3w5w - Revision history

OCA at 12:51, 8 November 2023

2023-11-08T12:51:07Z

←Older revision		Revision as of 12:51, 8 November 2023
Line 1:		Line 1:

	==Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis==		==Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis==
-	<StructureSection load='3w5w' size='340' side='right'caption='[[3w5w]]' scene=''>	+	<StructureSection load='3w5w' size='340' side='right'caption='[[3w5w]], [[Resolution\|resolution]] 2.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W5W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3w5w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_fragilis_YCH46 Bacteroides fragilis YCH46]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W5W FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5w OCA], [https://pdbe.org/3w5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w5w RCSB], [https://www.ebi.ac.uk/pdbsum/3w5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w5w ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.95Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5w OCA], [https://pdbe.org/3w5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w5w RCSB], [https://www.ebi.ac.uk/pdbsum/3w5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w5w ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q64PD9_BACFR Q64PD9_BACFR]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	NanoRNase (Nrn) specifically degrades nucleoside 3',5'-bisphosphate and the very short RNA, nanoRNA, during the final step of mRNA degradation. The crystal structure of Nrn in complex with a reaction product GMP was determined. The overall structure consists of two domains that are interconnected by a flexible loop and form a cleft. Two Mn(2)(+) ions are coordinated by conserved residues in the DHH motif of the N-terminal domain. GMP binds near the DHHA1 motif region in the C-terminal domain. Our structure enables us to predict the substrate-bound form of Nrn as well as other DHH/DHHA1 phosphoesterase family proteins.
		+
		+	Crystal structure of the ligand-binding form of nanoRNase from Bacteroides fragilis, a member of the DHH/DHHA1 phosphoesterase family of proteins.,Uemura Y, Nakagawa N, Wakamatsu T, Kim K, Montelione GT, Hunt JF, Kuramitsu S, Masui R FEBS Lett. 2013 Aug 19;587(16):2669-74. doi: 10.1016/j.febslet.2013.06.053. Epub , 2013 Jul 9. PMID:23851074<ref>PMID:23851074</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 3w5w" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacteroides fragilis YCH46]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Hunt JF]]		[[Category: Hunt JF]]

OCA at 10:28, 31 August 2022

2022-08-31T10:28:21Z

←Older revision		Revision as of 10:28, 31 August 2022
Line 1:		Line 1:

	==Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis==		==Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis==
-	<StructureSection load='3w5w' size='340' side='right'caption='[[3w5w]]~~, [[Resolution\|resolution]] 2.95Å~~' scene=''>	+	<StructureSection load='3w5w' size='340' side='right'caption='[[3w5w]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[3w5w]] is a 1 chain structure.~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W5W FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W5W FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5w OCA], [https://pdbe.org/3w5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w5w RCSB], [https://www.ebi.ac.uk/pdbsum/3w5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w5w ProSAT]</span></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3dma\|3dma]]</div></td></tr>~~	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5w OCA], [https://pdbe.org/3w5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w5w RCSB], [https://www.ebi.ac.uk/pdbsum/3w5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w5w ProSAT]</span></td></tr>	+
	</table>		</table>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	NanoRNase (Nrn) specifically degrades nucleoside 3',5'-bisphosphate and the very short RNA, nanoRNA, during the final step of mRNA degradation. The crystal structure of Nrn in complex with a reaction product GMP was determined. The overall structure consists of two domains that are interconnected by a flexible loop and form a cleft. Two Mn(2)(+) ions are coordinated by conserved residues in the DHH motif of the N-terminal domain. GMP binds near the DHHA1 motif region in the C-terminal domain. Our structure enables us to predict the substrate-bound form of Nrn as well as other DHH/DHHA1 phosphoesterase family proteins.
-
-	Crystal structure of the ligand-binding form of nanoRNase from Bacteroides fragilis, a member of the DHH/DHHA1 phosphoesterase family of proteins.,Uemura Y, Nakagawa N, Wakamatsu T, Kim K, Montelione GT, Hunt JF, Kuramitsu S, Masui R FEBS Lett. 2013 Aug 19;587(16):2669-74. doi: 10.1016/j.febslet.2013.06.053. Epub , 2013 Jul 9. PMID:23851074<ref>PMID:23851074</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 3w5w" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Hunt~~, J F~~]]	+	[[Category: Hunt JF]]
-	[[Category: Kuramitsu, S]]	+	[[Category: Kuramitsu S]]
-	[[Category: Masui, R]]	+	[[Category: Masui R]]
-	[[Category: Montelione~~, G T~~]]	+	[[Category: Montelione GT]]
-	[[Category: Nakagawa, N]]	+	[[Category: Nakagawa N]]
-	[[Category: Uemura, Y]]	+	[[Category: Uemura Y]]
-	[[Category: Wakamatsu, T]]	+	[[Category: Wakamatsu T]]
-	~~[[Category: Dhh phosphatase]]~~	+
-	~~[[Category: Dhha1 motif]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Phosphatase~~]]	+

