3ta7 - Revision history

OCA at 10:06, 1 March 2024

2024-03-01T10:06:57Z

←Older revision		Revision as of 10:06, 1 March 2024
Line 3:		Line 3:
	<StructureSection load='3ta7' size='340' side='right'caption='[[3ta7]], [[Resolution\|resolution]] 1.48Å' scene=''>		<StructureSection load='3ta7' size='340' side='right'caption='[[3ta7]], [[Resolution\|resolution]] 1.48Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ta7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Candidatus_korarchaeum_cryptofilum_opf8~~ Candidatus ~~korarchaeum~~ cryptofilum ~~opf8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TA7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TA7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ta7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Candidatus_Korarchaeum_cryptofilum_OPF8 Candidatus Korarchaeum cryptofilum OPF8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TA7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TA7 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>~~, ~~<scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.48Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[3p4h\|3p4h]], [[3ta5\|3ta5]]~~</~~div~~><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">Kcr_0736 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=374847 Candidatus Korarchaeum cryptofilum OPF8])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ta7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ta7 OCA], [https://pdbe.org/3ta7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ta7 RCSB], [https://www.ebi.ac.uk/pdbsum/3ta7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ta7 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ta7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ta7 OCA], [https://pdbe.org/3ta7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ta7 RCSB], [https://www.ebi.ac.uk/pdbsum/3ta7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ta7 ProSAT]</span></td></tr>
	</table>		</table>
-	~~<div style~~=~~"background-color:#fffaf0;">~~	+	== Function ==
-	=~~= Publication Abstract from PubMed~~ ==	+	[https://www.uniprot.org/uniprot/B1L4V6_KORCO B1L4V6_KORCO]
-	LigD 3'-phosphoesterase (PE) enzymes perform end-healing reactions at DNA breaks. Here we characterize the 3'-ribonucleoside-resecting activity of Candidatus Korarchaeum PE. CkoPE prefers a single-stranded substrate versus a primer-template. Activity is abolished by vanadate (10 mM), but is less sensitive to phosphate (IC(50) 50 mM) or chloride (IC(50) 150 mM). The metal requirement is satisfied by manganese, cobalt, copper or cadmium, but not magnesium, calcium, nickel or zinc. Insights to CkoPE metal specificity were gained by solving new 1.5 A crystal structures of CkoPE in complexes with Co(2+) and Zn(2+). His9, His15 and Asp17 coordinate cobalt in an octahedral complex that includes a phosphate anion, which is in turn coordinated by Arg19 and His51. The cobalt and phosphate positions and the atomic contacts in the active site are virtually identical to those in the CkoPE.Mn(2+) structure. By contrast, Zn(2+) binds in the active site in a tetrahedral complex, wherein the position, orientation and atomic contacts of the phosphate are shifted and its interaction with His51 is lost. We conclude that: ~~(i) PE selectively binds to 'soft' metals in either productive or non-productive modes and (ii) PE catalysis depends acutely on proper metal and scissile phosphate geometry.~~	+
-		+
-	Structural insights to the metal specificity of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family.,Das U, Smith P, Shuman S Nucleic Acids Res. 2012 Jan 1;40(2):828-36. Epub 2011 Sep 28. PMID:21965539<ref>PMID:21965539</~~ref>~~	+
-		+
-	~~From MEDLINE®~~/~~PubMed®, a database of the U~~.S. ~~National Library of Medicine.<br>~~	+
-	</~~div>~~	+
-	~~<div class="pdbe-citations 3ta7" style="background-color:#fffaf0;"><~~/~~div>~~	+

	==See Also==		==See Also==
	*[[DNA ligase 3D structures\|DNA ligase 3D structures]]		*[[DNA ligase 3D structures\|DNA ligase 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Candidatus ~~korarchaeum~~ cryptofilum ~~opf8~~]]	+	[[Category: Candidatus Korarchaeum cryptofilum OPF8]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Das, U]]	+	[[Category: Das U]]
-	[[Category: Shuman, S]]	+	[[Category: Shuman S]]
-	[[Category: Smith, P]]	+	[[Category: Smith P]]
-	~~[[Category: 3'-phosphoesterase]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 16:49, 6 July 2022

