3l0u - Revision history

OCA at 10:41, 16 August 2023

2023-08-16T10:41:19Z

←Older revision		Revision as of 10:41, 16 August 2023
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	<StructureSection load='3l0u' size='340' side='right'caption='[[3l0u]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='3l0u' size='340' side='right'caption='[[3l0u]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l0u]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L0U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L0U FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l0u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L0U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L0U FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l0u OCA], [https://pdbe.org/3l0u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l0u RCSB], [https://www.ebi.ac.uk/pdbsum/3l0u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l0u ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l0u OCA], [https://pdbe.org/3l0u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l0u RCSB], [https://www.ebi.ac.uk/pdbsum/3l0u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l0u ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Escherichia coli K-12]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Antson~~, A A~~]]	+	[[Category: Antson AA]]
-	[[Category: Byrne~~, R T~~]]	+	[[Category: Byrne RT]]
-	[[Category: Konevega~~, A L~~]]	+	[[Category: Konevega AL]]
-	[[Category: Rodnina~~, M V]]~~	+	[[Category: Rodnina MV]]
-	~~[[Category: Rna]]~~	+
-	~~[[Category: Transcript]]~~	+
-	~~[[Category: Transfer rna]]~~	+
-	~~[[Category: Trna]]~~	+
-	~~[[Category: Unmodified~~]]	+

OCA at 07:52, 10 November 2021

2021-11-10T07:52:24Z

←Older revision		Revision as of 07:52, 10 November 2021
Line 3:		Line 3:
	<StructureSection load='3l0u' size='340' side='right'caption='[[3l0u]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='3l0u' size='340' side='right'caption='[[3l0u]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l0u]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L0U OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3L0U FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l0u]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L0U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L0U FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3l0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l0u OCA], [~~http~~://pdbe.org/3l0u PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3l0u RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3l0u PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3l0u ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l0u OCA], [https://pdbe.org/3l0u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l0u RCSB], [https://www.ebi.ac.uk/pdbsum/3l0u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l0u ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:49, 25 December 2019

2019-12-25T09:49:50Z

←Older revision		Revision as of 09:49, 25 December 2019
Line 1:		Line 1:

	==The crystal structure of unmodified tRNAPhe from Escherichia coli==		==The crystal structure of unmodified tRNAPhe from Escherichia coli==
-	<StructureSection load='3l0u' size='340' side='right' caption='[[3l0u]], [[Resolution\|resolution]] 3.00Å' scene=''>	+	<StructureSection load='3l0u' size='340' side='right'caption='[[3l0u]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3l0u]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L0U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L0U FirstGlance]. <br>		<table><tr><td colspan='2'>[[3l0u]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L0U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L0U FirstGlance]. <br>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Antson, A A]]		[[Category: Antson, A A]]
	[[Category: Byrne, R T]]		[[Category: Byrne, R T]]

OCA at 06:05, 5 August 2016

2016-08-05T06:05:56Z

←Older revision		Revision as of 06:05, 5 August 2016
Line 1:		Line 1:
		+
	==The crystal structure of unmodified tRNAPhe from Escherichia coli==		==The crystal structure of unmodified tRNAPhe from Escherichia coli==
	<StructureSection load='3l0u' size='340' side='right' caption='[[3l0u]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='3l0u' size='340' side='right' caption='[[3l0u]], [[Resolution\|resolution]] 3.00Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[3l0u]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L0U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L0U FirstGlance]. <br>		<table><tr><td colspan='2'>[[3l0u]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L0U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L0U FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l0u OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l0u RCSB], [http://www.ebi.ac.uk/pdbsum/3l0u PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l0u OCA], [http://pdbe.org/3l0u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l0u RCSB], [http://www.ebi.ac.uk/pdbsum/3l0u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l0u ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 14:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3l0u" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 17:07, 18 December 2014

2014-12-18T17:07:44Z

←Older revision		Revision as of 17:07, 18 December 2014
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-	~~{{STRUCTURE_3l0u~~\| ~~PDB~~=3l0u \| ~~SCENE~~= }}	+	==The crystal structure of unmodified tRNAPhe from Escherichia coli==
-	===~~The~~ crystal structure of unmodified ~~tRNAPhe~~ from Escherichia coli~~===~~	+	<StructureSection load='3l0u' size='340' side='right' caption='[[3l0u]], [[Resolution\|resolution]] 3.00Å' scene=''>
-	~~{{ABSTRACT_PUBMED_20203084}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3l0u]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L0U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L0U FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l0u OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l0u RCSB], [http://www.ebi.ac.uk/pdbsum/3l0u PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Post-transcriptional nucleoside modifications fine-tune the biophysical and biochemical properties of transfer RNA (tRNA) so that it is optimized for participation in cellular processes. Here we report the crystal structure of unmodified tRNA(Phe) from Escherichia coli at a resolution of 3 A. We show that in the absence of modifications the overall fold of the tRNA is essentially the same as that of mature tRNA. However, there are a number of significant structural differences, such as rearrangements in a triplet base pair and a widened angle between the acceptor and anticodon stems. Contrary to previous observations, the anticodon adopts the same conformation as seen in mature tRNA.

