3vyn - Revision history

OCA at 12:42, 8 November 2023

2023-11-08T12:42:25Z

←Older revision		Revision as of 12:42, 8 November 2023
Line 3:		Line 3:
	<StructureSection load='3vyn' size='340' side='right'caption='[[3vyn]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3vyn' size='340' side='right'caption='[[3vyn]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3vyn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus~~ tuberculosis~~" (zopf 1883) klein 1884~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VYN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3vyn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VYN FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[3vyo\|3vyo]], [[3vyp\|3vyp]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">Rv2518c ([https://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=~~5&~~id=1773 "Bacillus tuberculosis" (Zopf 1883) Klein 1884])</td></tr>~~	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Peptidyltransferase Peptidyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.2.12 2.3.2.12] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vyn OCA], [https://pdbe.org/3vyn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vyn RCSB], [https://www.ebi.ac.uk/pdbsum/3vyn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vyn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vyn OCA], [https://pdbe.org/3vyn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vyn RCSB], [https://www.ebi.ac.uk/pdbsum/3vyn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vyn ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/LDT2_MYCTU LDT2_MYCTU] Generates 3->3 cross-links in peptidoglycan, catalyzing the cleavage of the mDap(3)-D-Ala(4) bond of a tetrapeptide donor stem and the formation of a bond between the carbonyl of mDap(3) of the donor stem and the side chain of mDap(3) of the acceptor stem. Is specific for donor substrates containing a stem tetrapeptide since it cannot use pentapeptide stems.<ref>PMID:24041897</ref>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Peptidyltransferase~~]]	+	[[Category: Mycobacterium tuberculosis]]
-	[[Category: Bi~~, L J~~]]	+	[[Category: Bi LJ]]
-	[[Category: Li~~, D F~~]]	+	[[Category: Li DF]]
-	[[Category: Li~~, W J~~]]	+	[[Category: Li WJ]]
-	[[Category: Wang~~, D C]]~~	+	[[Category: Wang DC]]
-	~~[[Category: Beta barrel]]~~	+
-	~~[[Category: Beta-lactam binding]]~~	+
-	~~[[Category: D-transpeptidase]]~~	+
-	~~[[Category: Transferase]]~~	+
-	~~[[Category: Ykud domain~~]]	+

OCA at 19:10, 27 July 2022

2022-07-27T19:10:40Z

←Older revision		Revision as of 19:10, 27 July 2022
Line 1:		Line 1:

	==Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase LdtMt2 N55 truncation mutant (resideus 55-408)==		==Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase LdtMt2 N55 truncation mutant (resideus 55-408)==
-	<StructureSection load='3vyn' size='340' side='right' caption='[[3vyn]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='3vyn' size='340' side='right'caption='[[3vyn]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3vyn]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus tuberculosis" (zopf 1883) klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3VYN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3vyn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus tuberculosis" (zopf 1883) klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VYN FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vyo\|3vyo]], [[3vyp\|3vyp]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3vyo\|3vyo]], [[3vyp\|3vyp]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rv2518c ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 "Bacillus tuberculosis" (Zopf 1883) Klein 1884])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rv2518c ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 "Bacillus tuberculosis" (Zopf 1883) Klein 1884])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Peptidyltransferase Peptidyltransferase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.2.12 2.3.2.12] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Peptidyltransferase Peptidyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.2.12 2.3.2.12] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3vyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vyn OCA], [~~http~~://pdbe.org/3vyn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3vyn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3vyn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3vyn ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vyn OCA], [https://pdbe.org/3vyn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vyn RCSB], [https://www.ebi.ac.uk/pdbsum/3vyn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vyn ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Peptidyltransferase]]		[[Category: Peptidyltransferase]]
	[[Category: Bi, L J]]		[[Category: Bi, L J]]

OCA at 10:04, 11 August 2016

2016-08-11T10:04:54Z

←Older revision		Revision as of 10:04, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase LdtMt2 N55 truncation mutant (resideus 55-408)==		==Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase LdtMt2 N55 truncation mutant (resideus 55-408)==
	<StructureSection load='3vyn' size='340' side='right' caption='[[3vyn]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3vyn' size='340' side='right' caption='[[3vyn]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3vyn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Mycobacterium_tuberculosis Mycobacterium~~ tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VYN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3vyn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus tuberculosis" (zopf 1883) klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VYN FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vyo\|3vyo]], [[3vyp\|3vyp]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vyo\|3vyo]], [[3vyp\|3vyp]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rv2518c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 ~~Mycobacterium~~ tuberculosis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rv2518c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 "Bacillus tuberculosis" (Zopf 1883) Klein 1884])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidyltransferase Peptidyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.2.12 2.3.2.12] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidyltransferase Peptidyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.2.12 2.3.2.12] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vyn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vyn RCSB], [http://www.ebi.ac.uk/pdbsum/3vyn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vyn OCA], [http://pdbe.org/3vyn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3vyn RCSB], [http://www.ebi.ac.uk/pdbsum/3vyn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3vyn ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Mycobacterium tuberculosis]]
	[[Category: Peptidyltransferase]]		[[Category: Peptidyltransferase]]
	[[Category: Bi, L J]]		[[Category: Bi, L J]]

