3zdc - Revision history

OCA at 07:12, 1 May 2024

2024-05-01T07:12:44Z

←Older revision		Revision as of 07:12, 1 May 2024
Line 3:		Line 3:
	<StructureSection load='3zdc' size='340' side='right'caption='[[3zdc]], [[Resolution\|resolution]] 1.53Å' scene=''>		<StructureSection load='3zdc' size='340' side='right'caption='[[3zdc]], [[Resolution\|resolution]] 1.53Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zdc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZDC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zdc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZDC FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.53Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3zd8\|3zd8]], [[3zd9\|3zd9]], [[3zda\|3zda]], [[3zdb\|3zdb]], [[3zdd\|3zdd]], [[3zde\|3zde]]</div></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zdc OCA], [https://pdbe.org/3zdc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zdc RCSB], [https://www.ebi.ac.uk/pdbsum/3zdc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zdc ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zdc OCA], [https://pdbe.org/3zdc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zdc RCSB], [https://www.ebi.ac.uk/pdbsum/3zdc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zdc ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/XNI_ECO57 XNI_ECO57]] May have a role in processing of nucleic acids. It is probably not an exonuclease; metal-binding residues found in paralogs are missing (By similarity).	+	[https://www.uniprot.org/uniprot/XNI_ECO57 XNI_ECO57] May have a role in processing of nucleic acids. It is probably not an exonuclease; metal-binding residues found in paralogs are missing (By similarity).
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	Escherichia coli Exonuclease IX (ExoIX), encoded by the xni gene, was the first identified member of a novel subfamily of ubiquitous flap endonucleases (FENs), which possess only one of the two catalytic metal-binding sites characteristic of other FENs. We have solved the first structure of one of these enzymes, that of ExoIX itself, at high resolution in DNA-bound and DNA-free forms. In the enzyme-DNA cocrystal, the single catalytic site binds two magnesium ions. The structures also reveal a binding site in the C-terminal domain where a potassium ion is directly coordinated by five main chain carbonyl groups, and we show this site is essential for DNA binding. This site resembles structurally and functionally the potassium sites in the human FEN1 and exonuclease 1 enzymes. Fluorescence anisotropy measurements and the crystal structures of the ExoIX:DNA complexes show that this potassium ion interacts directly with a phosphate diester in the substrate DNA.	+
-		+
-	The structure of Escherichia coli ExoIX--implications for DNA binding and catalysis in flap endonucleases.,Anstey-Gilbert CS, Hemsworth GR, Flemming CS, Hodskinson MR, Zhang J, Sedelnikova SE, Stillman TJ, Sayers JR, Artymiuk PJ Nucleic Acids Res. 2013 Jul 2. PMID:23821668<ref>PMID:23821668</ref>	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class="pdbe-citations 3zdc" style="background-color:#fffaf0;"></div>~~	+
-	~~== References ==~~	+
-	~~<references/>~~	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895~~]]	+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Anstey-Gilbert~~, C S~~]]	+	[[Category: Synthetic construct]]
-	[[Category: Artymiuk~~, P J~~]]	+	[[Category: Anstey-Gilbert CS]]
-	[[Category: Flemming~~, C S~~]]	+	[[Category: Artymiuk PJ]]
-	[[Category: Hemsworth~~, G R~~]]	+	[[Category: Flemming CS]]
-	[[Category: Hodskinson~~, M R.G~~]]	+	[[Category: Hemsworth GR]]
-	[[Category: Sayers~~, J R~~]]	+	[[Category: Hodskinson MRG]]
-	[[Category: Sedelnikova~~, S E~~]]	+	[[Category: Sayers JR]]
-	[[Category: Stillman~~, T J~~]]	+	[[Category: Sedelnikova SE]]
-	[[Category: Zhang, J]]	+	[[Category: Stillman TJ]]
-	~~[[Category: Dna binding]]~~	+	[[Category: Zhang J]]
-	~~[[Category: Exoix]]~~	+
-	~~[[Category: Flap endonuclease]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 05:42, 10 August 2022

2022-08-10T05:42:45Z

←Older revision		Revision as of 05:42, 10 August 2022
Line 1:		Line 1:

	==Structure of E. coli ExoIX in complex with the palindromic 5ov4 DNA oligonucleotide, potassium and calcium==		==Structure of E. coli ExoIX in complex with the palindromic 5ov4 DNA oligonucleotide, potassium and calcium==
-	<StructureSection load='3zdc' size='340' side='right' caption='[[3zdc]], [[Resolution\|resolution]] 1.53Å' scene=''>	+	<StructureSection load='3zdc' size='340' side='right'caption='[[3zdc]], [[Resolution\|resolution]] 1.53Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zdc]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZDC OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ZDC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zdc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZDC FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zd8\|3zd8]], [[3zd9\|3zd9]], [[3zda\|3zda]], [[3zdb\|3zdb]], [[3zdd\|3zdd]], [[3zde\|3zde]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3zd8\|3zd8]], [[3zd9\|3zd9]], [[3zda\|3zda]], [[3zdb\|3zdb]], [[3zdd\|3zdd]], [[3zde\|3zde]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3zdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zdc OCA], [~~http~~://pdbe.org/3zdc PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3zdc RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3zdc PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3zdc ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zdc OCA], [https://pdbe.org/3zdc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zdc RCSB], [https://www.ebi.ac.uk/pdbsum/3zdc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zdc ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/XNI_ECO57 XNI_ECO57]] May have a role in processing of nucleic acids. It is probably not an exonuclease; metal-binding residues found in paralogs are missing (By similarity).	+	[[https://www.uniprot.org/uniprot/XNI_ECO57 XNI_ECO57]] May have a role in processing of nucleic acids. It is probably not an exonuclease; metal-binding residues found in paralogs are missing (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
		+	[[Category: Large Structures]]
	[[Category: Anstey-Gilbert, C S]]		[[Category: Anstey-Gilbert, C S]]
	[[Category: Artymiuk, P J]]		[[Category: Artymiuk, P J]]

OCA at 01:43, 5 August 2016

2016-08-05T01:43:09Z

←Older revision		Revision as of 01:43, 5 August 2016
Line 1:		Line 1:
		+
	==Structure of E. coli ExoIX in complex with the palindromic 5ov4 DNA oligonucleotide, potassium and calcium==		==Structure of E. coli ExoIX in complex with the palindromic 5ov4 DNA oligonucleotide, potassium and calcium==
	<StructureSection load='3zdc' size='340' side='right' caption='[[3zdc]], [[Resolution\|resolution]] 1.53Å' scene=''>		<StructureSection load='3zdc' size='340' side='right' caption='[[3zdc]], [[Resolution\|resolution]] 1.53Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zdc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZDC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZDC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zdc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZDC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZDC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zd8\|3zd8]], [[3zd9\|3zd9]], [[3zda\|3zda]], [[3zdb\|3zdb]], [[3zdd\|3zdd]], [[3zde\|3zde]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zd8\|3zd8]], [[3zd9\|3zd9]], [[3zda\|3zda]], [[3zdb\|3zdb]], [[3zdd\|3zdd]], [[3zde\|3zde]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zdc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zdc RCSB], [http://www.ebi.ac.uk/pdbsum/3zdc PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zdc OCA], [http://pdbe.org/3zdc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3zdc RCSB], [http://www.ebi.ac.uk/pdbsum/3zdc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3zdc ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3zdc" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
	[[Category: Anstey-Gilbert, C S]]		[[Category: Anstey-Gilbert, C S]]
	[[Category: Artymiuk, P J]]		[[Category: Artymiuk, P J]]

OCA at 21:41, 24 December 2014

2014-12-24T21:41:58Z

←Older revision		Revision as of 21:41, 24 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zdc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zdc RCSB], [http://www.ebi.ac.uk/pdbsum/3zdc PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zdc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zdc RCSB], [http://www.ebi.ac.uk/pdbsum/3zdc PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/XNI_ECO57 XNI_ECO57]] May have a role in processing of nucleic acids. It is probably not an exonuclease; metal-binding residues found in paralogs are missing (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 09:18, 21 December 2014