OCA at 04:56, 25 August 2022

2022-08-25T04:56:42Z

←Older revision		Revision as of 04:56, 25 August 2022
Line 3:		Line 3:
	<StructureSection load='3w5w' size='340' side='right'caption='[[3w5w]], [[Resolution\|resolution]] 2.95Å' scene=''>		<StructureSection load='3w5w' size='340' side='right'caption='[[3w5w]], [[Resolution\|resolution]] 2.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3w5w]] is a 1 chain structure ~~with sequence from [https://en.wikipedia.org/wiki/Bacfr Bacfr]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W5W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3w5w]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W5W FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3dma\|3dma]]</div></td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3dma\|3dma]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BF3900 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=295405 BACFR])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5w OCA], [https://pdbe.org/3w5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w5w RCSB], [https://www.ebi.ac.uk/pdbsum/3w5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w5w ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5w OCA], [https://pdbe.org/3w5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w5w RCSB], [https://www.ebi.ac.uk/pdbsum/3w5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w5w ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	NanoRNase (Nrn) specifically degrades nucleoside 3',5'-bisphosphate and the very short RNA, nanoRNA, during the final step of mRNA degradation. The crystal structure of Nrn in complex with a reaction product GMP was determined. The overall structure consists of two domains that are interconnected by a flexible loop and form a cleft. Two Mn(2)(+) ions are coordinated by conserved residues in the DHH motif of the N-terminal domain. GMP binds near the DHHA1 motif region in the C-terminal domain. Our structure enables us to predict the substrate-bound form of Nrn as well as other DHH/DHHA1 phosphoesterase family proteins.
		+
		+	Crystal structure of the ligand-binding form of nanoRNase from Bacteroides fragilis, a member of the DHH/DHHA1 phosphoesterase family of proteins.,Uemura Y, Nakagawa N, Wakamatsu T, Kim K, Montelione GT, Hunt JF, Kuramitsu S, Masui R FEBS Lett. 2013 Aug 19;587(16):2669-74. doi: 10.1016/j.febslet.2013.06.053. Epub , 2013 Jul 9. PMID:23851074<ref>PMID:23851074</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 3w5w" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacfr]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Hunt, J F]]		[[Category: Hunt, J F]]

OCA at 05:23, 3 August 2022

2022-08-03T05:23:40Z

←Older revision		Revision as of 05:23, 3 August 2022
Line 1:		Line 1:

	==Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis==		==Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis==
-	<StructureSection load='3w5w' size='340' side='right' caption='[[3w5w]], [[Resolution\|resolution]] 2.95Å' scene=''>	+	<StructureSection load='3w5w' size='340' side='right'caption='[[3w5w]], [[Resolution\|resolution]] 2.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3w5w]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bacfr Bacfr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5W OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3W5W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3w5w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacfr Bacfr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W5W FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3dma\|3dma]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3dma\|3dma]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BF3900 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=295405 BACFR])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BF3900 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=295405 BACFR])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3w5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5w OCA], [~~http~~://pdbe.org/3w5w PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3w5w RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3w5w PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3w5w ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5w OCA], [https://pdbe.org/3w5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w5w RCSB], [https://www.ebi.ac.uk/pdbsum/3w5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w5w ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Bacfr]]		[[Category: Bacfr]]
		+	[[Category: Large Structures]]
	[[Category: Hunt, J F]]		[[Category: Hunt, J F]]
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu, S]]

OCA at 16:25, 5 August 2016

2016-08-05T16:25:58Z

←Older revision		Revision as of 16:25, 5 August 2016
Line 1:		Line 1:
		+
	==Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis==		==Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis==
	<StructureSection load='3w5w' size='340' side='right' caption='[[3w5w]], [[Resolution\|resolution]] 2.95Å' scene=''>		<StructureSection load='3w5w' size='340' side='right' caption='[[3w5w]], [[Resolution\|resolution]] 2.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3w5w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacteroides_fragilis_ych46 Bacteroides fragilis ych46~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3W5W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3w5w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacfr Bacfr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3W5W FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3dma\|3dma]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3dma\|3dma]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BF3900 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=295405 ~~Bacteroides fragilis YCH46~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BF3900 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=295405 BACFR])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3w5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3w5w RCSB], [http://www.ebi.ac.uk/pdbsum/3w5w PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3w5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5w OCA], [http://pdbe.org/3w5w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3w5w RCSB], [http://www.ebi.ac.uk/pdbsum/3w5w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3w5w ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacteroides fragilis ych46~~]]	+	[[Category: Bacfr]]
	[[Category: Hunt, J F]]		[[Category: Hunt, J F]]
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu, S]]