2022-07-06T16:49:31Z

←Older revision		Revision as of 16:49, 6 July 2022
Line 1:		Line 1:

	==Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family==		==Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family==
-	<StructureSection load='3ta7' size='340' side='right' caption='[[3ta7]], [[Resolution\|resolution]] 1.48Å' scene=''>	+	<StructureSection load='3ta7' size='340' side='right'caption='[[3ta7]], [[Resolution\|resolution]] 1.48Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ta7]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Candidatus_korarchaeum_cryptofilum_opf8 Candidatus korarchaeum cryptofilum opf8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TA7 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3TA7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ta7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Candidatus_korarchaeum_cryptofilum_opf8 Candidatus korarchaeum cryptofilum opf8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TA7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TA7 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3p4h\|3p4h]], [[3ta5\|3ta5]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3p4h\|3p4h]], [[3ta5\|3ta5]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Kcr_0736 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=374847 Candidatus Korarchaeum cryptofilum OPF8])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Kcr_0736 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=374847 Candidatus Korarchaeum cryptofilum OPF8])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ta7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ta7 OCA], [~~http~~://pdbe.org/3ta7 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3ta7 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3ta7 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3ta7 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ta7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ta7 OCA], [https://pdbe.org/3ta7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ta7 RCSB], [https://www.ebi.ac.uk/pdbsum/3ta7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ta7 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 20:		Line 20:

	==See Also==		==See Also==
-	*[[DNA ligase\|DNA ligase]]	+	*[[DNA ligase 3D structures\|DNA ligase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 26:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Candidatus korarchaeum cryptofilum opf8]]		[[Category: Candidatus korarchaeum cryptofilum opf8]]
		+	[[Category: Large Structures]]
	[[Category: Das, U]]		[[Category: Das, U]]
	[[Category: Shuman, S]]		[[Category: Shuman, S]]

OCA at 10:00, 11 August 2016

2016-08-11T10:00:11Z

←Older revision		Revision as of 10:00, 11 August 2016
Line 1:		Line 1:
		+
	==Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family==		==Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family==
	<StructureSection load='3ta7' size='340' side='right' caption='[[3ta7]], [[Resolution\|resolution]] 1.48Å' scene=''>		<StructureSection load='3ta7' size='340' side='right' caption='[[3ta7]], [[Resolution\|resolution]] 1.48Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ta7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~"candidatus_korarchaeum_cryptofilum"_elkins_et_al._2008 "candidatus~~ korarchaeum cryptofilum~~" elkins et al. 2008~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TA7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TA7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ta7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Candidatus_korarchaeum_cryptofilum_opf8 Candidatus korarchaeum cryptofilum opf8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TA7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TA7 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3p4h\|3p4h]], [[3ta5\|3ta5]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3p4h\|3p4h]], [[3ta5\|3ta5]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Kcr_0736 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~498846 "~~Candidatus Korarchaeum cryptofilum~~" Elkins et al. 2008~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Kcr_0736 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=374847 Candidatus Korarchaeum cryptofilum OPF8])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ta7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ta7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ta7 RCSB], [http://www.ebi.ac.uk/pdbsum/3ta7 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ta7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ta7 OCA], [http://pdbe.org/3ta7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ta7 RCSB], [http://www.ebi.ac.uk/pdbsum/3ta7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ta7 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3ta7" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 23:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Candidatus korarchaeum cryptofilum ~~elkins et al. 2008~~]]	+	[[Category: Candidatus korarchaeum cryptofilum opf8]]
	[[Category: Das, U]]		[[Category: Das, U]]
	[[Category: Shuman, S]]		[[Category: Shuman, S]]

OCA at 10:25, 4 January 2015

2015-01-04T10:25:26Z

←Older revision		Revision as of 10:25, 4 January 2015
Line 1:		Line 1:
-	~~{{STRUCTURE_3ta7\| PDB=3ta7 \| SCENE= }}~~	+	==Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family==
-	===Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family===	+	<StructureSection load='3ta7' size='340' side='right' caption='[[3ta7]], [[Resolution\|resolution]] 1.48Å' scene=''>
-	~~{{ABSTRACT_PUBMED_21965539}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3ta7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"candidatus_korarchaeum_cryptofilum"_elkins_et_al._2008 "candidatus korarchaeum cryptofilum" elkins et al. 2008]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TA7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TA7 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3p4h\|3p4h]], [[3ta5\|3ta5]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Kcr_0736 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=498846 "Candidatus Korarchaeum cryptofilum" Elkins et al. 2008])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ta7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ta7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ta7 RCSB], [http://www.ebi.ac.uk/pdbsum/3ta7 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	LigD 3'-phosphoesterase (PE) enzymes perform end-healing reactions at DNA breaks. Here we characterize the 3'-ribonucleoside-resecting activity of Candidatus Korarchaeum PE. CkoPE prefers a single-stranded substrate versus a primer-template. Activity is abolished by vanadate (10 mM), but is less sensitive to phosphate (IC(50) 50 mM) or chloride (IC(50) 150 mM). The metal requirement is satisfied by manganese, cobalt, copper or cadmium, but not magnesium, calcium, nickel or zinc. Insights to CkoPE metal specificity were gained by solving new 1.5 A crystal structures of CkoPE in complexes with Co(2+) and Zn(2+). His9, His15 and Asp17 coordinate cobalt in an octahedral complex that includes a phosphate anion, which is in turn coordinated by Arg19 and His51. The cobalt and phosphate positions and the atomic contacts in the active site are virtually identical to those in the CkoPE.Mn(2+) structure. By contrast, Zn(2+) binds in the active site in a tetrahedral complex, wherein the position, orientation and atomic contacts of the phosphate are shifted and its interaction with His51 is lost. We conclude that: (i) PE selectively binds to 'soft' metals in either productive or non-productive modes and (ii) PE catalysis depends acutely on proper metal and scissile phosphate geometry.

-	~~==About this Structure==~~	+	Structural insights to the metal specificity of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family.,Das U, Smith P, Shuman S Nucleic Acids Res. 2012 Jan 1;40(2):828-36. Epub 2011 Sep 28. PMID:21965539<ref>PMID:21965539</ref>
-	~~[[3ta7]] is a~~ 1 ~~chain structure with sequence from [http~~:~~//en~~.~~wikipedia~~.~~org/wiki/"candidatus_korarchaeum_cryptofilum"_elkins_et_al._2008 "candidatus korarchaeum cryptofilum" elkins et al. 2008]. Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=3TA7 OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
	*[[DNA ligase\|DNA ligase]]		*[[DNA ligase\|DNA ligase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	~~<ref group="xtra">PMID:021965539</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Candidatus korarchaeum cryptofilum elkins et al. 2008]]		[[Category: Candidatus korarchaeum cryptofilum elkins et al. 2008]]
-	[[Category: Das, U.]]	+	[[Category: Das, U]]
-	[[Category: Shuman, S.]]	+	[[Category: Shuman, S]]
-	[[Category: Smith, P.]]	+	[[Category: Smith, P]]
	[[Category: 3'-phosphoesterase]]		[[Category: 3'-phosphoesterase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 05:21, 9 April 2014

2014-04-09T05:21:36Z

←Older revision		Revision as of 05:21, 9 April 2014
Line 1:		Line 1:
-	[[Image:3ta7.png\|left\|200px]]
-
	{{STRUCTURE_3ta7\| PDB=3ta7 \| SCENE= }}		{{STRUCTURE_3ta7\| PDB=3ta7 \| SCENE= }}
-
	===Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family===		===Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family===
-
	{{ABSTRACT_PUBMED_21965539}}		{{ABSTRACT_PUBMED_21965539}}

	==About this Structure==		==About this Structure==
-	[[3ta7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Candidatus_korarchaeum_cryptofilum_opf8 Candidatus~~ korarchaeum cryptofilum ~~opf8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TA7 OCA].	+	[[3ta7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"candidatus_korarchaeum_cryptofilum"_elkins_et_al._2008 "candidatus korarchaeum cryptofilum" elkins et al. 2008]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TA7 OCA].

