3vyv - Revision history

OCA at 12:42, 8 November 2023

2023-11-08T12:42:39Z

←Older revision		Revision as of 12:42, 8 November 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3vyv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._natto Bacillus subtilis subsp. natto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VYV FirstGlance]. <br>		<table><tr><td colspan='2'>[[3vyv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._natto Bacillus subtilis subsp. natto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VYV FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~, ~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.36Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~SEB~~:~~O-BENZYLSULFONYL-SERINE~~'>~~SEB~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SEB:O-BENZYLSULFONYL-SERINE'>SEB</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Subtilisin Subtilisin], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.62 3.4.21.62]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vyv OCA], [https://pdbe.org/3vyv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vyv RCSB], [https://www.ebi.ac.uk/pdbsum/3vyv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vyv ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vyv OCA], [https://pdbe.org/3vyv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vyv RCSB], [https://www.ebi.ac.uk/pdbsum/3vyv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vyv ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/SUBN_BACNA SUBN_BACNA]] Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides. Subtilisin NAT also has fibrinolytic activity.	+	[https://www.uniprot.org/uniprot/SUBN_BACNA SUBN_BACNA] Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides. Subtilisin NAT also has fibrinolytic activity.

	==See Also==		==See Also==
Line 18:		Line 17:
	[[Category: Bacillus subtilis subsp. natto]]		[[Category: Bacillus subtilis subsp. natto]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Subtilisin]]~~	+	[[Category: Fuchita N]]
-	[[Category: Fuchita, N]]	+	[[Category: Kajiwara T]]
-	[[Category: Kajiwara, T]]	+	[[Category: Motoshima H]]
-	[[Category: Motoshima, H]]	+	[[Category: Ueno G]]
-	[[Category: Ueno, G]]	+	[[Category: Ushijima H]]
-	[[Category: Ushijima, H]]	+	[[Category: Watanabe K]]
-	[[Category: Watanabe, K]]	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: O-benzylsulfonyl-serine]]~~	+
-	~~[[Category: Serine protease~~]]	+

OCA at 19:10, 27 July 2022

2022-07-27T19:10:56Z

←Older revision		Revision as of 19:10, 27 July 2022
Line 1:		Line 1:

	==Crystal structure of subtilisin NAT at 1.36==		==Crystal structure of subtilisin NAT at 1.36==
-	<StructureSection load='3vyv' size='340' side='right' caption='[[3vyv]], [[Resolution\|resolution]] 1.36Å' scene=''>	+	<StructureSection load='3vyv' size='340' side='right'caption='[[3vyv]], [[Resolution\|resolution]] 1.36Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3vyv]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._natto Bacillus subtilis subsp. natto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3VYV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3vyv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._natto Bacillus subtilis subsp. natto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VYV FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEB:O-BENZYLSULFONYL-SERINE'>SEB</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEB:O-BENZYLSULFONYL-SERINE'>SEB</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Subtilisin Subtilisin], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.62 3.4.21.62] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Subtilisin Subtilisin], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.62 3.4.21.62] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3vyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vyv OCA], [~~http~~://pdbe.org/3vyv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3vyv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3vyv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3vyv ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vyv OCA], [https://pdbe.org/3vyv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vyv RCSB], [https://www.ebi.ac.uk/pdbsum/3vyv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vyv ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/SUBN_BACNA SUBN_BACNA]] Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides. Subtilisin NAT also has fibrinolytic activity.	+	[[https://www.uniprot.org/uniprot/SUBN_BACNA SUBN_BACNA]] Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides. Subtilisin NAT also has fibrinolytic activity.

	==See Also==		==See Also==
-	*[[Subtilisin\|Subtilisin]]	+	*[[Subtilisin 3D structures\|Subtilisin 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Bacillus subtilis subsp. natto]]		[[Category: Bacillus subtilis subsp. natto]]
		+	[[Category: Large Structures]]
	[[Category: Subtilisin]]		[[Category: Subtilisin]]
	[[Category: Fuchita, N]]		[[Category: Fuchita, N]]

OCA at 13:17, 5 August 2016

2016-08-05T13:17:28Z

←Older revision		Revision as of 13:17, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of subtilisin NAT at 1.36==		==Crystal structure of subtilisin NAT at 1.36==
	<StructureSection load='3vyv' size='340' side='right' caption='[[3vyv]], [[Resolution\|resolution]] 1.36Å' scene=''>		<StructureSection load='3vyv' size='340' side='right' caption='[[3vyv]], [[Resolution\|resolution]] 1.36Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEB:O-BENZYLSULFONYL-SERINE'>SEB</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEB:O-BENZYLSULFONYL-SERINE'>SEB</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Subtilisin Subtilisin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.62 3.4.21.62] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Subtilisin Subtilisin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.62 3.4.21.62] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vyv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vyv RCSB], [http://www.ebi.ac.uk/pdbsum/3vyv PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vyv OCA], [http://pdbe.org/3vyv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3vyv RCSB], [http://www.ebi.ac.uk/pdbsum/3vyv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3vyv ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/SUBN_BACNA SUBN_BACNA]] Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides. Subtilisin NAT also has fibrinolytic activity.		[[http://www.uniprot.org/uniprot/SUBN_BACNA SUBN_BACNA]] Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides. Subtilisin NAT also has fibrinolytic activity.
		+
		+	==See Also==
		+	*[[Subtilisin\|Subtilisin]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 02:47, 25 December 2014

