3o0d - Revision history

OCA at 10:02, 14 February 2024

2024-02-14T10:02:30Z

←Older revision		Revision as of 10:02, 14 February 2024
Line 3:		Line 3:
	<StructureSection load='3o0d' size='340' side='right'caption='[[3o0d]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3o0d' size='340' side='right'caption='[[3o0d]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3o0d]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_18942 Atcc 18942~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3O0D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3o0d]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Yarrowia_lipolytica Yarrowia lipolytica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3O0D FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">lip2, YALI0A20350g ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4952 ATCC 18942])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3o0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o0d OCA], [https://pdbe.org/3o0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3o0d RCSB], [https://www.ebi.ac.uk/pdbsum/3o0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3o0d ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3o0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o0d OCA], [https://pdbe.org/3o0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3o0d RCSB], [https://www.ebi.ac.uk/pdbsum/3o0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3o0d ProSAT]</span></td></tr>
	</table>		</table>
-	~~<div style~~=~~"background-color:#fffaf0;">~~	+	== Function ==
-	=~~= Publication Abstract from PubMed~~ ==	+	[https://www.uniprot.org/uniprot/Q9P8F7_YARLL Q9P8F7_YARLL]
-	We report the 1.7 A resolution crystal structure of the Lip2 lipase from Yarrowia lipolytica in its closed conformation. The Lip2 structure is highly homologous to known structures of the fungal lipase family (Thermomyces lanuginosa, Rhizopus niveus, and Rhizomucor miehei lipases). However, it also presents some unique features that are described and discussed here in detail. Structural differences, in particular in the conformation adopted by the so-called lid subdomain, suggest that the opening mechanism of Lip2 may differ from that of other fungal lipases. Because the catalytic activity of lipases is strongly dependent on structural rearrangement of this mobile subdomain, we focused on elucidating the molecular mechanism of lid motion. Using the x-ray structure of Lip2, we carried out extensive molecular-dynamics simulations in explicit solvent environments (water and water/octane interface) to characterize the major structural rearrangements that the lid undergoes under the influence of solvent or upon substrate binding. Overall, our results suggest a two-step opening mechanism that gives rise first to a semi-open conformation upon adsorption of the protein at the water/organic solvent interface, followed by a further opening of the lid upon substrate binding.	+
-		+
-	~~Exploring the conformational states and rearrangements of Yarrowia lipolytica Lipase.,Bordes F, Barbe S, Escalier P, Mourey L, Andre I, Marty A, Tranier S Biophys J. 2010 Oct 6;99(7)~~:~~2225-34. PMID:20923657<ref>PMID:20923657<~~/~~ref>~~	+
-		+
-	~~From MEDLINE®~~/~~PubMed®, a database of the U~~.S. ~~National Library of Medicine.<br>~~	+
-	</~~div>~~	+
-	~~<div class="pdbe-citations 3o0d" style="background-color:#fffaf0;"><~~/~~div>~~	+

	==See Also==		==See Also==
	*[[Lipase 3D Structures\|Lipase 3D Structures]]		*[[Lipase 3D Structures\|Lipase 3D Structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 18942]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Triacylglycerol lipase~~]]	+	[[Category: Yarrowia lipolytica]]
-	[[Category: Bordes, F]]	+	[[Category: Bordes F]]
-	[[Category: Marty, A]]	+	[[Category: Marty A]]
-	[[Category: Mourey, L]]	+	[[Category: Mourey L]]
-	[[Category: Tranier, S]]	+	[[Category: Tranier S]]
-	~~[[Category: Alpha/beta-hydrolase]]~~	+
-	~~[[Category: Extracellular]]~~	+
-	~~[[Category: Glycosylation]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Lipase]]~~	+
-	~~[[Category: Lipids binding~~]]	+

OCA at 07:12, 12 May 2022

2022-05-12T07:12:57Z

←Older revision		Revision as of 07:12, 12 May 2022
Line 1:		Line 1:

	==Crystal structure of Lip2 lipase from Yarrowia lipolytica at 1.7 A resolution==		==Crystal structure of Lip2 lipase from Yarrowia lipolytica at 1.7 A resolution==
-	<StructureSection load='3o0d' size='340' side='right' caption='[[3o0d]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='3o0d' size='340' side='right'caption='[[3o0d]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3o0d]] is a 7 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_18942 Atcc 18942]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0D OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3O0D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3o0d]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_18942 Atcc 18942]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3O0D FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">lip2, YALI0A20350g ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4952 ATCC 18942])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">lip2, YALI0A20350g ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4952 ATCC 18942])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3o0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o0d OCA], [~~http~~://pdbe.org/3o0d PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3o0d RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3o0d PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3o0d ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3o0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o0d OCA], [https://pdbe.org/3o0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3o0d RCSB], [https://www.ebi.ac.uk/pdbsum/3o0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3o0d ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 20:		Line 20:

