3w1e - Revision history

OCA at 05:18, 3 August 2022

2022-08-03T05:18:03Z

←Older revision		Revision as of 05:18, 3 August 2022
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	==Structure of FlgT, a flagellar basal body component protein==		==Structure of FlgT, a flagellar basal body component protein==
-	<StructureSection load='3w1e' size='340' side='right' caption='[[3w1e]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='3w1e' size='340' side='right'caption='[[3w1e]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3w1e]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"oceanomonas_alginolytica"_miyamoto_et_al._1961 "oceanomonas alginolytica" miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W1E OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3W1E FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3w1e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"oceanomonas_alginolytica"_miyamoto_et_al._1961 "oceanomonas alginolytica" miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W1E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W1E FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flgT ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=663 "Oceanomonas alginolytica" Miyamoto et al. 1961])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flgT ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=663 "Oceanomonas alginolytica" Miyamoto et al. 1961])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3w1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w1e OCA], [~~http~~://pdbe.org/3w1e PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3w1e RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3w1e PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3w1e ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w1e OCA], [https://pdbe.org/3w1e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w1e RCSB], [https://www.ebi.ac.uk/pdbsum/3w1e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w1e ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</StructureSection>		</StructureSection>
	[[Category: Oceanomonas alginolytica miyamoto et al. 1961]]		[[Category: Oceanomonas alginolytica miyamoto et al. 1961]]
		+	[[Category: Large Structures]]
	[[Category: Homma, M]]		[[Category: Homma, M]]
	[[Category: Imada, K]]		[[Category: Imada, K]]

OCA at 13:28, 11 August 2016

2016-08-11T13:28:21Z

←Older revision		Revision as of 13:28, 11 August 2016
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		+
	==Structure of FlgT, a flagellar basal body component protein==		==Structure of FlgT, a flagellar basal body component protein==
	<StructureSection load='3w1e' size='340' side='right' caption='[[3w1e]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3w1e' size='340' side='right' caption='[[3w1e]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3w1e]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Vibrio_alginolyticus Vibrio alginolyticus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W1E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3W1E FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3w1e]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"oceanomonas_alginolytica"_miyamoto_et_al._1961 "oceanomonas alginolytica" miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W1E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3W1E FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flgT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=663 ~~Vibrio alginolyticus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flgT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=663 "Oceanomonas alginolytica" Miyamoto et al. 1961])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3w1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w1e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3w1e RCSB], [http://www.ebi.ac.uk/pdbsum/3w1e PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3w1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w1e OCA], [http://pdbe.org/3w1e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3w1e RCSB], [http://www.ebi.ac.uk/pdbsum/3w1e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3w1e ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3w1e" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibrio alginolyticus~~]]	+	[[Category: Oceanomonas alginolytica miyamoto et al. 1961]]
	[[Category: Homma, M]]		[[Category: Homma, M]]
	[[Category: Imada, K]]		[[Category: Imada, K]]

OCA at 10:26, 4 January 2015

2015-01-04T10:26:48Z

←Older revision		Revision as of 10:26, 4 January 2015
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-	~~{{STRUCTURE_3w1e\| PDB=3w1e \| SCENE= }}~~	+	==Structure of FlgT, a flagellar basal body component protein==
-	===Structure of FlgT, a flagellar basal body component protein===	+	<StructureSection load='3w1e' size='340' side='right' caption='[[3w1e]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~{{ABSTRACT_PUBMED_23530206}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3w1e]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_alginolyticus Vibrio alginolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W1E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3W1E FirstGlance]. <br>
		+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flgT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=663 Vibrio alginolyticus])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3w1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w1e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3w1e RCSB], [http://www.ebi.ac.uk/pdbsum/3w1e PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Flagellar motility is a key factor for bacterial survival and growth in fluctuating environments. The polar flagellum of a marine bacterium, Vibrio alginolyticus, is driven by sodium ion influx and rotates approximately six times faster than the proton-driven motor of Escherichia coli. The basal body of the sodium motor has two unique ring structures, the T ring and the H ring. These structures are essential for proper assembly of the stator unit into the basal body and to stabilize the motor. FlgT, which is a flagellar protein specific for Vibrio sp., is required to form and stabilize both ring structures. Here, we report the crystal structure of FlgT at 2.0-A resolution. FlgT is composed of three domains, the N-terminal domain (FlgT-N), the middle domain (FlgT-M), and the C-terminal domain (FlgT-C). FlgT-M is similar to the N-terminal domain of TolB, and FlgT-C resembles the N-terminal domain of FliI and the alpha/beta subunits of F1-ATPase. To elucidate the role of each domain, we prepared domain deletion mutants of FlgT and analyzed their effects on the basal-body ring formation. The results suggest that FlgT-N contributes to the construction of the H-ring structure, and FlgT-M mediates the T-ring association on the LP ring. FlgT-C is not essential but stabilizes the H-ring structure. On the basis of these results, we propose an assembly mechanism for the basal-body rings and the stator units of the sodium-driven flagellar motor.

