3q5c - Revision history

OCA at 17:10, 1 November 2023

2023-11-01T17:10:41Z

←Older revision		Revision as of 17:10, 1 November 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3Q5C FirstGlance]. <br>		<table><tr><td colspan='2'>[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3Q5C FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q5c OCA], [https://pdbe.org/3q5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3q5c RCSB], [https://www.ebi.ac.uk/pdbsum/3q5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3q5c ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.501Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q5c OCA], [https://pdbe.org/3q5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3q5c RCSB], [https://www.ebi.ac.uk/pdbsum/3q5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3q5c ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Gautham, N]]	+	[[Category: Gautham N]]
-	[[Category: Mandal~~, P K~~]]	+	[[Category: Mandal PK]]
-	[[Category: Venkadesh, S]]	+	[[Category: Venkadesh S]]
-	~~[[Category: Dna]]~~	+
-	~~[[Category: Sticky end~~]]	+

OCA at 05:52, 8 June 2022

2022-06-08T05:52:16Z

←Older revision		Revision as of 05:52, 8 June 2022
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	==Crystal structure of four-way junction with sticky end==		==Crystal structure of four-way junction with sticky end==
-	<StructureSection load='3q5c' size='340' side='right' caption='[[3q5c]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='3q5c' size='340' side='right'caption='[[3q5c]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3Q5C FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3Q5C FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q5c OCA], [~~http~~://pdbe.org/3q5c PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3q5c RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3q5c PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3q5c ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q5c OCA], [https://pdbe.org/3q5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3q5c RCSB], [https://www.ebi.ac.uk/pdbsum/3q5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3q5c ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Gautham, N]]		[[Category: Gautham, N]]
	[[Category: Mandal, P K]]		[[Category: Mandal, P K]]

OCA at 15:50, 5 August 2016

2016-08-05T15:50:57Z

←Older revision		Revision as of 15:50, 5 August 2016
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		+
	==Crystal structure of four-way junction with sticky end==		==Crystal structure of four-way junction with sticky end==
	<StructureSection load='3q5c' size='340' side='right' caption='[[3q5c]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3q5c' size='340' side='right' caption='[[3q5c]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3Q5C FirstGlance]. <br>		<table><tr><td colspan='2'>[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3Q5C FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q5c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3q5c RCSB], [http://www.ebi.ac.uk/pdbsum/3q5c PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q5c OCA], [http://pdbe.org/3q5c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3q5c RCSB], [http://www.ebi.ac.uk/pdbsum/3q5c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3q5c ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3q5c" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:17, 19 December 2014

2014-12-19T10:17:30Z

←Older revision		Revision as of 10:17, 19 December 2014
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-	~~{{STRUCTURE_3q5c\| PDB=3q5c \| SCENE= }}~~	+	==Crystal structure of four-way junction with sticky end==
-	===Crystal structure of four-way junction with sticky end===	+	<StructureSection load='3q5c' size='340' side='right' caption='[[3q5c]], [[Resolution\|resolution]] 2.50Å' scene=''>
-	~~{{ABSTRACT_PUBMED_21419105}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3Q5C FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q5c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3q5c RCSB], [http://www.ebi.ac.uk/pdbsum/3q5c PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We report here the crystal structure of the partially self-complementary decameric sequence d(CGGCGGCCGC), which self assembles to form a four-way junction with sticky ends. Each junction binds to four others through Watson-Crick base pairing at the sticky ends to form a rhombic structure. The rhombuses bind to each other and form two dimensional tiles. The tiles stack to form the crystal. The crystal diffracted in the space group P1 to a resolution of 2.5A. The junction has the anti-parallel stacked-X conformation like other junction structures, though the formation of the rhombic net noticeably alters the details of the junction geometry.