	==See Also==		==See Also==
Line 14:		Line 10:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:021965539</ref><references group="xtra"/>	+	<ref group="xtra">PMID:021965539</ref><references group="xtra"/><references/>
-	[[Category: Candidatus korarchaeum cryptofilum ~~opf8~~]]	+	[[Category: Candidatus korarchaeum cryptofilum elkins et al. 2008]]
	[[Category: Das, U.]]		[[Category: Das, U.]]
	[[Category: Shuman, S.]]		[[Category: Shuman, S.]]

OCA at 19:00, 20 October 2012

2012-10-20T19:00:39Z

←Older revision		Revision as of 19:00, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[3ta7]] is a 1 chain structure ~~of [[DNA ligase]]~~ with sequence from [http://en.wikipedia.org/wiki/Candidatus_korarchaeum_cryptofilum_opf8 Candidatus korarchaeum cryptofilum opf8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TA7 OCA].	+	[[3ta7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Candidatus_korarchaeum_cryptofilum_opf8 Candidatus korarchaeum cryptofilum opf8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TA7 OCA].

	==See Also==		==See Also==

OCA at 05:59, 27 July 2012

2012-07-27T05:59:48Z

←Older revision		Revision as of 05:59, 27 July 2012
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	[[Image:3ta7.png\|left\|200px]]		[[Image:3ta7.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3ta7", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3ta7\| PDB=3ta7 \| SCENE= }}		{{STRUCTURE_3ta7\| PDB=3ta7 \| SCENE= }}

	===Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family===		===Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_21965539}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 21965539 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_21965539}}		{{ABSTRACT_PUBMED_21965539}}

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	==See Also==		==See Also==
-	*[[DNA ligase]]	+	*[[DNA ligase\|DNA ligase]]

	==Reference==		==Reference==

OCA at 06:34, 1 February 2012

2012-02-01T06:34:20Z

←Older revision		Revision as of 06:34, 1 February 2012
Line 11:		Line 11:
	===Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family===		===Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_21965539}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 21965539 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_21965539}}

	==About this Structure==		==About this Structure==
-	[[3ta7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Candidatus_korarchaeum_cryptofilum_opf8 Candidatus korarchaeum cryptofilum opf8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TA7 OCA].	+	[[3ta7]] is a 1 chain structure of [[DNA ligase]] with sequence from [http://en.wikipedia.org/wiki/Candidatus_korarchaeum_cryptofilum_opf8 Candidatus korarchaeum cryptofilum opf8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TA7 OCA].
		+
		+	==See Also==
		+	*[[DNA ligase]]
		+
		+	==Reference==
		+	<ref group="xtra">PMID:021965539</ref><references group="xtra"/>
	[[Category: Candidatus korarchaeum cryptofilum opf8]]		[[Category: Candidatus korarchaeum cryptofilum opf8]]
	[[Category: Das, U.]]		[[Category: Das, U.]]

OCA at 09:46, 30 October 2011

2011-10-30T09:46:12Z

←Older revision		Revision as of 09:46, 30 October 2011
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-	~~'''Unreleased structure'''~~	+	[[Image:3ta7.png\|left\|200px]]

-	The ~~entry 3ta7~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3ta7", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3ta7\| PDB=3ta7 \| SCENE= }}

-	~~Authors: Das, U., Smith, P., Shuman, S.~~	+	===Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family===

-	~~Description: Zinc bound~~ structure ~~of an archaeal member of the LigD~~ 3'-phosphoesterase ~~DNA repair enzyme family~~	+
		+	==About this Structure==
		+	[[3ta7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Candidatus_korarchaeum_cryptofilum_opf8 Candidatus korarchaeum cryptofilum opf8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TA7 OCA].
		+	[[Category: Candidatus korarchaeum cryptofilum opf8]]
		+	[[Category: Das, U.]]
		+	[[Category: Shuman, S.]]
		+	[[Category: Smith, P.]]
		+	[[Category: 3'-phosphoesterase]]
		+	[[Category: Hydrolase]]

OCA at 07:09, 24 August 2011

2011-08-24T07:09:35Z

←Older revision		Revision as of 07:09, 24 August 2011
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3ta7 is ON HOLD	+	The entry 3ta7 is ON HOLD until Paper Publication

	Authors: Das, U., Smith, P., Shuman, S.		Authors: Das, U., Smith, P., Shuman, S.

	Description: Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family		Description: Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family