3td0 - Revision history

OCA at 08:37, 20 March 2024

2024-03-20T08:37:41Z

←Older revision		Revision as of 08:37, 20 March 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3td0]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TD0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TD0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3td0]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TD0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TD0 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=5BU:5-BROMO-URIDINE-5-MONOPHOSPHATE'>5BU</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5BU:5-BROMO-URIDINE-5-MONOPHOSPHATE'>5BU</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;~~'>~~[[3bnl\|3bnl]], [[3td1\|3td1]]~~</~~div~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3td0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3td0 OCA], [https://pdbe.org/3td0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3td0 RCSB], [https://www.ebi.ac.uk/pdbsum/3td0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3td0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3td0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3td0 OCA], [https://pdbe.org/3td0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3td0 RCSB], [https://www.ebi.ac.uk/pdbsum/3td0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3td0 ProSAT]</span></td></tr>
	</table>		</table>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Resistance explained: The crystal structures of the ribosomal decoding A site with an A1408G antibiotic-resistance mutation were solved in the presence and absence of the aminoglycoside geneticin (see structure, geneticin carbon framework in yellow). These structures show how bacteria acquire high-level resistance against aminoglycosides by the mutation.
-
-	A Structural Basis for the Antibiotic Resistance Conferred by an A1408G Mutation in 16S rRNA and for the Antiprotozoal Activity of Aminoglycosides.,Kondo J Angew Chem Int Ed Engl. 2011 Nov 23. doi: 10.1002/anie.201106084. PMID:22110016<ref>PMID:22110016</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 3td0" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Kondo, J]]	+	[[Category: Kondo J]]
-	~~[[Category: Decoding]]~~	+
-	~~[[Category: Ribosome]]~~	+
-	~~[[Category: Rna~~]]	+

OCA at 16:52, 6 July 2022

2022-07-06T16:52:34Z

←Older revision		Revision as of 16:52, 6 July 2022
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	<StructureSection load='3td0' size='340' side='right'caption='[[3td0]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3td0' size='340' side='right'caption='[[3td0]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3td0]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TD0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3TD0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3td0]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TD0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TD0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5BU:5-BROMO-URIDINE-5-MONOPHOSPHATE'>5BU</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5BU:5-BROMO-URIDINE-5-MONOPHOSPHATE'>5BU</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bnl\|3bnl]], [[3td1\|3td1]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3bnl\|3bnl]], [[3td1\|3td1]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3td0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3td0 OCA], [~~http~~://pdbe.org/3td0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3td0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3td0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3td0 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3td0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3td0 OCA], [https://pdbe.org/3td0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3td0 RCSB], [https://www.ebi.ac.uk/pdbsum/3td0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3td0 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 16:55, 28 August 2019

2019-08-28T16:55:13Z

←Older revision		Revision as of 16:55, 28 August 2019
Line 1:		Line 1:

	==Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site==		==Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site==
-	<StructureSection load='3td0' size='340' side='right' caption='[[3td0]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='3td0' size='340' side='right'caption='[[3td0]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3td0]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TD0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TD0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3td0]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TD0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TD0 FirstGlance]. <br>
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Kondo, J]]		[[Category: Kondo, J]]
	[[Category: Decoding]]		[[Category: Decoding]]
	[[Category: Ribosome]]		[[Category: Ribosome]]
	[[Category: Rna]]		[[Category: Rna]]

OCA at 17:35, 11 August 2016

2016-08-11T17:35:12Z

←Older revision		Revision as of 17:35, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site==		==Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site==
	<StructureSection load='3td0' size='340' side='right' caption='[[3td0]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3td0' size='340' side='right' caption='[[3td0]], [[Resolution\|resolution]] 1.60Å' scene=''>
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	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5BU:5-BROMO-URIDINE-5-MONOPHOSPHATE'>5BU</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5BU:5-BROMO-URIDINE-5-MONOPHOSPHATE'>5BU</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bnl\|3bnl]], [[3td1\|3td1]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bnl\|3bnl]], [[3td1\|3td1]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3td0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3td0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3td0 RCSB], [http://www.ebi.ac.uk/pdbsum/3td0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3td0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3td0 OCA], [http://pdbe.org/3td0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3td0 RCSB], [http://www.ebi.ac.uk/pdbsum/3td0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3td0 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3td0" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 11:05, 4 January 2015

2015-01-04T11:05:50Z

←Older revision		Revision as of 11:05, 4 January 2015
Line 1:		Line 1:
-	~~{{STRUCTURE_3td0\| PDB=3td0 \| SCENE= }}~~	+	==Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site==
-	===Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site===	+	<StructureSection load='3td0' size='340' side='right' caption='[[3td0]], [[Resolution\|resolution]] 1.60Å' scene=''>
-	~~{{ABSTRACT_PUBMED_22110016}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3td0]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TD0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TD0 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5BU:5-BROMO-URIDINE-5-MONOPHOSPHATE'>5BU</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bnl\|3bnl]], [[3td1\|3td1]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3td0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3td0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3td0 RCSB], [http://www.ebi.ac.uk/pdbsum/3td0 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Resistance explained: The crystal structures of the ribosomal decoding A site with an A1408G antibiotic-resistance mutation were solved in the presence and absence of the aminoglycoside geneticin (see structure, geneticin carbon framework in yellow). These structures show how bacteria acquire high-level resistance against aminoglycosides by the mutation.

-	~~==About this Structure==~~	+	A Structural Basis for the Antibiotic Resistance Conferred by an A1408G Mutation in 16S rRNA and for the Antiprotozoal Activity of Aminoglycosides.,Kondo J Angew Chem Int Ed Engl. 2011 Nov 23. doi: 10.1002/anie.201106084. PMID:22110016<ref>PMID:22110016</ref>
-	~~[[3td0]] is a 2 chain structure~~. ~~Full crystallographic information is available from [http://oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=3TD0 OCA]~~.	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:022110016</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
-	[[Category: Kondo, J.]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Kondo, J]]
	[[Category: Decoding]]		[[Category: Decoding]]
	[[Category: Ribosome]]		[[Category: Ribosome]]
	[[Category: Rna]]		[[Category: Rna]]

OCA at 14:17, 12 March 2014

2014-03-12T14:17:09Z

←Older revision		Revision as of 14:17, 12 March 2014
Line 1:		Line 1:
-	[[Image:3td0.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3td0", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3td0\| PDB=3td0 \| SCENE= }}		{{STRUCTURE_3td0\| PDB=3td0 \| SCENE= }}
-
	===Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site===		===Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_22110016}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 22110016 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_22110016}}		{{ABSTRACT_PUBMED_22110016}}

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	==Reference==		==Reference==
-	<ref group="xtra">PMID:022110016</ref><references group="xtra"/>	+	<ref group="xtra">PMID:022110016</ref><references group="xtra"/><references/>
	[[Category: Kondo, J.]]		[[Category: Kondo, J.]]
	[[Category: Decoding]]		[[Category: Decoding]]
	[[Category: Ribosome]]		[[Category: Ribosome]]
	[[Category: Rna]]		[[Category: Rna]]

OCA at 08:04, 7 December 2011

2011-12-07T08:04:28Z

←Older revision		Revision as of 08:04, 7 December 2011
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3td0.jpg\|left\|200px]]

-	The ~~entry 3td0~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3td0", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3td0\| PDB=3td0 \| SCENE= }}

-	~~Authors: Kondo, J.~~	+	===Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site===

-	~~Description~~: ~~Crystal structure of~~ the ~~bacterial A1408G~~-~~mutant and the protozoa cytoplasmic ribosomal decoding site~~	+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_22110016}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 22110016 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_22110016}}
		+
		+	==About this Structure==
		+	[[3td0]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TD0 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:022110016</ref><references group="xtra"/>
		+	[[Category: Kondo, J.]]
		+	[[Category: Decoding]]
		+	[[Category: Ribosome]]
		+	[[Category: Rna]]

OCA at 05:13, 28 September 2011

2011-09-28T05:13:58Z

←Older revision		Revision as of 05:13, 28 September 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3td0 is ON HOLD	+	The entry 3td0 is ON HOLD until Paper Publication

	Authors: Kondo, J.		Authors: Kondo, J.

	Description: Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site		Description: Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site

OCA at 06:23, 31 August 2011

2011-08-31T06:23:07Z

←Older revision		Revision as of 06:23, 31 August 2011
Line 3:		Line 3:
	The entry 3td0 is ON HOLD		The entry 3td0 is ON HOLD

-	Authors: Kondo, J	+	Authors: Kondo, J.

	Description: Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site		Description: Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site

OCA: Protected "3td0" [edit=sysop:move=sysop]

2011-08-17T05:57:44Z

Protected "3td0" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:57, 17 August 2011