2014-12-25T02:47:44Z

←Older revision		Revision as of 02:47, 25 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3vyv\| PDB=3vyv \| SCENE= }}~~	+	==Crystal structure of subtilisin NAT at 1.36==
-	===Crystal structure of subtilisin NAT at 1.36===	+	<StructureSection load='3vyv' size='340' side='right' caption='[[3vyv]], [[Resolution\|resolution]] 1.36Å' scene=''>
-		+	== Structural highlights ==
-	==Function==	+	<table><tr><td colspan='2'>[[3vyv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._natto Bacillus subtilis subsp. natto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VYV FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEB:O-BENZYLSULFONYL-SERINE'>SEB</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Subtilisin Subtilisin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.62 3.4.21.62] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vyv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vyv RCSB], [http://www.ebi.ac.uk/pdbsum/3vyv PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
	[[http://www.uniprot.org/uniprot/SUBN_BACNA SUBN_BACNA]] Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides. Subtilisin NAT also has fibrinolytic activity.		[[http://www.uniprot.org/uniprot/SUBN_BACNA SUBN_BACNA]] Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides. Subtilisin NAT also has fibrinolytic activity.
-		+	__TOC__
-	~~==About this Structure==~~	+	</StructureSection>
-	[[3vyv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._natto Bacillus subtilis subsp. natto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/~~ocashort?id=3VYV OCA].~~	+
	[[Category: Bacillus subtilis subsp. natto]]		[[Category: Bacillus subtilis subsp. natto]]
	[[Category: Subtilisin]]		[[Category: Subtilisin]]
-	[[Category: Fuchita, N.]]	+	[[Category: Fuchita, N]]
-	[[Category: Kajiwara, T.]]	+	[[Category: Kajiwara, T]]
-	[[Category: Motoshima, H.]]	+	[[Category: Motoshima, H]]
-	[[Category: Ueno, G.]]	+	[[Category: Ueno, G]]
-	[[Category: Ushijima, H.]]	+	[[Category: Ushijima, H]]
-	[[Category: Watanabe, K~~.]]~~	+	[[Category: Watanabe, K]]
-	~~[[Category: Bacillus subtilis subsp. natto~~]]	+
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: O-benzylsulfonyl-serine]]		[[Category: O-benzylsulfonyl-serine]]
	[[Category: Serine protease]]		[[Category: Serine protease]]

OCA at 06:33, 10 October 2013

2013-10-10T06:33:13Z

←Older revision		Revision as of 06:33, 10 October 2013
Line 1:		Line 1:
-	~~'''Unreleased~~ structure~~'''~~	+	{{STRUCTURE_3vyv\| PDB=3vyv \| SCENE= }}
		+	===Crystal structure of subtilisin NAT at 1.36===

-	~~The entry 3vyv~~ is ~~ON HOLD until Paper Publication~~	+	==Function==
		+	[[http://www.uniprot.org/uniprot/SUBN_BACNA SUBN_BACNA]] Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides. Subtilisin NAT also has fibrinolytic activity.

-	~~Authors~~: ~~Ushijima, H,~~ Fuchita, N, Kajiwara, T, Motoshima, H, Ueno, G, Watanabe, K	+	==About this Structure==
-		+	[[3vyv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._natto Bacillus subtilis subsp. natto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VYV OCA].
-	~~Description~~: ~~Crystal structure of subtilisin NAT at 1~~.36	+	[[Category: Bacillus subtilis subsp. natto]]
		+	[[Category: Subtilisin]]
		+	[[Category: Fuchita, N.]]
		+	[[Category: Kajiwara, T.]]
		+	[[Category: Motoshima, H.]]
		+	[[Category: Ueno, G.]]
		+	[[Category: Ushijima, H.]]
		+	[[Category: Watanabe, K.]]
		+	[[Category: Bacillus subtilis subsp. natto]]
		+	[[Category: Hydrolase]]
		+	[[Category: O-benzylsulfonyl-serine]]
		+	[[Category: Serine protease]]

OCA at 10:47, 19 December 2012

2012-12-19T10:47:08Z

←Older revision		Revision as of 10:47, 19 December 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3vyv is ON HOLD	+	The entry 3vyv is ON HOLD until Paper Publication

	Authors: Ushijima, H, Fuchita, N, Kajiwara, T, Motoshima, H, Ueno, G, Watanabe, K		Authors: Ushijima, H, Fuchita, N, Kajiwara, T, Motoshima, H, Ueno, G, Watanabe, K

	Description: Crystal structure of subtilisin NAT at 1.36		Description: Crystal structure of subtilisin NAT at 1.36

OCA: Protected "3vyv" [edit=sysop:move=sysop]

2012-10-10T06:41:23Z

Protected "3vyv" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:41, 10 October 2012

OCA: New page: '''Unreleased structure''' The entry 3vyv is ON HOLD Authors: Ushijima, H, Fuchita, N, Kajiwara, T, Motoshima, H, Ueno, G, Watanabe, K Description: Crystal structure of subtilisin NAT ...

2012-10-10T06:41:22Z

New page: '''Unreleased structure''' The entry 3vyv is ON HOLD Authors: Ushijima, H, Fuchita, N, Kajiwara, T, Motoshima, H, Ueno, G, Watanabe, K Description: Crystal structure of subtilisin NAT ...

New page

'''Unreleased structure'''

The entry 3vyv is ON HOLD

Authors: Ushijima, H, Fuchita, N, Kajiwara, T, Motoshima, H, Ueno, G, Watanabe, K

Description: Crystal structure of subtilisin NAT at 1.36