2014-12-21T09:18:35Z

←Older revision		Revision as of 09:18, 21 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3zdc\| PDB=3zdc \| SCENE= }}~~	+	==Structure of E. coli ExoIX in complex with the palindromic 5ov4 DNA oligonucleotide, potassium and calcium==
-	===Structure of E. coli ExoIX in complex with the palindromic 5ov4 DNA oligonucleotide, potassium and calcium===	+	<StructureSection load='3zdc' size='340' side='right' caption='[[3zdc]], [[Resolution\|resolution]] 1.53Å' scene=''>
-	~~{{ABSTRACT_PUBMED_23821668}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3zdc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZDC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZDC FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zd8\|3zd8]], [[3zd9\|3zd9]], [[3zda\|3zda]], [[3zdb\|3zdb]], [[3zdd\|3zdd]], [[3zde\|3zde]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zdc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zdc RCSB], [http://www.ebi.ac.uk/pdbsum/3zdc PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Escherichia coli Exonuclease IX (ExoIX), encoded by the xni gene, was the first identified member of a novel subfamily of ubiquitous flap endonucleases (FENs), which possess only one of the two catalytic metal-binding sites characteristic of other FENs. We have solved the first structure of one of these enzymes, that of ExoIX itself, at high resolution in DNA-bound and DNA-free forms. In the enzyme-DNA cocrystal, the single catalytic site binds two magnesium ions. The structures also reveal a binding site in the C-terminal domain where a potassium ion is directly coordinated by five main chain carbonyl groups, and we show this site is essential for DNA binding. This site resembles structurally and functionally the potassium sites in the human FEN1 and exonuclease 1 enzymes. Fluorescence anisotropy measurements and the crystal structures of the ExoIX:DNA complexes show that this potassium ion interacts directly with a phosphate diester in the substrate DNA.

-	~~==Function==~~	+	The structure of Escherichia coli ExoIX--implications for DNA binding and catalysis in flap endonucleases.,Anstey-Gilbert CS, Hemsworth GR, Flemming CS, Hodskinson MR, Zhang J, Sedelnikova SE, Stillman TJ, Sayers JR, Artymiuk PJ Nucleic Acids Res. 2013 Jul 2. PMID:23821668<ref>PMID:23821668</ref>
-	~~[[http://www.uniprot.org/uniprot/XNI_ECO57 XNI_ECO57]] May have a role in processing~~ of ~~nucleic acids. It is probably not an exonuclease; metal~~-binding ~~residues found~~ in ~~paralogs are missing (By similarity)~~.	+

-	~~==About this Structure==~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[3zdc]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Escherichia_coli Escherichia coli]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3ZDC OCA].~~	+	</div>
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	~~<ref group="xtra">PMID:023821668</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Anstey-Gilbert, C S.]]	+	[[Category: Anstey-Gilbert, C S]]
-	[[Category: Artymiuk, P J.]]	+	[[Category: Artymiuk, P J]]
-	[[Category: Flemming, C S.]]	+	[[Category: Flemming, C S]]
-	[[Category: Hemsworth, G R.]]	+	[[Category: Hemsworth, G R]]
-	[[Category: Hodskinson, M R.G.]]	+	[[Category: Hodskinson, M R.G]]
-	[[Category: Sayers, J R.]]	+	[[Category: Sayers, J R]]
-	[[Category: Sedelnikova, S E.]]	+	[[Category: Sedelnikova, S E]]
-	[[Category: Stillman, T J.]]	+	[[Category: Stillman, T J]]
-	[[Category: Zhang, J.]]	+	[[Category: Zhang, J]]
	[[Category: Dna binding]]		[[Category: Dna binding]]
	[[Category: Exoix]]		[[Category: Exoix]]
	[[Category: Flap endonuclease]]		[[Category: Flap endonuclease]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 04:33, 18 July 2013

2013-07-18T04:33:49Z

←Older revision		Revision as of 04:33, 18 July 2013
Line 1:		Line 1:
	{{STRUCTURE_3zdc\| PDB=3zdc \| SCENE= }}		{{STRUCTURE_3zdc\| PDB=3zdc \| SCENE= }}
	===Structure of E. coli ExoIX in complex with the palindromic 5ov4 DNA oligonucleotide, potassium and calcium===		===Structure of E. coli ExoIX in complex with the palindromic 5ov4 DNA oligonucleotide, potassium and calcium===
		+	{{ABSTRACT_PUBMED_23821668}}

	==Function==		==Function==
Line 7:		Line 8:
	==About this Structure==		==About this Structure==
	[[3zdc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZDC OCA].		[[3zdc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZDC OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:023821668</ref><references group="xtra"/><references/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Anstey-Gilbert, C S.]]		[[Category: Anstey-Gilbert, C S.]]