	==See Also==		==See Also==
-	*[[Lipase\|Lipase]]	+	*[[Lipase 3D Structures\|Lipase 3D Structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 26:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 18942]]		[[Category: Atcc 18942]]
		+	[[Category: Large Structures]]
	[[Category: Triacylglycerol lipase]]		[[Category: Triacylglycerol lipase]]
	[[Category: Bordes, F]]		[[Category: Bordes, F]]

OCA at 04:09, 10 December 2016

2016-12-10T04:09:55Z

←Older revision		Revision as of 04:09, 10 December 2016
Line 1:		Line 1:
		+
	==Crystal structure of Lip2 lipase from Yarrowia lipolytica at 1.7 A resolution==		==Crystal structure of Lip2 lipase from Yarrowia lipolytica at 1.7 A resolution==
	<StructureSection load='3o0d' size='340' side='right' caption='[[3o0d]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3o0d' size='340' side='right' caption='[[3o0d]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3o0d]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Yarrowia_lipolytica Yarrowia lipolytica~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3O0D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3o0d]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18942 Atcc 18942]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3O0D FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">lip2, YALI0A20350g ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4952 ~~Yarrowia lipolytica~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">lip2, YALI0A20350g ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4952 ATCC 18942])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3o0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o0d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3o0d RCSB], [http://www.ebi.ac.uk/pdbsum/3o0d PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3o0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o0d OCA], [http://pdbe.org/3o0d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3o0d RCSB], [http://www.ebi.ac.uk/pdbsum/3o0d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3o0d ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3o0d" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 23:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 18942]]
	[[Category: Triacylglycerol lipase]]		[[Category: Triacylglycerol lipase]]
-	[[Category: Yarrowia lipolytica]]
	[[Category: Bordes, F]]		[[Category: Bordes, F]]
	[[Category: Marty, A]]		[[Category: Marty, A]]

OCA at 11:31, 9 December 2014

2014-12-09T11:31:15Z

←Older revision		Revision as of 11:31, 9 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3o0d.~~png~~\|~~left~~\|~~200px~~]]	+	==Crystal structure of Lip2 lipase from Yarrowia lipolytica at 1.7 A resolution==
		+	<StructureSection load='3o0d' size='340' side='right' caption='[[3o0d]], [[Resolution\|resolution]] 1.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3o0d]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Yarrowia_lipolytica Yarrowia lipolytica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3O0D FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">lip2, YALI0A20350g ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4952 Yarrowia lipolytica])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3o0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o0d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3o0d RCSB], [http://www.ebi.ac.uk/pdbsum/3o0d PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We report the 1.7 A resolution crystal structure of the Lip2 lipase from Yarrowia lipolytica in its closed conformation. The Lip2 structure is highly homologous to known structures of the fungal lipase family (Thermomyces lanuginosa, Rhizopus niveus, and Rhizomucor miehei lipases). However, it also presents some unique features that are described and discussed here in detail. Structural differences, in particular in the conformation adopted by the so-called lid subdomain, suggest that the opening mechanism of Lip2 may differ from that of other fungal lipases. Because the catalytic activity of lipases is strongly dependent on structural rearrangement of this mobile subdomain, we focused on elucidating the molecular mechanism of lid motion. Using the x-ray structure of Lip2, we carried out extensive molecular-dynamics simulations in explicit solvent environments (water and water/octane interface) to characterize the major structural rearrangements that the lid undergoes under the influence of solvent or upon substrate binding. Overall, our results suggest a two-step opening mechanism that gives rise first to a semi-open conformation upon adsorption of the protein at the water/organic solvent interface, followed by a further opening of the lid upon substrate binding.

-	~~{{STRUCTURE_3o0d\| PDB=3o0d \| SCENE= }}~~	+	Exploring the conformational states and rearrangements of Yarrowia lipolytica Lipase.,Bordes F, Barbe S, Escalier P, Mourey L, Andre I, Marty A, Tranier S Biophys J. 2010 Oct 6;99(7):2225-34. PMID:20923657<ref>PMID:20923657</ref>

-	~~===Crystal structure~~ of ~~Lip2 lipase from Yarrowia lipolytica at 1~~.~~7 A resolution===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_20923657}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3o0d]] is a 7 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Yarrowia_lipolytica Yarrowia lipolytica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0D OCA].~~	+

	==See Also==		==See Also==
	*[[Lipase\|Lipase]]		*[[Lipase\|Lipase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:020923657<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Triacylglycerol lipase]]		[[Category: Triacylglycerol lipase]]
	[[Category: Yarrowia lipolytica]]		[[Category: Yarrowia lipolytica]]
-	[[Category: Bordes, F.]]	+	[[Category: Bordes, F]]
-	[[Category: Marty, A.]]	+	[[Category: Marty, A]]
-	[[Category: Mourey, L.]]	+	[[Category: Mourey, L]]
-	[[Category: Tranier, S.]]	+	[[Category: Tranier, S]]
	[[Category: Alpha/beta-hydrolase]]		[[Category: Alpha/beta-hydrolase]]
	[[Category: Extracellular]]		[[Category: Extracellular]]

OCA at 08:37, 20 October 2012

2012-10-20T08:37:58Z

←Older revision		Revision as of 08:37, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3o0d]] is a 7 chain structure ~~of [[Lipase]]~~ with sequence from [http://en.wikipedia.org/wiki/Yarrowia_lipolytica Yarrowia lipolytica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0D OCA].	+	[[3o0d]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Yarrowia_lipolytica Yarrowia lipolytica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0D OCA].

