3w5i - Revision history

OCA at 12:50, 8 November 2023

2023-11-08T12:50:45Z

←Older revision		Revision as of 12:50, 8 November 2023
Line 3:		Line 3:
	<StructureSection load='3w5i' size='340' side='right'caption='[[3w5i]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='3w5i' size='340' side='right'caption='[[3w5i]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3w5i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Galcs Galcs~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W5I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3w5i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallionella_capsiferriformans_ES-2 Gallionella capsiferriformans ES-2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W5I FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.15Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max-height: 3em;'~~>~~[[3w5j\|3w5j]]~~<~~/div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">Galf_2203 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=395494 GALCS])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5i OCA], [https://pdbe.org/3w5i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w5i RCSB], [https://www.ebi.ac.uk/pdbsum/3w5i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w5i ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5i OCA], [https://pdbe.org/3w5i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w5i RCSB], [https://www.ebi.ac.uk/pdbsum/3w5i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w5i ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/D9SIP4_GALCS D9SIP4_GALCS]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Galcs~~]]	+	[[Category: Gallionella capsiferriformans ES-2]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Deshpande~~, C N~~]]	+	[[Category: Deshpande CN]]
-	[[Category: Jormakka, M]]	+	[[Category: Jormakka M]]
-	[[Category: McGrath~~, A P]]~~	+	[[Category: McGrath AP]]
-	~~[[Category: G protein]]~~	+
-	~~[[Category: Gtpase]]~~	+
-	~~[[Category: Iron transport]]~~	+
-	~~[[Category: Metal transport]]~~	+
-	~~[[Category: Transmembrane~~]]	+

OCA at 05:23, 3 August 2022

2022-08-03T05:23:06Z

←Older revision		Revision as of 05:23, 3 August 2022
Line 1:		Line 1:

	==Crystal structure of NfeoB from Gallionella capsiferriformans==		==Crystal structure of NfeoB from Gallionella capsiferriformans==
-	<StructureSection load='3w5i' size='340' side='right' caption='[[3w5i]], [[Resolution\|resolution]] 2.15Å' scene=''>	+	<StructureSection load='3w5i' size='340' side='right'caption='[[3w5i]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3w5i]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Galcs Galcs]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5I OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3W5I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3w5i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Galcs Galcs]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W5I FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3w5j\|3w5j]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3w5j\|3w5j]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Galf_2203 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=395494 GALCS])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Galf_2203 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=395494 GALCS])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3w5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5i OCA], [~~http~~://pdbe.org/3w5i PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3w5i RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3w5i PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3w5i ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5i OCA], [https://pdbe.org/3w5i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w5i RCSB], [https://www.ebi.ac.uk/pdbsum/3w5i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w5i ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Galcs]]		[[Category: Galcs]]
		+	[[Category: Large Structures]]
	[[Category: Deshpande, C N]]		[[Category: Deshpande, C N]]
	[[Category: Jormakka, M]]		[[Category: Jormakka, M]]

OCA at 17:06, 5 August 2016

2016-08-05T17:06:14Z

←Older revision		Revision as of 17:06, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of NfeoB from Gallionella capsiferriformans==		==Crystal structure of NfeoB from Gallionella capsiferriformans==
	<StructureSection load='3w5i' size='340' side='right' caption='[[3w5i]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='3w5i' size='340' side='right' caption='[[3w5i]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3w5i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Gallionella_capsiferriformans_es-2 Gallionella capsiferriformans es-2~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3W5I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3w5i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Galcs Galcs]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3W5I FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3w5j\|3w5j]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3w5j\|3w5j]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Galf_2203 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=395494 ~~Gallionella capsiferriformans ES-2~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Galf_2203 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=395494 GALCS])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3w5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3w5i RCSB], [http://www.ebi.ac.uk/pdbsum/3w5i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3w5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5i OCA], [http://pdbe.org/3w5i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3w5i RCSB], [http://www.ebi.ac.uk/pdbsum/3w5i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3w5i ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3w5i" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Gallionella capsiferriformans es-2~~]]	+	[[Category: Galcs]]
	[[Category: Deshpande, C N]]		[[Category: Deshpande, C N]]
	[[Category: Jormakka, M]]		[[Category: Jormakka, M]]