OCA at 15:48, 10 July 2013

2013-07-10T15:48:34Z

←Older revision		Revision as of 15:48, 10 July 2013
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{STRUCTURE_3zdc\| PDB=3zdc \| SCENE= }}
		+	===Structure of E. coli ExoIX in complex with the palindromic 5ov4 DNA oligonucleotide, potassium and calcium===

-	~~The entry 3zdc~~ is ~~ON HOLD until Paper Publication~~	+	==Function==
		+	[[http://www.uniprot.org/uniprot/XNI_ECO57 XNI_ECO57]] May have a role in processing of nucleic acids. It is probably not an exonuclease; metal-binding residues found in paralogs are missing (By similarity).

-	~~Authors~~: ~~Hemsworth, G~~.R., Anstey-Gilbert, C.S., Flemming, C.S., Hodskinson, M.R.G.~~, Zhang~~, J., Sedelnikova, S.E., Stillman, T.J.~~, Sayers~~, J.~~R., Artymiuk, P.J.~~	+	==About this Structure==
-		+	[[3zdc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZDC OCA].
-	~~Description~~: ~~Structure of E. coli ExoIX in complex with the palindromic 5ov4 DNA oligonucleotide, potassium and calcium~~	+	[[Category: Escherichia coli]]
		+	[[Category: Anstey-Gilbert, C S.]]
		+	[[Category: Artymiuk, P J.]]
		+	[[Category: Flemming, C S.]]
		+	[[Category: Hemsworth, G R.]]
		+	[[Category: Hodskinson, M R.G.]]
		+	[[Category: Sayers, J R.]]
		+	[[Category: Sedelnikova, S E.]]
		+	[[Category: Stillman, T J.]]
		+	[[Category: Zhang, J.]]
		+	[[Category: Dna binding]]
		+	[[Category: Exoix]]
		+	[[Category: Flap endonuclease]]
		+	[[Category: Hydrolase]]

OCA at 20:34, 12 December 2012

2012-12-12T20:34:49Z

←Older revision		Revision as of 20:34, 12 December 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3zdc is ON HOLD	+	The entry 3zdc is ON HOLD until Paper Publication

	Authors: Hemsworth, G.R., Anstey-Gilbert, C.S., Flemming, C.S., Hodskinson, M.R.G., Zhang, J., Sedelnikova, S.E., Stillman, T.J., Sayers, J.R., Artymiuk, P.J.		Authors: Hemsworth, G.R., Anstey-Gilbert, C.S., Flemming, C.S., Hodskinson, M.R.G., Zhang, J., Sedelnikova, S.E., Stillman, T.J., Sayers, J.R., Artymiuk, P.J.

	Description: Structure of E. coli ExoIX in complex with the palindromic 5ov4 DNA oligonucleotide, potassium and calcium		Description: Structure of E. coli ExoIX in complex with the palindromic 5ov4 DNA oligonucleotide, potassium and calcium

OCA: Protected "3zdc" [edit=sysop:move=sysop]

2012-12-05T10:19:12Z

Protected "3zdc" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:19, 5 December 2012

OCA: New page: '''Unreleased structure''' The entry 3zdc is ON HOLD Authors: Hemsworth, G.R., Anstey-Gilbert, C.S., Flemming, C.S., Hodskinson, M.R.G., Zhang, J., Sedelnikova, S.E., Stillman, T.J., Sa...

2012-12-05T10:19:11Z

New page: '''Unreleased structure''' The entry 3zdc is ON HOLD Authors: Hemsworth, G.R., Anstey-Gilbert, C.S., Flemming, C.S., Hodskinson, M.R.G., Zhang, J., Sedelnikova, S.E., Stillman, T.J., Sa...

New page

'''Unreleased structure'''

The entry 3zdc is ON HOLD

Authors: Hemsworth, G.R., Anstey-Gilbert, C.S., Flemming, C.S., Hodskinson, M.R.G., Zhang, J., Sedelnikova, S.E., Stillman, T.J., Sayers, J.R., Artymiuk, P.J.

Description: Structure of E. coli ExoIX in complex with the palindromic 5ov4 DNA oligonucleotide, potassium and calcium