	==See Also==		==See Also==

OCA at 20:14, 25 July 2012

2012-07-25T20:14:41Z

←Older revision		Revision as of 20:14, 25 July 2012
Line 1:		Line 1:
	[[Image:3o0d.png\|left\|200px]]		[[Image:3o0d.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3o0d", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3o0d\| PDB=3o0d \| SCENE= }}		{{STRUCTURE_3o0d\| PDB=3o0d \| SCENE= }}

	===Crystal structure of Lip2 lipase from Yarrowia lipolytica at 1.7 A resolution===		===Crystal structure of Lip2 lipase from Yarrowia lipolytica at 1.7 A resolution===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20923657}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20923657 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20923657}}		{{ABSTRACT_PUBMED_20923657}}

Line 22:		Line 11:

	==See Also==		==See Also==
-	*[[Lipase]]	+	*[[Lipase\|Lipase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20923657~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020923657</ref><references group="xtra"/>
	[[Category: Triacylglycerol lipase]]		[[Category: Triacylglycerol lipase]]
	[[Category: Yarrowia lipolytica]]		[[Category: Yarrowia lipolytica]]

OCA: Protected "3o0d" [edit=sysop:move=sysop]

2010-12-27T00:08:52Z

Protected "3o0d" [edit=sysop:move=sysop]

←Older revision

Revision as of 00:08, 27 December 2010

OCA at 00:08, 27 December 2010

2010-12-27T00:08:51Z

←Older revision		Revision as of 00:08, 27 December 2010
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3o0d.png\|left\|200px]]
-	[[Image:3o0d.~~jpg~~\|left\|200px]]	+

	<!--		<!--
Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	~~3O0D~~ is a 7 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Yarrowia_lipolytica Yarrowia lipolytica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0D OCA].	+	[[3o0d]] is a 7 chain structure of [[Lipase]] with sequence from [http://en.wikipedia.org/wiki/Yarrowia_lipolytica Yarrowia lipolytica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0D OCA].
		+
		+	==See Also==
		+	*[[Lipase]]

	==Reference==		==Reference==
Line 36:		Line 38:
	[[Category: Lipase]]		[[Category: Lipase]]
	[[Category: Lipids binding]]		[[Category: Lipids binding]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 24 14:18:17 2010''

OCA at 11:06, 24 November 2010

2010-11-24T11:06:47Z

←Older revision		Revision as of 11:06, 24 November 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3o0d.jpg\|left\|200px]]

-	The ~~entry 3o0d~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3o0d", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3o0d\| PDB=3o0d \| SCENE= }}

-	~~Authors: Bordes, F~~.~~, Tranier, S., Mourey, L., Marty,~~ A.	+	===Crystal structure of Lip2 lipase from Yarrowia lipolytica at 1.7 A resolution===

-	Description: Crystal structure of Lip2 lipase from Yarrowia lipolytica at 1.7 A resolution

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jul 28 12~~:27:19 2010''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20923657}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20923657 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20923657}}
		+
		+	==About this Structure==
		+	3O0D is a 7 chains structure with sequences from [http://en.wikipedia.org/wiki/Yarrowia_lipolytica Yarrowia lipolytica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0D OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20923657</ref><references group="xtra"/>
		+	[[Category: Triacylglycerol lipase]]
		+	[[Category: Yarrowia lipolytica]]
		+	[[Category: Bordes, F.]]
		+	[[Category: Marty, A.]]
		+	[[Category: Mourey, L.]]
		+	[[Category: Tranier, S.]]
		+	[[Category: Alpha/beta-hydrolase]]
		+	[[Category: Extracellular]]
		+	[[Category: Glycosylation]]
		+	[[Category: Hydrolase]]
		+	[[Category: Lipase]]
		+	[[Category: Lipids binding]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 24 14:18:17 2010''

OCA: New page: '''Unreleased structure''' The entry 3o0d is ON HOLD Authors: Bordes, F., Tranier, S., Mourey, L., Marty, A. Description: Crystal structure of Lip2 lipase from Yarrowia lipolytica at 1...

2010-07-28T08:20:36Z

New page: '''Unreleased structure''' The entry 3o0d is ON HOLD Authors: Bordes, F., Tranier, S., Mourey, L., Marty, A. Description: Crystal structure of Lip2 lipase from Yarrowia lipolytica at 1...

New page

'''Unreleased structure'''

The entry 3o0d is ON HOLD

Authors: Bordes, F., Tranier, S., Mourey, L., Marty, A.

Description: Crystal structure of Lip2 lipase from Yarrowia lipolytica at 1.7 A resolution

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 28 12:27:19 2010''