OCA at 06:43, 21 December 2014

2014-12-21T06:43:14Z

←Older revision		Revision as of 06:43, 21 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3w5i\| PDB~~=3w5i \| ~~SCENE~~= }}	+	==Crystal structure of NfeoB from Gallionella capsiferriformans==
-	===~~Crystal~~ structure ~~of NfeoB~~ from Gallionella capsiferriformans===	+	<StructureSection load='3w5i' size='340' side='right' caption='[[3w5i]], [[Resolution\|resolution]] 2.15Å' scene=''>
-	~~{{ABSTRACT_PUBMED_23545645}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3w5i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallionella_capsiferriformans_es-2 Gallionella capsiferriformans es-2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3W5I FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3w5j\|3w5j]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Galf_2203 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=395494 Gallionella capsiferriformans ES-2])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3w5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3w5i RCSB], [http://www.ebi.ac.uk/pdbsum/3w5i PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	FeoB is a transmembrane protein involved in ferrous iron uptake in prokaryotic organisms. FeoB comprises a cytoplasmic soluble domain termed NFeoB and a C-terminal polytopic transmembrane domain. Recent structures of NFeoB have revealed two structural subdomains: a canonical GTPase domain and a five-helix helical domain. The GTPase domain hydrolyses GTP to GDP through a well characterized mechanism, a process which is required for Fe(2+) transport. In contrast, the precise role of the helical domain has not yet been fully determined. Here, the structure of the cytoplasmic domain of FeoB from Gallionella capsiferriformans is reported. Unlike recent structures of NFeoB, the G. capsiferriformans NFeoB structure is highly unusual in that it does not contain a helical domain. The crystal structures of both apo and GDP-bound protein forms a domain-swapped dimer.

-	~~==About this~~ Structure==	+	Structure of an atypical FeoB G-domain reveals a putative domain-swapped dimer.,Deshpande CN, McGrath AP, Font J, Guilfoyle AP, Maher MJ, Jormakka M Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Apr 1;69(Pt 4):399-404., doi: 10.1107/S1744309113005939. Epub 2013 Mar 29. PMID:23545645<ref>PMID:23545645</ref>
-	~~[[3w5i]] is~~ a ~~2 chain structure with sequence from [http~~:~~//en~~.~~wikipedia~~.~~org/wiki~~/~~Gallionella_capsiferriformans_es-2 Gallionella capsiferriformans es-2]~~. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id~~=~~3W5I OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Gallionella capsiferriformans es-2]]		[[Category: Gallionella capsiferriformans es-2]]
-	[[Category: Deshpande, C N.]]	+	[[Category: Deshpande, C N]]
-	[[Category: Jormakka, M.]]	+	[[Category: Jormakka, M]]
-	[[Category: McGrath, A P.]]	+	[[Category: McGrath, A P]]
	[[Category: G protein]]		[[Category: G protein]]
	[[Category: Gtpase]]		[[Category: Gtpase]]

OCA at 11:21, 24 April 2013

2013-04-24T11:21:57Z

←Older revision		Revision as of 11:21, 24 April 2013
Line 1:		Line 1:
-	~~'''Unreleased~~ structure~~'''~~	+	{{STRUCTURE_3w5i\| PDB=3w5i \| SCENE= }}
		+	===Crystal structure of NfeoB from Gallionella capsiferriformans===
		+	{{ABSTRACT_PUBMED_23545645}}

-	~~The entry~~ 3w5i is ~~ON HOLD until Paper Publication~~	+	==About this Structure==
-		+	[[3w5i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallionella_capsiferriformans_es-2 Gallionella capsiferriformans es-2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5I OCA].
-	~~Authors~~: Deshpande, C.N., McGrath, A.P.~~, Jormakka, M.~~	+	[[Category: Gallionella capsiferriformans es-2]]
-		+	[[Category: Deshpande, C N.]]
-	~~Description~~: ~~Crystal structure of NfeoB from Gallionella capsiferriformans~~	+	[[Category: Jormakka, M.]]
		+	[[Category: McGrath, A P.]]
		+	[[Category: G protein]]
		+	[[Category: Gtpase]]
		+	[[Category: Iron transport]]
		+	[[Category: Metal transport]]
		+	[[Category: Transmembrane]]

OCA at 13:10, 20 February 2013

2013-02-20T13:10:33Z

←Older revision		Revision as of 13:10, 20 February 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3w5i is ON HOLD	+	The entry 3w5i is ON HOLD until Paper Publication

	Authors: Deshpande, C.N., McGrath, A.P., Jormakka, M.		Authors: Deshpande, C.N., McGrath, A.P., Jormakka, M.

	Description: Crystal structure of NfeoB from Gallionella capsiferriformans		Description: Crystal structure of NfeoB from Gallionella capsiferriformans

OCA: Protected "3w5i" [edit=sysop:move=sysop]

2013-02-06T12:14:08Z

Protected "3w5i" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:14, 6 February 2013

OCA: New page: '''Unreleased structure''' The entry 3w5i is ON HOLD Authors: Deshpande, C.N., McGrath, A.P., Jormakka, M. Description: Crystal structure of NfeoB from Gallionella capsiferriformans

2013-02-06T12:14:07Z

New page: '''Unreleased structure''' The entry 3w5i is ON HOLD Authors: Deshpande, C.N., McGrath, A.P., Jormakka, M. Description: Crystal structure of NfeoB from Gallionella capsiferriformans

New page

'''Unreleased structure'''

The entry 3w5i is ON HOLD

Authors: Deshpande, C.N., McGrath, A.P., Jormakka, M.

Description: Crystal structure of NfeoB from Gallionella capsiferriformans