3shd - Revision history

OCA at 08:36, 20 March 2024

2024-03-20T08:36:48Z

←Older revision		Revision as of 08:36, 20 March 2024
Line 3:		Line 3:
	<StructureSection load='3shd' size='340' side='right'caption='[[3shd]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3shd' size='340' side='right'caption='[[3shd]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3shd]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Ecok1 Ecok1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SHD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SHD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3shd]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_APEC_O1 Escherichia coli APEC O1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SHD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SHD FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>~~, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~nudJ, Ecok1_10240, APECO1_216 ([https~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=405955 ECOK1])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3shd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3shd OCA], [https://pdbe.org/3shd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3shd RCSB], [https://www.ebi.ac.uk/pdbsum/3shd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3shd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3shd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3shd OCA], [https://pdbe.org/3shd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3shd RCSB], [https://www.ebi.ac.uk/pdbsum/3shd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3shd ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/NUDJ_ECOK1 NUDJ_ECOK1]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ecok1~~]]	+	[[Category: Escherichia coli APEC O1]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Hong~~, M K~~]]	+	[[Category: Hong MK]]
-	[[Category: Kang~~, L W~~]]	+	[[Category: Kang LW]]
-	[[Category: Kim~~, J K]]~~	+	[[Category: Kim JK]]
-	~~[[Category: Dephosphorylation]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Nudix fold]]~~	+
-	~~[[Category: Nudix motif~~]]	+

OCA at 07:56, 29 June 2022

2022-06-29T07:56:16Z

←Older revision		Revision as of 07:56, 29 June 2022
Line 1:		Line 1:

	==Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1==		==Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1==
-	<StructureSection load='3shd' size='340' side='right' caption='[[3shd]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='3shd' size='340' side='right'caption='[[3shd]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3shd]] is a 12 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Ecok1 Ecok1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SHD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3SHD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3shd]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecok1 Ecok1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SHD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SHD FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nudJ, Ecok1_10240, APECO1_216 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=405955 ECOK1])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nudJ, Ecok1_10240, APECO1_216 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=405955 ECOK1])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3shd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3shd OCA], [~~http~~://pdbe.org/3shd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3shd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3shd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3shd ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3shd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3shd OCA], [https://pdbe.org/3shd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3shd RCSB], [https://www.ebi.ac.uk/pdbsum/3shd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3shd ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Ecok1]]		[[Category: Ecok1]]
		+	[[Category: Large Structures]]
	[[Category: Hong, M K]]		[[Category: Hong, M K]]
	[[Category: Kang, L W]]		[[Category: Kang, L W]]

OCA at 15:38, 11 August 2016

2016-08-11T15:38:44Z

←Older revision		Revision as of 15:38, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1==		==Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1==
	<StructureSection load='3shd' size='340' side='right' caption='[[3shd]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3shd' size='340' side='right' caption='[[3shd]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3shd]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia coli~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SHD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SHD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3shd]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecok1 Ecok1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SHD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SHD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nudJ, Ecok1_10240, APECO1_216 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~562 Escherichia coli~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nudJ, Ecok1_10240, APECO1_216 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=405955 ECOK1])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3shd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3shd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3shd RCSB], [http://www.ebi.ac.uk/pdbsum/3shd PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3shd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3shd OCA], [http://pdbe.org/3shd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3shd RCSB], [http://www.ebi.ac.uk/pdbsum/3shd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3shd ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia coli~~]]	+	[[Category: Ecok1]]
	[[Category: Hong, M K]]		[[Category: Hong, M K]]
	[[Category: Kang, L W]]		[[Category: Kang, L W]]

OCA at 10:53, 4 January 2015

2015-01-04T10:53:57Z

←Older revision		Revision as of 10:53, 4 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3shd]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SHD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SHD FirstGlance]. <br>		<table><tr><td colspan='2'>[[3shd]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SHD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SHD FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nudJ, Ecok1_10240, APECO1_216 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nudJ, Ecok1_10240, APECO1_216 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3shd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3shd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3shd RCSB], [http://www.ebi.ac.uk/pdbsum/3shd PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3shd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3shd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3shd RCSB], [http://www.ebi.ac.uk/pdbsum/3shd PDBsum]</span></td></tr>
-	<table>	+	</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Hong, M K.]]	+	[[Category: Hong, M K]]
-	[[Category: Kang, L W.]]	+	[[Category: Kang, L W]]
-	[[Category: Kim, J K.]]	+	[[Category: Kim, J K]]
	[[Category: Dephosphorylation]]		[[Category: Dephosphorylation]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Nudix fold]]		[[Category: Nudix fold]]
	[[Category: Nudix motif]]		[[Category: Nudix motif]]

OCA at 05:23, 5 June 2014

2014-06-05T05:23:25Z

←Older revision		Revision as of 05:23, 5 June 2014
Line 1:		Line 1:
-	~~[[Image:3shd.jpg\|left\|200px]]~~	+	==Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1==
-		+	<StructureSection load='3shd' size='340' side='right' caption='[[3shd]], [[Resolution\|resolution]] 2.50Å' scene=''>
-	~~{{STRUCTURE_3shd\| PDB=3shd \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3shd]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SHD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SHD FirstGlance]. <br>
-	===Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nudJ, Ecok1_10240, APECO1_216 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3shd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3shd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3shd RCSB], [http://www.ebi.ac.uk/pdbsum/3shd PDBsum]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[3shd]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SHD OCA].	+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Hong, M K.]]		[[Category: Hong, M K.]]

OCA at 05:53, 27 June 2012

2012-06-27T05:53:16Z

←Older revision		Revision as of 05:53, 27 June 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3shd.jpg\|left\|200px]]

-	~~The entry~~ 3shd ~~is ON HOLD~~ ~~until Paper Publication~~	+	{{STRUCTURE_3shd\| PDB=3shd \| SCENE= }}

-	~~Authors: Hong~~, ~~M.K.~~, ~~Kim, J.~~K~~., Kang, L.W.~~	+	===Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1===

-	~~Description: Crystal~~ structure ~~of Nudix hydrolase Orf153, ymfB,~~ from Escherichia coli K-1	+
		+	==About this Structure==
		+	[[3shd]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SHD OCA].
		+	[[Category: Escherichia coli]]
		+	[[Category: Hong, M K.]]
		+	[[Category: Kang, L W.]]
		+	[[Category: Kim, J K.]]
		+	[[Category: Dephosphorylation]]
		+	[[Category: Hydrolase]]
		+	[[Category: Nudix fold]]
		+	[[Category: Nudix motif]]

OCA at 07:05, 24 August 2011

2011-08-24T07:05:14Z

←Older revision		Revision as of 07:05, 24 August 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3shd is ON HOLD	+	The entry 3shd is ON HOLD until Paper Publication

	Authors: Hong, M.K., Kim, J.K., Kang, L.W.		Authors: Hong, M.K., Kim, J.K., Kang, L.W.

	Description: Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1		Description: Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1

OCA: Protected "3shd" [edit=sysop:move=sysop]

2011-06-22T16:24:47Z

Protected "3shd" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:24, 22 June 2011

OCA: New page: '''Unreleased structure''' The entry 3shd is ON HOLD Authors: Hong, M.K., Kim, J.K., Kang, L.W. Description: Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-...

2011-06-22T16:24:46Z

New page: '''Unreleased structure''' The entry 3shd is ON HOLD Authors: Hong, M.K., Kim, J.K., Kang, L.W. Description: Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-...

New page

'''Unreleased structure'''

The entry 3shd is ON HOLD

Authors: Hong, M.K., Kim, J.K., Kang, L.W.

Description: Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1