3l8l - Revision history

OCA at 08:32, 6 September 2023

2023-09-06T08:32:52Z

←Older revision		Revision as of 08:32, 6 September 2023
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	<StructureSection load='3l8l' size='340' side='right'caption='[[3l8l]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='3l8l' size='340' side='right'caption='[[3l8l]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l8l]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bacillus_brevis Bacillus~~ brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L8L FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l8l]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L8L FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>~~, ~~<scene name='pdbligand=MOH:METHANOL'>MOH</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.25Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=MOH:METHANOL'>MOH</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PRD_000152:GRAMICIDIN+D'>PRD_000152</scene></td></tr>
-	<~~tr id~~='~~related~~'><~~td class="sblockLbl"~~><~~b>[[Related_structure\|Related~~:~~]]</b~~></td><~~td class~~=~~"sblockDat"><div style~~=~~'overflow~~: ~~auto; max-height: 3em;~~'>[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1bdw\|1bdw]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</~~div~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l8l OCA], [https://pdbe.org/3l8l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l8l RCSB], [https://www.ebi.ac.uk/pdbsum/3l8l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l8l ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l8l OCA], [https://pdbe.org/3l8l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l8l RCSB], [https://www.ebi.ac.uk/pdbsum/3l8l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l8l ProSAT]</span></td></tr>
	</table>		</table>
Line 25:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ brevis]]	+	[[Category: Brevibacillus brevis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bojarska, J]]	+	[[Category: Bojarska J]]
-	[[Category: Duax~~, W L~~]]	+	[[Category: Duax WL]]
-	[[Category: Glowka~~, M L~~]]	+	[[Category: Glowka ML]]
-	[[Category: Olczak, A]]	+	[[Category: Olczak A]]
-	[[Category: Szczesio, M]]	+	[[Category: Szczesio M]]
-	[[Category: Wawrzak, Z]]	+	[[Category: Wawrzak Z]]
-	~~[[Category: Antibacterial]]~~	+
-	~~[[Category: Antibiotic]]~~	+
-	~~[[Category: Antifungal]]~~	+
-	~~[[Category: Gramicidin]]~~	+
-	~~[[Category: Gramicidin-nai complex]]~~	+
-	~~[[Category: Linear gramicidin]]~~	+
-	~~[[Category: Membrane ion channel~~]]	+

OCA at 05:41, 13 July 2022

2022-07-13T05:41:11Z

←Older revision		Revision as of 05:41, 13 July 2022
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	<StructureSection load='3l8l' size='340' side='right'caption='[[3l8l]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='3l8l' size='340' side='right'caption='[[3l8l]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l8l]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bacillus_brevis Bacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8L OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3L8L FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l8l]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_brevis Bacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L8L FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=MOH:METHANOL'>MOH</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=MOH:METHANOL'>MOH</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1bdw\|1bdw]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1bdw\|1bdw]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3l8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l8l OCA], [~~http~~://pdbe.org/3l8l PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3l8l RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3l8l PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3l8l ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l8l OCA], [https://pdbe.org/3l8l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l8l RCSB], [https://www.ebi.ac.uk/pdbsum/3l8l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l8l ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:05, 7 October 2020

2020-10-07T07:05:27Z

←Older revision		Revision as of 07:05, 7 October 2020
Line 1:		Line 1:

	==Gramicidin D complex with sodium iodide==		==Gramicidin D complex with sodium iodide==
-	<StructureSection load='3l8l' size='340' side='right' caption='[[3l8l]], [[Resolution\|resolution]] 1.25Å' scene=''>	+	<StructureSection load='3l8l' size='340' side='right'caption='[[3l8l]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l8l]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_brevis Bacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8L OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3L8L FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l8l]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_brevis Bacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8L OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3L8L FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=MOH:METHANOL'>MOH</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=MOH:METHANOL'>MOH</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1bdw\|1bdw]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1bdw\|1bdw]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3l8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l8l OCA], [http://pdbe.org/3l8l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l8l RCSB], [http://www.ebi.ac.uk/pdbsum/3l8l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l8l ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3l8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l8l OCA], [http://pdbe.org/3l8l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l8l RCSB], [http://www.ebi.ac.uk/pdbsum/3l8l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l8l ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</StructureSection>		</StructureSection>
	[[Category: Bacillus brevis]]		[[Category: Bacillus brevis]]
		+	[[Category: Large Structures]]
	[[Category: Bojarska, J]]		[[Category: Bojarska, J]]
	[[Category: Duax, W L]]		[[Category: Duax, W L]]

OCA at 06:55, 2 January 2019

2019-01-02T06:55:08Z

←Older revision		Revision as of 06:55, 2 January 2019
Line 3:		Line 3:
	<StructureSection load='3l8l' size='340' side='right' caption='[[3l8l]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='3l8l' size='340' side='right' caption='[[3l8l]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l8l]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Brevibacillus_brevis Brevibacillus~~ brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L8L FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l8l]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_brevis Bacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L8L FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=MOH:METHANOL'>MOH</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=MOH:METHANOL'>MOH</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>
Line 25:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Brevibacillus~~ brevis]]	+	[[Category: Bacillus brevis]]
	[[Category: Bojarska, J]]		[[Category: Bojarska, J]]
	[[Category: Duax, W L]]		[[Category: Duax, W L]]

OCA at 20:35, 9 December 2016

2016-12-09T20:35:47Z

←Older revision		Revision as of 20:35, 9 December 2016
Line 1:		Line 1:
		+
	==Gramicidin D complex with sodium iodide==		==Gramicidin D complex with sodium iodide==
	<StructureSection load='3l8l' size='340' side='right' caption='[[3l8l]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='3l8l' size='340' side='right' caption='[[3l8l]], [[Resolution\|resolution]] 1.25Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1bdw\|1bdw]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1bdw\|1bdw]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l8l OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l8l RCSB], [http://www.ebi.ac.uk/pdbsum/3l8l PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l8l OCA], [http://pdbe.org/3l8l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l8l RCSB], [http://www.ebi.ac.uk/pdbsum/3l8l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l8l ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3l8l" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 09:17, 9 December 2014

2014-12-09T09:17:24Z

←Older revision		Revision as of 09:17, 9 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3l8l.~~png~~\|~~left~~\|~~200px~~]]	+	==Gramicidin D complex with sodium iodide==
		+	<StructureSection load='3l8l' size='340' side='right' caption='[[3l8l]], [[Resolution\|resolution]] 1.25Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3l8l]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L8L FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=MOH:METHANOL'>MOH</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1bdw\|1bdw]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l8l OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l8l RCSB], [http://www.ebi.ac.uk/pdbsum/3l8l PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of the nonstoichiometric complex of gramicidin D with NaI has been studied using synchrotron radiation at 100 K. The limiting resolution was 1.25 A and the R factor was 16% for 19 883 observed reflections. The general architecture of the antiparallel two-stranded gramicidin dimers in the studied crystal was a right-handed antiparallel double-stranded form that closely resembles the structures of other right-handed species published to date. However, there were several surprising observations. In addition to the significantly different composition of linear gramicidins identified in the crystal structure, including the absence of the gramicidin C form, only two cationic sites were found in each of the two independent dimers (channels), which were partially occupied by sodium, compared with the seven sites found in the RbCl complex of gramicidin. The sum of the partial occupancies of Na(+) was only 1.26 per two dimers and was confirmed by the similar content of iodine ions (1.21 ions distributed over seven sites), which was easily visible from their anomalous signal. Another surprising observation was the significant asymmetry of the distributions and occupancies of cations in the gramicidin dimers, which was in contrast to those observed in the high-resolution structures of the complexes of heavier alkali metals with gramicidin D, especially that of rubidium.

-	~~{{STRUCTURE_3l8l\| PDB=3l8l \| SCENE= }}~~	+	The first crystal structure of a gramicidin complex with sodium: high-resolution study of a nonstoichiometric gramicidin D-NaI complex.,Olczak A, Glowka ML, Szczesio M, Bojarska J, Wawrzak Z, Duax WL Acta Crystallogr D Biol Crystallogr. 2010 Aug;66(Pt 8):874-80. Epub 2010, Jul 9. PMID:20693686<ref>PMID:20693686</ref>

-	~~===Gramicidin D complex with sodium iodide===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_20693686}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3l8l]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Brevibacillus_brevis Brevibacillus brevis]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3L8L OCA].~~	+

	==See Also==		==See Also==
	*[[Gramicidin\|Gramicidin]]		*[[Gramicidin\|Gramicidin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:020693686<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Brevibacillus brevis]]		[[Category: Brevibacillus brevis]]
-	[[Category: Bojarska, J.]]	+	[[Category: Bojarska, J]]
-	[[Category: Duax, W L.]]	+	[[Category: Duax, W L]]
-	[[Category: Glowka, M L.]]	+	[[Category: Glowka, M L]]
-	[[Category: Olczak, A.]]	+	[[Category: Olczak, A]]
-	[[Category: Szczesio, M.]]	+	[[Category: Szczesio, M]]
-	[[Category: Wawrzak, Z.]]	+	[[Category: Wawrzak, Z]]
	[[Category: Antibacterial]]		[[Category: Antibacterial]]
	[[Category: Antibiotic]]		[[Category: Antibiotic]]

OCA at 20:57, 20 October 2012

2012-10-20T20:57:53Z

←Older revision		Revision as of 20:57, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3l8l]] is a 4 chain structure ~~of [[Gramicidin]]~~ with sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8L OCA].	+	[[3l8l]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8L OCA].

	==See Also==		==See Also==

OCA at 12:10, 27 July 2012

2012-07-27T12:10:10Z

←Older revision		Revision as of 12:10, 27 July 2012
Line 1:		Line 1:
	[[Image:3l8l.png\|left\|200px]]		[[Image:3l8l.png\|left\|200px]]

-	<!--
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-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_3l8l\| PDB=3l8l \| SCENE= }}		{{STRUCTURE_3l8l\| PDB=3l8l \| SCENE= }}

	===Gramicidin D complex with sodium iodide===		===Gramicidin D complex with sodium iodide===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20693686}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20693686 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_20693686}}		{{ABSTRACT_PUBMED_20693686}}

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	==See Also==		==See Also==
-	*[[Gramicidin]]	+	*[[Gramicidin\|Gramicidin]]

	==Reference==		==Reference==

OCA at 07:03, 28 March 2012

2012-03-28T07:03:37Z

←Older revision		Revision as of 07:03, 28 March 2012
Line 13:		Line 13:

	<!--		<!--
-	The line below this paragraph, {{~~ABSTRACT_PUBMED_020693686~~}}, adds the Publication Abstract to the page	+	The line below this paragraph, {{ABSTRACT_PUBMED_20693686}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where ~~020693686~~ is the PubMed ID number.	+	(as it appears on PubMed at http://www.pubmed.gov), where 20693686 is the PubMed ID number.
	-->		-->
-	{{~~ABSTRACT_PUBMED_020693686~~}}	+	{{ABSTRACT_PUBMED_20693686}}

	==About this Structure==		==About this Structure==
-	[[3l8l]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8L OCA].	+	[[3l8l]] is a 4 chain structure of [[Gramicidin]] with sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8L OCA].
		+
		+	==See Also==
		+	*[[Gramicidin]]

	==Reference==		==Reference==

OCA: Protected "3l8l" [edit=sysop:move=sysop]

2011-07-27T05:25:16Z

Protected "3l8l" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:25, 27 July 2011