-	~~==About this Structure==~~	+	The crystal structure of unmodified tRNAPhe from Escherichia coli.,Byrne RT, Konevega AL, Rodnina MV, Antson AA Nucleic Acids Res. 2010 Jul 1;38(12):4154-62. Epub 2010 Mar 4. PMID:20203084<ref>PMID:20203084</ref>
-	~~[[3l0u]] is a 1 chain~~ structure. ~~Full crystallographic information is available from [http~~:~~//oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=3L0U OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:020203084</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
-	[[Category: Antson, A A.]]	+	== References ==
-	[[Category: Byrne, R T.]]	+	<references/>
-	[[Category: Konevega, A L.]]	+	__TOC__
-	[[Category: Rodnina, M V.]]	+	</StructureSection>
		+	[[Category: Antson, A A]]
		+	[[Category: Byrne, R T]]
		+	[[Category: Konevega, A L]]
		+	[[Category: Rodnina, M V]]
	[[Category: Rna]]		[[Category: Rna]]
	[[Category: Transcript]]		[[Category: Transcript]]

OCA: Protected "3l0u" [edit=sysop:move=sysop]

2013-04-04T20:14:13Z

Protected "3l0u" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:14, 4 April 2013

OCA at 20:14, 4 April 2013

2013-04-04T20:14:10Z

←Older revision		Revision as of 20:14, 4 April 2013
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-	{{Seed}}
-	[[Image:3l0u.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3l0u", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3l0u\| PDB=3l0u \| SCENE= }}		{{STRUCTURE_3l0u\| PDB=3l0u \| SCENE= }}
-
	===The crystal structure of unmodified tRNAPhe from Escherichia coli===		===The crystal structure of unmodified tRNAPhe from Escherichia coli===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20203084}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20203084 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20203084}}		{{ABSTRACT_PUBMED_20203084}}

	==About this Structure==		==About this Structure==
-	~~3L0U~~ is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L0U OCA].	+	[[3l0u]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L0U OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20203084~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020203084</ref><references group="xtra"/><references/>
	[[Category: Antson, A A.]]		[[Category: Antson, A A.]]
	[[Category: Byrne, R T.]]		[[Category: Byrne, R T.]]
Line 33:		Line 17:
	[[Category: Trna]]		[[Category: Trna]]
	[[Category: Unmodified]]		[[Category: Unmodified]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 17 09:31:45 2010''

OCA at 07:31, 17 March 2010

2010-03-17T07:31:46Z

←Older revision		Revision as of 07:31, 17 March 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3l0u.jpg\|left\|200px]]

-	The ~~entry 3l0u~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3l0u", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3l0u\| PDB=3l0u \| SCENE= }}

-	~~Authors: Byrne, R.T., Konevega, A.L., Rodnina, M.V., Antson, A.A.~~	+	===The crystal structure of unmodified tRNAPhe from Escherichia coli===

-	Description: The crystal structure of unmodified tRNAPhe from Escherichia coli

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar ~~10 13~~:10:15 2010''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20203084}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20203084 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20203084}}
		+
		+	==About this Structure==
		+	3L0U is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L0U OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20203084</ref><references group="xtra"/>
		+	[[Category: Antson, A A.]]
		+	[[Category: Byrne, R T.]]
		+	[[Category: Konevega, A L.]]
		+	[[Category: Rodnina, M V.]]
		+	[[Category: Rna]]
		+	[[Category: Transcript]]
		+	[[Category: Transfer rna]]
		+	[[Category: Trna]]
		+	[[Category: Unmodified]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 17 09:31:45 2010''

OCA at 11:10, 10 March 2010

2010-03-10T11:10:16Z

←Older revision		Revision as of 11:10, 10 March 2010
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3l0u is ON HOLD	+	The entry 3l0u is ON HOLD until Paper Publication

	Authors: Byrne, R.T., Konevega, A.L., Rodnina, M.V., Antson, A.A.		Authors: Byrne, R.T., Konevega, A.L., Rodnina, M.V., Antson, A.A.
Line 7:		Line 7:
	Description: The crystal structure of unmodified tRNAPhe from Escherichia coli		Description: The crystal structure of unmodified tRNAPhe from Escherichia coli

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Dec 16 12~~:40:~~51 2009~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 10 13:10:15 2010''

OCA: New page: '''Unreleased structure''' The entry 3l0u is ON HOLD Authors: Byrne, R.T., Konevega, A.L., Rodnina, M.V., Antson, A.A. Description: The crystal structure of unmodified tRNAPhe from Esc...

2009-12-16T10:40:52Z

New page: '''Unreleased structure''' The entry 3l0u is ON HOLD Authors: Byrne, R.T., Konevega, A.L., Rodnina, M.V., Antson, A.A. Description: The crystal structure of unmodified tRNAPhe from Esc...

New page

'''Unreleased structure'''

The entry 3l0u is ON HOLD

Authors: Byrne, R.T., Konevega, A.L., Rodnina, M.V., Antson, A.A.

Description: The crystal structure of unmodified tRNAPhe from Escherichia coli

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 16 12:40:51 2009''