-	~~==About this Structure==~~	+	Insight into the assembly mechanism in the supramolecular rings of the sodium-driven Vibrio flagellar motor from the structure of FlgT.,Terashima H, Li N, Sakuma M, Koike M, Kojima S, Homma M, Imada K Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):6133-8. doi:, 10.1073/pnas.1222655110. Epub 2013 Mar 25. PMID:23530206<ref>PMID:23530206</ref>
-	~~[[3w1e]] is a 1 chain~~ structure ~~with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Vibrio_alginolyticus Vibrio alginolyticus]~~. ~~Full crystallographic information is available from [http~~:/~~/oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=3W1E OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:023530206</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Vibrio alginolyticus]]		[[Category: Vibrio alginolyticus]]
-	[[Category: Homma, M.]]	+	[[Category: Homma, M]]
-	[[Category: Imada, K.]]	+	[[Category: Imada, K]]
-	[[Category: Sakuma, M.]]	+	[[Category: Sakuma, M]]
-	[[Category: Terashima, H.]]	+	[[Category: Terashima, H]]
	[[Category: H-ring formation]]		[[Category: H-ring formation]]
	[[Category: Motor protein]]		[[Category: Motor protein]]
	[[Category: The flagellar basal body]]		[[Category: The flagellar basal body]]

OCA at 06:46, 14 August 2013

2013-08-14T06:46:53Z

←Older revision		Revision as of 06:46, 14 August 2013
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	{{STRUCTURE_3w1e\| PDB=3w1e \| SCENE= }}		{{STRUCTURE_3w1e\| PDB=3w1e \| SCENE= }}
	===Structure of FlgT, a flagellar basal body component protein===		===Structure of FlgT, a flagellar basal body component protein===
		+	{{ABSTRACT_PUBMED_23530206}}

	==About this Structure==		==About this Structure==
	[[3w1e]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_alginolyticus Vibrio alginolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W1E OCA].		[[3w1e]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_alginolyticus Vibrio alginolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W1E OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:023530206</ref><references group="xtra"/><references/>
	[[Category: Vibrio alginolyticus]]		[[Category: Vibrio alginolyticus]]
	[[Category: Homma, M.]]		[[Category: Homma, M.]]

OCA at 01:40, 4 April 2013

2013-04-04T01:40:32Z

←Older revision		Revision as of 01:40, 4 April 2013
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{STRUCTURE_3w1e\| PDB=3w1e \| SCENE= }}
		+	===Structure of FlgT, a flagellar basal body component protein===

-	~~The entry~~ 3w1e is ~~ON HOLD until Paper Publication~~	+	==About this Structure==
-		+	[[3w1e]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_alginolyticus Vibrio alginolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W1E OCA].
-	~~Authors~~: ~~Terashima, H~~.~~, Sakuma, M~~., Homma, M., Imada, K.	+	[[Category: Vibrio alginolyticus]]
-		+	[[Category: Homma, M.]]
-	~~Description~~: ~~Structure of FlgT~~, a flagellar basal body ~~component protein~~	+	[[Category: Imada, K.]]
		+	[[Category: Sakuma, M.]]
		+	[[Category: Terashima, H.]]
		+	[[Category: H-ring formation]]
		+	[[Category: Motor protein]]
		+	[[Category: The flagellar basal body]]

OCA at 10:47, 19 December 2012

2012-12-19T10:47:29Z

←Older revision		Revision as of 10:47, 19 December 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3w1e is ON HOLD	+	The entry 3w1e is ON HOLD until Paper Publication

	Authors: Terashima, H., Sakuma, M., Homma, M., Imada, K.		Authors: Terashima, H., Sakuma, M., Homma, M., Imada, K.

	Description: Structure of FlgT, a flagellar basal body component protein		Description: Structure of FlgT, a flagellar basal body component protein

OCA: Protected "3w1e" [edit=sysop:move=sysop]

2012-11-21T08:52:45Z

Protected "3w1e" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:52, 21 November 2012

OCA: New page: '''Unreleased structure''' The entry 3w1e is ON HOLD Authors: Terashima, H., Sakuma, M., Homma, M., Imada, K. Description: Structure of FlgT, a flagellar basal body component protein

2012-11-21T08:52:44Z

New page: '''Unreleased structure''' The entry 3w1e is ON HOLD Authors: Terashima, H., Sakuma, M., Homma, M., Imada, K. Description: Structure of FlgT, a flagellar basal body component protein

New page

'''Unreleased structure'''

The entry 3w1e is ON HOLD

Authors: Terashima, H., Sakuma, M., Homma, M., Imada, K.

Description: Structure of FlgT, a flagellar basal body component protein