3zfs - Revision history

OCA at 10:39, 9 May 2024

2024-05-09T10:39:09Z

←Older revision		Revision as of 10:39, 9 May 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3zfs]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanothermobacter_marburgensis Methanothermobacter marburgensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZFS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZFS FirstGlance]. <br>		<table><tr><td colspan='2'>[[3zfs]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanothermobacter_marburgensis Methanothermobacter marburgensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZFS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZFS FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F42:COENZYME+F420'>F42</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FCO:CARBONMONOXIDE-(DICYANO)+IRON'>FCO</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 4Å</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Coenzyme_F420_hydrogenase Coenzyme F420 hydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.98.1 1.12.98.1] </span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F42:COENZYME+F420'>F42</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FCO:CARBONMONOXIDE-(DICYANO)+IRON'>FCO</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zfs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zfs OCA], [https://pdbe.org/3zfs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zfs RCSB], [https://www.ebi.ac.uk/pdbsum/3zfs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zfs ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zfs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zfs OCA], [https://pdbe.org/3zfs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zfs RCSB], [https://www.ebi.ac.uk/pdbsum/3zfs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zfs ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/D9PYF9_METTM D9PYF9_METTM]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</SX>		</SX>
-	[[Category: Coenzyme F420 hydrogenase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Methanothermobacter marburgensis]]		[[Category: Methanothermobacter marburgensis]]
-	[[Category: Mills~~, D J~~]]	+	[[Category: Mills DJ]]
-	[[Category: Shima, S]]	+	[[Category: Shima S]]
-	[[Category: Strauss, M]]	+	[[Category: Strauss M]]
-	[[Category: Vitt, S]]	+	[[Category: Vitt S]]
-	[[Category: Vonck, J]]	+	[[Category: Vonck J]]
-	~~[[Category: Methanogenesis]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 05:45, 10 August 2022

2022-08-10T05:45:18Z

←Older revision		Revision as of 05:45, 10 August 2022
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	<SX load='3zfs' size='340' side='right' viewer='molstar' caption='[[3zfs]], [[Resolution\|resolution]] 4.00Å' scene=''>		<SX load='3zfs' size='340' side='right' viewer='molstar' caption='[[3zfs]], [[Resolution\|resolution]] 4.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zfs]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Methanothermobacter_marburgensis Methanothermobacter marburgensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZFS OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3ZFS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zfs]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanothermobacter_marburgensis Methanothermobacter marburgensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZFS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZFS FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F42:COENZYME+F420'>F42</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FCO:CARBONMONOXIDE-(DICYANO)+IRON'>FCO</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F42:COENZYME+F420'>F42</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FCO:CARBONMONOXIDE-(DICYANO)+IRON'>FCO</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Coenzyme_F420_hydrogenase Coenzyme F420 hydrogenase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.98.1 1.12.98.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Coenzyme_F420_hydrogenase Coenzyme F420 hydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.98.1 1.12.98.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3zfs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zfs OCA], [~~http~~://pdbe.org/3zfs PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3zfs RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3zfs PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3zfs ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zfs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zfs OCA], [https://pdbe.org/3zfs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zfs RCSB], [https://www.ebi.ac.uk/pdbsum/3zfs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zfs ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 18:42, 10 April 2020

2020-04-10T18:42:05Z

←Older revision		Revision as of 18:42, 10 April 2020
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	<SX load='3zfs' size='340' side='right' viewer='molstar' caption='[[3zfs]], [[Resolution\|resolution]] 4.00Å' scene=''>		<SX load='3zfs' size='340' side='right' viewer='molstar' caption='[[3zfs]], [[Resolution\|resolution]] 4.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zfs]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_marburgensis Methanothermobacter marburgensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZFS OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ZFS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zfs]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_marburgensis Methanothermobacter marburgensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZFS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3ZFS FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=F42:COENZYME+F420'>F42</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FCO:CARBONMONOXIDE-(DICYANO)+IRON'>FCO</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F42:COENZYME+F420'>F42</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FCO:CARBONMONOXIDE-(DICYANO)+IRON'>FCO</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Coenzyme_F420_hydrogenase Coenzyme F420 hydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.98.1 1.12.98.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Coenzyme_F420_hydrogenase Coenzyme F420 hydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.98.1 1.12.98.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3zfs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zfs OCA], [http://pdbe.org/3zfs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3zfs RCSB], [http://www.ebi.ac.uk/pdbsum/3zfs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3zfs ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3zfs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zfs OCA], [http://pdbe.org/3zfs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3zfs RCSB], [http://www.ebi.ac.uk/pdbsum/3zfs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3zfs ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 17:44, 6 March 2020

2020-03-06T17:44:32Z

←Older revision		Revision as of 17:44, 6 March 2020
Line 1:		Line 1:

	==Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate==		==Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate==
-	<~~StructureSection~~ load='3zfs' size='340' side='right'caption='[[3zfs]], [[Resolution\|resolution]] 4.00Å' scene=''>	+	<SX load='3zfs' size='340' side='right' viewer='molstar' caption='[[3zfs]], [[Resolution\|resolution]] 4.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3zfs]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_marburgensis Methanothermobacter marburgensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZFS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZFS FirstGlance]. <br>		<table><tr><td colspan='2'>[[3zfs]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_marburgensis Methanothermobacter marburgensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZFS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZFS FirstGlance]. <br>
Line 20:		Line 20:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Coenzyme F420 hydrogenase]]		[[Category: Coenzyme F420 hydrogenase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 16:45, 28 August 2019

2019-08-28T16:45:30Z

←Older revision		Revision as of 16:45, 28 August 2019
Line 1:		Line 1:

	==Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate==		==Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate==
-	<StructureSection load='3zfs' size='340' side='right' caption='[[3zfs]], [[Resolution\|resolution]] 4.00Å' scene=''>	+	<StructureSection load='3zfs' size='340' side='right'caption='[[3zfs]], [[Resolution\|resolution]] 4.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3zfs]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_marburgensis Methanothermobacter marburgensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZFS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZFS FirstGlance]. <br>		<table><tr><td colspan='2'>[[3zfs]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_marburgensis Methanothermobacter marburgensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZFS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZFS FirstGlance]. <br>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Coenzyme F420 hydrogenase]]		[[Category: Coenzyme F420 hydrogenase]]
		+	[[Category: Large Structures]]
	[[Category: Methanothermobacter marburgensis]]		[[Category: Methanothermobacter marburgensis]]
	[[Category: Mills, D J]]		[[Category: Mills, D J]]

OCA at 19:15, 11 August 2016

2016-08-11T19:15:43Z

←Older revision		Revision as of 19:15, 11 August 2016
Line 1:		Line 1:
		+
	==Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate==		==Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate==
	<StructureSection load='3zfs' size='340' side='right' caption='[[3zfs]], [[Resolution\|resolution]] 4.00Å' scene=''>		<StructureSection load='3zfs' size='340' side='right' caption='[[3zfs]], [[Resolution\|resolution]] 4.00Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=F42:COENZYME+F420'>F42</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FCO:CARBONMONOXIDE-(DICYANO)+IRON'>FCO</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=F42:COENZYME+F420'>F42</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FCO:CARBONMONOXIDE-(DICYANO)+IRON'>FCO</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Coenzyme_F420_hydrogenase Coenzyme F420 hydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.98.1 1.12.98.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Coenzyme_F420_hydrogenase Coenzyme F420 hydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.98.1 1.12.98.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zfs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zfs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zfs RCSB], [http://www.ebi.ac.uk/pdbsum/3zfs PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zfs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zfs OCA], [http://pdbe.org/3zfs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3zfs RCSB], [http://www.ebi.ac.uk/pdbsum/3zfs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3zfs ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3zfs" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:52, 4 January 2015

2015-01-04T10:52:36Z

←Older revision		Revision as of 10:52, 4 January 2015
Line 1:		Line 1:
-	~~{{STRUCTURE_3zfs\| PDB=3zfs \| SCENE= }}~~	+	==Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate==
-	===Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate===	+	<StructureSection load='3zfs' size='340' side='right' caption='[[3zfs]], [[Resolution\|resolution]] 4.00Å' scene=''>
-	~~{{ABSTRACT_PUBMED_23483797}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3zfs]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_marburgensis Methanothermobacter marburgensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZFS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZFS FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=F42:COENZYME+F420'>F42</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FCO:CARBONMONOXIDE-(DICYANO)+IRON'>FCO</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Coenzyme_F420_hydrogenase Coenzyme F420 hydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.98.1 1.12.98.1] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zfs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zfs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zfs RCSB], [http://www.ebi.ac.uk/pdbsum/3zfs PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Methanogenic archaea use a [NiFe]-hydrogenase, Frh, for oxidation/reduction of F, an important hydride carrier in the methanogenesis pathway from H and CO. Frh accounts for about 1% of the cytoplasmic protein and forms a huge complex consisting of FrhABG heterotrimers with each a [NiFe] center, four Fe-S clusters and an FAD. Here, we report the structure determined by near-atomic resolution cryo-EM of Frh with and without bound substrate F. The polypeptide chains of FrhB, for which there was no homolog, was traced de novo from the EM map. The 1.2-MDa complex contains 12 copies of the heterotrimer, which unexpectedly form a spherical protein shell with a hollow core. The cryo-EM map reveals strong electron density of the chains of metal clusters running parallel to the protein shell, and the F-binding site is located at the end of the chain near the outside of the spherical structure. http://dx.doi.org/10.7554/eLife.00218.001.

-	~~==About this Structure==~~	+	De novo modeling of the F420-reducing [NiFe]-hydrogenase from a methanogenic archaeon by cryo-electron microscopy.,Mills DJ, Vitt S, Strauss M, Shima S, Vonck J Elife. 2013;2:e00218. doi: 10.7554/eLife.00218. Epub 2013 Mar 5. PMID:23483797<ref>PMID:23483797</ref>
-	[~~[3zfs]~~] ~~is a 3 chain structure with sequence~~ from ~~[http~~:~~//en~~.~~wikipedia~~.~~org~~/~~wiki/Methanothermobacter_marburgensis Methanothermobacter marburgensis]~~. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id~~=~~3ZFS OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Coenzyme F420 hydrogenase]]		[[Category: Coenzyme F420 hydrogenase]]
	[[Category: Methanothermobacter marburgensis]]		[[Category: Methanothermobacter marburgensis]]
-	[[Category: Mills, D J.]]	+	[[Category: Mills, D J]]
-	[[Category: Shima, S.]]	+	[[Category: Shima, S]]
-	[[Category: Strauss, M.]]	+	[[Category: Strauss, M]]
-	[[Category: Vitt, S.]]	+	[[Category: Vitt, S]]
-	[[Category: Vonck, J.]]	+	[[Category: Vonck, J]]
	[[Category: Methanogenesis]]		[[Category: Methanogenesis]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]

OCA at 00:22, 4 April 2013

2013-04-04T00:22:46Z

←Older revision		Revision as of 00:22, 4 April 2013
Line 1:		Line 1:
-	[[Image:3zfs.jpg\|left\|200px]]
-
	{{STRUCTURE_3zfs\| PDB=3zfs \| SCENE= }}		{{STRUCTURE_3zfs\| PDB=3zfs \| SCENE= }}
-
	===Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate===		===Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate===
-		+	{{ABSTRACT_PUBMED_23483797}}

	==About this Structure==		==About this Structure==

OCA at 14:20, 6 March 2013

2013-03-06T14:20:38Z

←Older revision		Revision as of 14:20, 6 March 2013
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3zfs.jpg\|left\|200px]]

-	~~The entry~~ 3zfs ~~is ON HOLD~~ ~~until Paper Publication~~	+	{{STRUCTURE_3zfs\| PDB=3zfs \| SCENE= }}

-	~~Authors: Mills, D.J., Vitt, S., Strauss, M., Shima, S., Vonck, J.~~	+	===Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate===

-	~~Description~~: ~~Cryo~~-~~EM structure of the~~ F420~~-reducing NiFe-~~hydrogenase ~~from a methanogenic archaeon with bound substrate~~	+
		+	==About this Structure==
		+	[[3zfs]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_marburgensis Methanothermobacter marburgensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZFS OCA].
		+	[[Category: Coenzyme F420 hydrogenase]]
		+	[[Category: Methanothermobacter marburgensis]]
		+	[[Category: Mills, D J.]]
		+	[[Category: Shima, S.]]
		+	[[Category: Strauss, M.]]
		+	[[Category: Vitt, S.]]
		+	[[Category: Vonck, J.]]
		+	[[Category: Methanogenesis]]
		+	[[Category: Oxidoreductase]]

OCA at 08:38, 2 January 2013

2013-01-02T08:38:46Z

←Older revision		Revision as of 08:38, 2 January 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3zfs is ON HOLD	+	The entry 3zfs is ON HOLD until Paper Publication

	Authors: Mills, D.J., Vitt, S., Strauss, M., Shima, S., Vonck, J.		Authors: Mills, D.J., Vitt, S., Strauss, M., Shima, S., Vonck, J.

	Description: Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate		Description: Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate