3rwb - Revision history

OCA at 17:19, 1 November 2023

2023-11-01T17:19:22Z

←Older revision		Revision as of 17:19, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='3rwb' size='340' side='right'caption='[[3rwb]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3rwb' size='340' side='right'caption='[[3rwb]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3rwb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_700743 Atcc 700743~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RWB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RWB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3rwb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mesorhizobium_loti Mesorhizobium loti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RWB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RWB FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4PL:7-HYDROXY-6-METHYLFURO[3,4-C]PYRIDIN-1(3H)-ONE'>4PL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.699Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mlr6807, pldh-t ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=381 ATCC 700743])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4PL:7-HYDROXY-6-METHYLFURO[3,4-C]PYRIDIN-1(3H)-ONE'>4PL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Pyridoxal_4-dehydrogenase Pyridoxal 4-dehydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.107 1.1.1.107] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rwb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rwb OCA], [https://pdbe.org/3rwb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rwb RCSB], [https://www.ebi.ac.uk/pdbsum/3rwb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rwb ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rwb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rwb OCA], [https://pdbe.org/3rwb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rwb RCSB], [https://www.ebi.ac.uk/pdbsum/3rwb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rwb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PLDH_RHILO PLDH_RHILO]] Involved in the degradation of pyridoxine or pyridoxamine (free, phosphate-unbound, forms of vitamin B6). Oxidizes pyridoxal to 4-pyridoxolactone, but does not have activity toward pyridoxal 5'-phosphate, pyridoxine, pyridoxamine, pyridoxamine 5'-phosphate, 4-phthalaldehyde, 2-nitrobenzaldehyde, pyridine, formaldehyde, 2-carboxybenzaldehyde or sugars.<ref>PMID:16824480</ref>	+	[https://www.uniprot.org/uniprot/PLDH_RHILO PLDH_RHILO] Involved in the degradation of pyridoxine or pyridoxamine (free, phosphate-unbound, forms of vitamin B6). Oxidizes pyridoxal to 4-pyridoxolactone, but does not have activity toward pyridoxal 5'-phosphate, pyridoxine, pyridoxamine, pyridoxamine 5'-phosphate, 4-phthalaldehyde, 2-nitrobenzaldehyde, pyridine, formaldehyde, 2-carboxybenzaldehyde or sugars.<ref>PMID:16824480</ref>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 700743]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Pyridoxal 4-dehydrogenase~~]]	+	[[Category: Mesorhizobium loti]]
-	[[Category: Chu~~, H N]]~~	+	[[Category: Chu HN]]
-	~~[[Category: 4-pyridoxolactone]]~~	+
-	~~[[Category: Nad+]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Pyridoxal]]~~	+
-	~~[[Category: Short chain dehydrogenase/reductase~~]]	+

OCA at 10:27, 22 June 2022

2022-06-22T10:27:45Z

←Older revision		Revision as of 10:27, 22 June 2022
Line 1:		Line 1:

	==Crystal structure of complex of 4PAL (4-Pyridoxolactone) and PLDH (tetrameric pyridoxal 4-dehydrogenase) from Mesorhizobium loti==		==Crystal structure of complex of 4PAL (4-Pyridoxolactone) and PLDH (tetrameric pyridoxal 4-dehydrogenase) from Mesorhizobium loti==
-	<StructureSection load='3rwb' size='340' side='right' caption='[[3rwb]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='3rwb' size='340' side='right'caption='[[3rwb]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3rwb]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_33669~~ Atcc ~~33669~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RWB OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3RWB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3rwb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_700743 Atcc 700743]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RWB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RWB FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4PL:7-HYDROXY-6-METHYLFURO[3,4-C]PYRIDIN-1(3H)-ONE'>4PL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4PL:7-HYDROXY-6-METHYLFURO[3,4-C]PYRIDIN-1(3H)-ONE'>4PL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mlr6807, pldh-t ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=381 ATCC ~~33669~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mlr6807, pldh-t ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=381 ATCC 700743])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Pyridoxal_4-dehydrogenase Pyridoxal 4-dehydrogenase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.107 1.1.1.107] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Pyridoxal_4-dehydrogenase Pyridoxal 4-dehydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.107 1.1.1.107] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3rwb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rwb OCA], [~~http~~://pdbe.org/3rwb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3rwb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3rwb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3rwb ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rwb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rwb OCA], [https://pdbe.org/3rwb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rwb RCSB], [https://www.ebi.ac.uk/pdbsum/3rwb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rwb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PLDH_RHILO PLDH_RHILO]] Involved in the degradation of pyridoxine or pyridoxamine (free, phosphate-unbound, forms of vitamin B6). Oxidizes pyridoxal to 4-pyridoxolactone, but does not have activity toward pyridoxal 5'-phosphate, pyridoxine, pyridoxamine, pyridoxamine 5'-phosphate, 4-phthalaldehyde, 2-nitrobenzaldehyde, pyridine, formaldehyde, 2-carboxybenzaldehyde or sugars.<ref>PMID:16824480</ref>	+	[[https://www.uniprot.org/uniprot/PLDH_RHILO PLDH_RHILO]] Involved in the degradation of pyridoxine or pyridoxamine (free, phosphate-unbound, forms of vitamin B6). Oxidizes pyridoxal to 4-pyridoxolactone, but does not have activity toward pyridoxal 5'-phosphate, pyridoxine, pyridoxamine, pyridoxamine 5'-phosphate, 4-phthalaldehyde, 2-nitrobenzaldehyde, pyridine, formaldehyde, 2-carboxybenzaldehyde or sugars.<ref>PMID:16824480</ref>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc ~~33669~~]]	+	[[Category: Atcc 700743]]
		+	[[Category: Large Structures]]
	[[Category: Pyridoxal 4-dehydrogenase]]		[[Category: Pyridoxal 4-dehydrogenase]]
	[[Category: Chu, H N]]		[[Category: Chu, H N]]