-	~~==About this Structure==~~	+	The sequence d(CGGCGGCCGC) self-assembles into a two dimensional rhombic DNA lattice.,Venkadesh S, Mandal PK, Gautham N Biochem Biophys Res Commun. 2011 Apr 15;407(3):548-51. Epub 2011 Mar 16. PMID:21419105<ref>PMID:21419105</ref>
-	~~[[3q5c]] is~~ a ~~4 chain structure~~. ~~Full crystallographic information is available from [http~~:~~//oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=3Q5C OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:021419105</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
-	[[Category: Gautham, N.]]	+	== References ==
-	[[Category: Mandal, P K.]]	+	<references/>
-	[[Category: Venkadesh, S.]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Gautham, N]]
		+	[[Category: Mandal, P K]]
		+	[[Category: Venkadesh, S]]
	[[Category: Dna]]		[[Category: Dna]]
	[[Category: Sticky end]]		[[Category: Sticky end]]

OCA at 08:15, 8 May 2013

2013-05-08T08:15:27Z

←Older revision		Revision as of 08:15, 8 May 2013
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-	[[Image:3q5c.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3q5c", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3q5c\| PDB=3q5c \| SCENE= }}		{{STRUCTURE_3q5c\| PDB=3q5c \| SCENE= }}
-
	===Crystal structure of four-way junction with sticky end===		===Crystal structure of four-way junction with sticky end===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_21419105}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 21419105 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_21419105}}		{{ABSTRACT_PUBMED_21419105}}

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	==Reference==		==Reference==
-	<ref group="xtra">PMID:021419105</ref><references group="xtra"/>	+	<ref group="xtra">PMID:021419105</ref><references group="xtra"/><references/>
	[[Category: Gautham, N.]]		[[Category: Gautham, N.]]
	[[Category: Mandal, P K.]]		[[Category: Mandal, P K.]]
	[[Category: Venkadesh, S.]]		[[Category: Venkadesh, S.]]
		+	[[Category: Dna]]
		+	[[Category: Sticky end]]

OCA at 05:42, 18 May 2011

2011-05-18T05:42:20Z

←Older revision		Revision as of 05:42, 18 May 2011
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-	~~'''Unreleased structure'''~~	+	[[Image:3q5c.jpg\|left\|200px]]

-	The ~~entry 3q5c~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3q5c", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3q5c\| PDB=3q5c \| SCENE= }}

-	~~Authors: Venkadesh, S., Mandal, P.K., Gautham, N.~~	+	===Crystal structure of four-way junction with sticky end===

-	~~Description~~: ~~Crystal~~ structure ~~of four~~-~~way junction with sticky end~~	+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_21419105}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 21419105 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_21419105}}
		+
		+	==About this Structure==
		+	[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:021419105</ref><references group="xtra"/>
		+	[[Category: Gautham, N.]]
		+	[[Category: Mandal, P K.]]
		+	[[Category: Venkadesh, S.]]

OCA at 06:26, 4 May 2011

2011-05-04T06:26:20Z

←Older revision		Revision as of 06:26, 4 May 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3q5c is ON HOLD	+	The entry 3q5c is ON HOLD until Paper Publication

	Authors: Venkadesh, S., Mandal, P.K., Gautham, N.		Authors: Venkadesh, S., Mandal, P.K., Gautham, N.

-	Description: Crystal structure of four-way junction with sticky end.	+	Description: Crystal structure of four-way junction with sticky end

OCA at 05:47, 9 February 2011

2011-02-09T05:47:45Z

←Older revision		Revision as of 05:47, 9 February 2011
Line 3:		Line 3:
	The entry 3q5c is ON HOLD		The entry 3q5c is ON HOLD

-	Authors: Venkadesh, S, Mandal, P. K, Gautham, N	+	Authors: Venkadesh, S., Mandal, P.K., Gautham, N.

	Description: Crystal structure of four-way junction with sticky end.		Description: Crystal structure of four-way junction with sticky end.

OCA: Protected "3q5c" [edit=sysop:move=sysop]

2011-01-05T15:56:11Z

Protected "3q5c" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:56, 5 January 2011

OCA: New page: '''Unreleased structure''' The entry 3q5c is ON HOLD Authors: Venkadesh, S, Mandal, P. K, Gautham, N Description: Crystal structure of four-way junction with sticky end.

2011-01-05T15:56:10Z

New page: '''Unreleased structure''' The entry 3q5c is ON HOLD Authors: Venkadesh, S, Mandal, P. K, Gautham, N Description: Crystal structure of four-way junction with sticky end.

New page

'''Unreleased structure'''

The entry 3q5c is ON HOLD

Authors: Venkadesh, S, Mandal, P. K, Gautham, N

Description: Crystal structure of four-way junction with sticky end.