OCA at 14:26, 5 January 2015

2015-01-05T14:26:54Z

←Older revision		Revision as of 14:26, 5 January 2015
Line 1:		Line 1:
-	~~{{STRUCTURE_3vyn\| PDB=3vyn \| SCENE= }}~~	+	==Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase LdtMt2 N55 truncation mutant (resideus 55-408)==
-	===Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase LdtMt2 N55 truncation mutant (resideus 55-408)===	+	<StructureSection load='3vyn' size='340' side='right' caption='[[3vyn]], [[Resolution\|resolution]] 2.50Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[3vyn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VYN FirstGlance]. <br>
-	[[3vyn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYN OCA].	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vyo\|3vyo]], [[3vyp\|3vyp]]</td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rv2518c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 Mycobacterium tuberculosis])</td></tr>
-	==~~Reference~~==	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidyltransferase Peptidyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.2.12 2.3.2.12] </span></td></tr>
-	<~~ref group~~="~~xtra~~">~~PMID~~:~~023588382~~</~~ref~~><~~references group~~="~~xtra~~"/><~~references~~/>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vyn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vyn RCSB], [http://www.ebi.ac.uk/pdbsum/3vyn PDBsum]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
	[[Category: Mycobacterium tuberculosis]]		[[Category: Mycobacterium tuberculosis]]
	[[Category: Peptidyltransferase]]		[[Category: Peptidyltransferase]]
-	[[Category: Bi, L J.]]	+	[[Category: Bi, L J]]
-	[[Category: Li, D F.]]	+	[[Category: Li, D F]]
-	[[Category: Li, W J.]]	+	[[Category: Li, W J]]
-	[[Category: Wang, D C.]]	+	[[Category: Wang, D C]]
	[[Category: Beta barrel]]		[[Category: Beta barrel]]
	[[Category: Beta-lactam binding]]		[[Category: Beta-lactam binding]]

OCA at 15:31, 19 June 2013

2013-06-19T15:31:54Z

←Older revision		Revision as of 15:31, 19 June 2013
Line 1:		Line 1:
-	~~'''Unreleased~~ structure~~'''~~	+	{{STRUCTURE_3vyn\| PDB=3vyn \| SCENE= }}
		+	===Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase LdtMt2 N55 truncation mutant (resideus 55-408)===

-	~~The entry~~ 3vyn is ~~ON HOLD until Paper Publication~~	+	==About this Structure==
		+	[[3vyn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYN OCA].

-	~~Authors~~: Li, W.J., Li, D.F., ~~Bi, L.~~J., Wang, D.C.	+	==Reference==
-		+	<ref group="xtra">PMID:023588382</ref><references group="xtra"/><references/>
-	~~Description~~: ~~Crystal structure of Mycobacterium tuberculosis L,~~D-transpeptidase ~~LdtMt2 N55 truncation mutant (resideus 55-408)~~	+	[[Category: Mycobacterium tuberculosis]]
		+	[[Category: Peptidyltransferase]]
		+	[[Category: Bi, L J.]]
		+	[[Category: Li, D F.]]
		+	[[Category: Li, W J.]]
		+	[[Category: Wang, D C.]]
		+	[[Category: Beta barrel]]
		+	[[Category: Beta-lactam binding]]
		+	[[Category: D-transpeptidase]]
		+	[[Category: Transferase]]
		+	[[Category: Ykud domain]]

OCA at 06:20, 17 October 2012

2012-10-17T06:20:41Z

←Older revision		Revision as of 06:20, 17 October 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3vyn is ON HOLD	+	The entry 3vyn is ON HOLD until Paper Publication

	Authors: Li, W.J., Li, D.F., Bi, L.J., Wang, D.C.		Authors: Li, W.J., Li, D.F., Bi, L.J., Wang, D.C.

	Description: Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase LdtMt2 N55 truncation mutant (resideus 55-408)		Description: Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase LdtMt2 N55 truncation mutant (resideus 55-408)

OCA: Protected "3vyn" [edit=sysop:move=sysop]

2012-10-10T06:41:10Z

Protected "3vyn" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:41, 10 October 2012

OCA: New page: '''Unreleased structure''' The entry 3vyn is ON HOLD Authors: Li, W.J., Li, D.F., Bi, L.J., Wang, D.C. Description: Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase L...

2012-10-10T06:41:09Z

New page: '''Unreleased structure''' The entry 3vyn is ON HOLD Authors: Li, W.J., Li, D.F., Bi, L.J., Wang, D.C. Description: Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase L...

New page

'''Unreleased structure'''

The entry 3vyn is ON HOLD

Authors: Li, W.J., Li, D.F., Bi, L.J., Wang, D.C.

Description: Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase LdtMt2 N55 truncation mutant (resideus 55-408)