OCA at 05:57, 5 August 2016

2016-08-05T05:57:20Z

←Older revision		Revision as of 05:57, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of complex of 4PAL (4-Pyridoxolactone) and PLDH (tetrameric pyridoxal 4-dehydrogenase) from Mesorhizobium loti==		==Crystal structure of complex of 4PAL (4-Pyridoxolactone) and PLDH (tetrameric pyridoxal 4-dehydrogenase) from Mesorhizobium loti==
	<StructureSection load='3rwb' size='340' side='right' caption='[[3rwb]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3rwb' size='340' side='right' caption='[[3rwb]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3rwb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Mesorhizobium_loti Mesorhizobium loti~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RWB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RWB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3rwb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_33669 Atcc 33669]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RWB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RWB FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4PL:7-HYDROXY-6-METHYLFURO[3,4-C]PYRIDIN-1(3H)-ONE'>4PL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4PL:7-HYDROXY-6-METHYLFURO[3,4-C]PYRIDIN-1(3H)-ONE'>4PL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mlr6807, pldh-t ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=381 ~~Mesorhizobium loti~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mlr6807, pldh-t ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=381 ATCC 33669])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyridoxal_4-dehydrogenase Pyridoxal 4-dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.107 1.1.1.107] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyridoxal_4-dehydrogenase Pyridoxal 4-dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.107 1.1.1.107] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rwb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rwb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rwb RCSB], [http://www.ebi.ac.uk/pdbsum/3rwb PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rwb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rwb OCA], [http://pdbe.org/3rwb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3rwb RCSB], [http://www.ebi.ac.uk/pdbsum/3rwb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3rwb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Mesorhizobium loti~~]]	+	[[Category: Atcc 33669]]
	[[Category: Pyridoxal 4-dehydrogenase]]		[[Category: Pyridoxal 4-dehydrogenase]]
	[[Category: Chu, H N]]		[[Category: Chu, H N]]

OCA at 16:19, 25 December 2014

2014-12-25T16:19:25Z

←Older revision		Revision as of 16:19, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3rwb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mesorhizobium_loti Mesorhizobium loti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RWB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RWB FirstGlance]. <br>		<table><tr><td colspan='2'>[[3rwb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mesorhizobium_loti Mesorhizobium loti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RWB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RWB FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4PL:7-HYDROXY-6-METHYLFURO[3,4-C]PYRIDIN-1(3H)-ONE'>4PL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4PL:7-HYDROXY-6-METHYLFURO[3,4-C]PYRIDIN-1(3H)-ONE'>4PL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mlr6807, pldh-t ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=381 Mesorhizobium loti])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mlr6807, pldh-t ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=381 Mesorhizobium loti])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyridoxal_4-dehydrogenase Pyridoxal 4-dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.107 1.1.1.107] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyridoxal_4-dehydrogenase Pyridoxal 4-dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.107 1.1.1.107] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rwb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rwb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rwb RCSB], [http://www.ebi.ac.uk/pdbsum/3rwb PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rwb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rwb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rwb RCSB], [http://www.ebi.ac.uk/pdbsum/3rwb PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PLDH_RHILO PLDH_RHILO]] Involved in the degradation of pyridoxine or pyridoxamine (free, phosphate-unbound, forms of vitamin B6). Oxidizes pyridoxal to 4-pyridoxolactone, but does not have activity toward pyridoxal 5'-phosphate, pyridoxine, pyridoxamine, pyridoxamine 5'-phosphate, 4-phthalaldehyde, 2-nitrobenzaldehyde, pyridine, formaldehyde, 2-carboxybenzaldehyde or sugars.<ref>PMID:16824480</ref>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Mesorhizobium loti]]		[[Category: Mesorhizobium loti]]
	[[Category: Pyridoxal 4-dehydrogenase]]		[[Category: Pyridoxal 4-dehydrogenase]]
-	[[Category: Chu, H N.]]	+	[[Category: Chu, H N]]
	[[Category: 4-pyridoxolactone]]		[[Category: 4-pyridoxolactone]]
	[[Category: Nad+]]		[[Category: Nad+]]

OCA at 04:40, 5 June 2014

2014-06-05T04:40:41Z

←Older revision		Revision as of 04:40, 5 June 2014
Line 1:		Line 1:
-	~~[[Image:3rwb.jpg\|left\|200px]]~~	+	==Crystal structure of complex of 4PAL (4-Pyridoxolactone) and PLDH (tetrameric pyridoxal 4-dehydrogenase) from Mesorhizobium loti==
-		+	<StructureSection load='3rwb' size='340' side='right' caption='[[3rwb]], [[Resolution\|resolution]] 1.70Å' scene=''>
-	~~<!--~~	+	== Structural highlights ==
-	~~The line below this paragraph, containing "STRUCTURE_3rwb", creates the "Structure Box" on the page.~~	+	<table><tr><td colspan='2'>[[3rwb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mesorhizobium_loti Mesorhizobium loti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RWB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RWB FirstGlance]. <br>
-	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4PL:7-HYDROXY-6-METHYLFURO[3,4-C]PYRIDIN-1(3H)-ONE'>4PL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene><br>
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mlr6807, pldh-t ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=381 Mesorhizobium loti])</td></tr>
-	~~or leave the SCENE parameter empty for the default display.~~	+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyridoxal_4-dehydrogenase Pyridoxal 4-dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.107 1.1.1.107] </span></td></tr>
-	~~-->~~	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rwb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rwb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rwb RCSB], [http://www.ebi.ac.uk/pdbsum/3rwb PDBsum]</span></td></tr>
-	~~{{STRUCTURE_3rwb\| PDB=3rwb \| SCENE= }}~~	+	<table>
-		+	__TOC__
-	===Crystal structure of complex of 4PAL (4-Pyridoxolactone) and PLDH (tetrameric pyridoxal 4-dehydrogenase) from Mesorhizobium loti===	+	</StructureSection>
-		+
-		+
-	==~~About this Structure~~==	+
-	[[3rwb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mesorhizobium_loti Mesorhizobium loti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RWB OCA].	+
	[[Category: Mesorhizobium loti]]		[[Category: Mesorhizobium loti]]
	[[Category: Pyridoxal 4-dehydrogenase]]		[[Category: Pyridoxal 4-dehydrogenase]]

OCA at 09:21, 9 May 2012

2012-05-09T09:21:46Z

←Older revision		Revision as of 09:21, 9 May 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3rwb.jpg\|left\|200px]]

-	The ~~entry 3rwb~~ is ~~ON HOLD~~ ~~until May 08 2013~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3rwb", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3rwb\| PDB=3rwb \| SCENE= }}

-	~~Authors: Chu, H.N.~~	+	===Crystal structure of complex of 4PAL (4-Pyridoxolactone) and PLDH (tetrameric pyridoxal 4-dehydrogenase) from Mesorhizobium loti===

-	~~Description: Crystal~~ structure ~~of complex of 4PAL (~~4-~~Pyridoxolactone) and PLDH (tetrameric pyridoxal~~ 4-dehydrogenase~~) from Mesorhizobium loti~~	+
		+	==About this Structure==
		+	[[3rwb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mesorhizobium_loti Mesorhizobium loti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RWB OCA].
		+	[[Category: Mesorhizobium loti]]
		+	[[Category: Pyridoxal 4-dehydrogenase]]
		+	[[Category: Chu, H N.]]
		+	[[Category: 4-pyridoxolactone]]
		+	[[Category: Nad+]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Pyridoxal]]
		+	[[Category: Short chain dehydrogenase/reductase]]

OCA at 04:50, 8 June 2011

2011-06-08T04:50:57Z

←Older revision		Revision as of 04:50, 8 June 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3rwb is ON HOLD	+	The entry 3rwb is ON HOLD until May 08 2013

	Authors: Chu, H.N.		Authors: Chu, H.N.

	Description: Crystal structure of complex of 4PAL (4-Pyridoxolactone) and PLDH (tetrameric pyridoxal 4-dehydrogenase) from Mesorhizobium loti		Description: Crystal structure of complex of 4PAL (4-Pyridoxolactone) and PLDH (tetrameric pyridoxal 4-dehydrogenase) from Mesorhizobium loti

OCA: Protected "3rwb" [edit=sysop:move=sysop]

2011-05-18T05:17:11Z

Protected "3rwb" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:17, 18 May 2011

OCA: New page: '''Unreleased structure''' The entry 3rwb is ON HOLD Authors: Chu, H.N. Description: Crystal structure of complex of 4PAL (4-Pyridoxolactone) and PLDH (tetrameric pyridoxal 4-dehydroge...

2011-05-18T05:17:10Z

New page: '''Unreleased structure''' The entry 3rwb is ON HOLD Authors: Chu, H.N. Description: Crystal structure of complex of 4PAL (4-Pyridoxolactone) and PLDH (tetrameric pyridoxal 4-dehydroge...

New page

'''Unreleased structure'''

The entry 3rwb is ON HOLD

Authors: Chu, H.N.

Description: Crystal structure of complex of 4PAL (4-Pyridoxolactone) and PLDH (tetrameric pyridoxal 4-dehydrogenase) from Mesorhizobium loti