteriophage CW02, a Member of the T7-like Supergroup.,Shen PS, Domek MJ, Sanz-Garcia E, Makaju A, Taylor RM, Hoggan R, Culumber M, Oberg C, Breakwell DP, Prince JT, Belnap DM J Virol. 2012 May 16. PMID:22593163<ref>PMID:22593163</ref>		Sequence and Structural Characterization of Great Salt Lake Bacteriophage CW02, a Member of the T7-like Supergroup.,Shen PS, Domek MJ, Sanz-Garcia E, Makaju A, Taylor RM, Hoggan R, Culumber M, Oberg C, Breakwell DP, Prince JT, Belnap DM J Virol. 2012 May 16. PMID:22593163<ref>PMID:22593163</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 18:		Line 18:
	</StructureSection>		</StructureSection>
	[[Category: Miscellaneous nucleic acid]]		[[Category: Miscellaneous nucleic acid]]
-	[[Category: Belnap, D M.]]	+	[[Category: Belnap, D M]]
-	[[Category: Breakwell, D P.]]	+	[[Category: Breakwell, D P]]
-	[[Category: Culumber, M.]]	+	[[Category: Culumber, M]]
-	[[Category: Domek, M J.]]	+	[[Category: Domek, M J]]
-	[[Category: Makaju, A.]]	+	[[Category: Makaju, A]]
-	[[Category: Prince, J T.]]	+	[[Category: Prince, J T]]
-	[[Category: Sanz-Garcia, E.]]	+	[[Category: Sanz-Garcia, E]]
-	[[Category: Shen, P S.]]	+	[[Category: Shen, P S]]
-	[[Category: Taylor, R.]]	+	[[Category: Taylor, R]]
	[[Category: Bacteriophage hk97]]		[[Category: Bacteriophage hk97]]
	[[Category: Bacteriophage t7]]		[[Category: Bacteriophage t7]]

OCA at 10:34, 28 May 2014

2014-05-28T10:34:49Z

←Older revision		Revision as of 10:34, 28 May 2014
Line 1:		Line 1:
-	[[~~Image~~:3j1a.~~png\|left\|200px~~]]	+	==HK97-like fold fitted into 3D reconstruction of bacteriophage CW02==
		+	<StructureSection load='3j1a' size='340' side='right' caption='[[3j1a]], [[Resolution\|resolution]] 16.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3j1a]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Miscellaneous_nucleic_acid Miscellaneous nucleic acid]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3J1A FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3j1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j1a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3j1a RCSB], [http://www.ebi.ac.uk/pdbsum/3j1a PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Halophage CW02 infects a Salinivibrio costicola-like bacterium, SA50, isolated from the Great Salt Lake. Following isolation, cultivation, and purification, CW02 was characterized by DNA sequencing, mass spectrometry, and electron microscopy. A conserved module of structural genes places CW02 in the T7 supergroup, members of which are found in diverse aquatic environments, including marine and freshwater ecosystems. CW02 has morphological similarities to viruses of the Podoviridae family. The structure of CW02, solved by cryogenic electron microscopy (cryo-EM) and three-dimensional reconstruction, enabled fitting of a portion of the bacteriophage HK97 capsid protein into CW02 capsid density, thereby providing additional evidence that capsid proteins of dsDNA tailed phages have a conserved fold. The CW02 capsid consists of bacteriophage lambda gpD-like densities that likely contribute to particle stability. Turret-like densities were found on icosahedral vertices and may represent a unique adaptation similar to what has been seen in other extremophilic viruses that infect archaea, such as Sulfolobus turreted icosahedral virus and halophage SH1.

-	~~{{STRUCTURE_3j1a\| PDB=3j1a \| SCENE= }}~~	+	Sequence and Structural Characterization of Great Salt Lake Bacteriophage CW02, a Member of the T7-like Supergroup.,Shen PS, Domek MJ, Sanz-Garcia E, Makaju A, Taylor RM, Hoggan R, Culumber M, Oberg C, Breakwell DP, Prince JT, Belnap DM J Virol. 2012 May 16. PMID:22593163<ref>PMID:22593163</ref>

-	~~===HK97-like fold fitted into 3D reconstruction~~ of ~~bacteriophage CW02===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_22593163}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[3j1a]] is a 7 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Great_salt_lake_bacteriophage_cw02 Great salt lake bacteriophage cw02]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA].~~	+	</StructureSection>
-		+	[[Category: Miscellaneous nucleic acid]]
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:022593163<~~/~~ref~~><~~references group="xtra"~~/>	+
-	[[Category: ~~Great salt lake bacteriophage cw02~~]]	+
	[[Category: Belnap, D M.]]		[[Category: Belnap, D M.]]
	[[Category: Breakwell, D P.]]		[[Category: Breakwell, D P.]]

OCA at 06:17, 25 July 2012

2012-07-25T06:17:43Z

←Older revision		Revision as of 06:17, 25 July 2012
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-	[[Image:3j1a.~~jpg~~\|left\|200px]]	+	[[Image:3j1a.png\|left\|200px]]

-	<!--
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-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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-	-->
	{{STRUCTURE_3j1a\| PDB=3j1a \| SCENE= }}		{{STRUCTURE_3j1a\| PDB=3j1a \| SCENE= }}

	===HK97-like fold fitted into 3D reconstruction of bacteriophage CW02===		===HK97-like fold fitted into 3D reconstruction of bacteriophage CW02===

-
-	<!--
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	{{ABSTRACT_PUBMED_22593163}}		{{ABSTRACT_PUBMED_22593163}}

OCA at 05:49, 30 May 2012

2012-05-30T05:49:42Z

←Older revision		Revision as of 05:49, 30 May 2012
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-	~~'''Unreleased structure'''~~	+	[[Image:3j1a.jpg\|left\|200px]]

-	The ~~entry 3j1a~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3j1a", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3j1a\| PDB=3j1a \| SCENE= }}

-	~~Authors: Shen, P.S., Domek, M.J., Sanz~~-~~Garcia, E., Makaju, A., Taylor, R., Culumber, M., Breakwell, D.P., Prince, J.T., Belnap, D.M.~~	+	===HK97-like fold fitted into 3D reconstruction of bacteriophage CW02===

-	~~Description~~: ~~HK97~~-~~like fold fitted into 3D reconstruction of~~ bacteriophage ~~CW02~~	+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_22593163}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 22593163 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_22593163}}
		+
		+	==About this Structure==
		+	[[3j1a]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Great_salt_lake_bacteriophage_cw02 Great salt lake bacteriophage cw02]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J1A OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:022593163</ref><references group="xtra"/>
		+	[[Category: Great salt lake bacteriophage cw02]]
		+	[[Category: Belnap, D M.]]
		+	[[Category: Breakwell, D P.]]
		+	[[Category: Culumber, M.]]
		+	[[Category: Domek, M J.]]
		+	[[Category: Makaju, A.]]
		+	[[Category: Prince, J T.]]
		+	[[Category: Sanz-Garcia, E.]]
		+	[[Category: Shen, P S.]]
		+	[[Category: Taylor, R.]]
		+	[[Category: Bacteriophage hk97]]
		+	[[Category: Bacteriophage t7]]
		+	[[Category: Extremophile]]
		+	[[Category: Great salt lake]]
		+	[[Category: Halophage]]
		+	[[Category: T7-like phage]]
		+	[[Category: Turret]]
		+	[[Category: Virus]]