OCA at 07:13, 21 December 2014

2014-12-21T07:13:48Z

←Older revision		Revision as of 07:13, 21 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3w5w\| PDB=3w5w \| SCENE= }}~~	+	==Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis==
-	===Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis===	+	<StructureSection load='3w5w' size='340' side='right' caption='[[3w5w]], [[Resolution\|resolution]] 2.95Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[3w5w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_fragilis_ych46 Bacteroides fragilis ych46]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3W5W FirstGlance]. <br>
-	[[3w5w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_fragilis_ych46 Bacteroides fragilis ych46]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5W OCA].	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3dma\|3dma]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BF3900 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=295405 Bacteroides fragilis YCH46])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3w5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w5w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3w5w RCSB], [http://www.ebi.ac.uk/pdbsum/3w5w PDBsum]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
	[[Category: Bacteroides fragilis ych46]]		[[Category: Bacteroides fragilis ych46]]
-	[[Category: Hunt, J F.]]	+	[[Category: Hunt, J F]]
-	[[Category: Kuramitsu, S.]]	+	[[Category: Kuramitsu, S]]
-	[[Category: Masui, R.]]	+	[[Category: Masui, R]]
-	[[Category: Montelione, G T.]]	+	[[Category: Montelione, G T]]
-	[[Category: Nakagawa, N.]]	+	[[Category: Nakagawa, N]]
-	[[Category: Uemura, Y.]]	+	[[Category: Uemura, Y]]
-	[[Category: Wakamatsu, T.]]	+	[[Category: Wakamatsu, T]]
	[[Category: Dhh phosphatase]]		[[Category: Dhh phosphatase]]
	[[Category: Dhha1 motif]]		[[Category: Dhha1 motif]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Phosphatase]]		[[Category: Phosphatase]]

OCA at 15:47, 10 July 2013

2013-07-10T15:47:47Z

←Older revision		Revision as of 15:47, 10 July 2013
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{STRUCTURE_3w5w\| PDB=3w5w \| SCENE= }}
		+	===Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis===

-	~~The entry~~ 3w5w is ~~ON HOLD until Feb 07 2015~~	+	==About this Structure==
-		+	[[3w5w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_fragilis_ych46 Bacteroides fragilis ych46]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W5W OCA].
-	~~Authors~~: ~~Uemura~~, Y., ~~Nakagawa, N~~., ~~Wakamatsu, T~~., Montelione, G.T., ~~Hunt, J.F~~., ~~Masui, R~~., ~~Kuramitsu, S~~.	+	[[Category: Bacteroides fragilis ych46]]
-		+	[[Category: Hunt, J F.]]
-	~~Description~~: ~~Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis~~	+	[[Category: Kuramitsu, S.]]
		+	[[Category: Masui, R.]]
		+	[[Category: Montelione, G T.]]
		+	[[Category: Nakagawa, N.]]
		+	[[Category: Uemura, Y.]]
		+	[[Category: Wakamatsu, T.]]
		+	[[Category: Dhh phosphatase]]
		+	[[Category: Dhha1 motif]]
		+	[[Category: Hydrolase]]
		+	[[Category: Phosphatase]]

OCA at 14:04, 27 February 2013

2013-02-27T14:04:45Z

←Older revision		Revision as of 14:04, 27 February 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3w5w is ON HOLD	+	The entry 3w5w is ON HOLD until Feb 07 2015

	Authors: Uemura, Y., Nakagawa, N., Wakamatsu, T., Montelione, G.T., Hunt, J.F., Masui, R., Kuramitsu, S.		Authors: Uemura, Y., Nakagawa, N., Wakamatsu, T., Montelione, G.T., Hunt, J.F., Masui, R., Kuramitsu, S.

	Description: Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis		Description: Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis

OCA: Protected "3w5w" [edit=sysop:move=sysop]

2013-02-13T09:51:44Z

Protected "3w5w" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:51, 13 February 2013

OCA: New page: '''Unreleased structure''' The entry 3w5w is ON HOLD Authors: Uemura, Y., Nakagawa, N., Wakamatsu, T., Montelione, G.T., Hunt, J.F., Masui, R., Kuramitsu, S. Description: Mn2+-GMP comp...

2013-02-13T09:51:43Z

New page: '''Unreleased structure''' The entry 3w5w is ON HOLD Authors: Uemura, Y., Nakagawa, N., Wakamatsu, T., Montelione, G.T., Hunt, J.F., Masui, R., Kuramitsu, S. Description: Mn2+-GMP comp...

New page

'''Unreleased structure'''

The entry 3w5w is ON HOLD

Authors: Uemura, Y., Nakagawa, N., Wakamatsu, T., Montelione, G.T., Hunt, J.F., Masui, R., Kuramitsu, S.

Description: Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis