3zpf - Revision history

OCA at 07:07, 18 August 2022

2022-08-18T07:07:47Z

←Older revision		Revision as of 07:07, 18 August 2022
Line 3:		Line 3:
	<StructureSection load='3zpf' size='340' side='right'caption='[[3zpf]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3zpf' size='340' side='right'caption='[[3zpf]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zpf]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Avirulent_turkey_hemorrhagic_enteritis_virus Avirulent turkey hemorrhagic enteritis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZPF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ZPF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zpf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Avirulent_turkey_hemorrhagic_enteritis_virus Avirulent turkey hemorrhagic enteritis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZPF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZPF FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zpe\|3zpe]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3zpe\|3zpe]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3zpf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zpf OCA], [~~http~~://pdbe.org/3zpf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3zpf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3zpf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3zpf ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zpf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zpf OCA], [https://pdbe.org/3zpf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zpf RCSB], [https://www.ebi.ac.uk/pdbsum/3zpf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zpf ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 12:47, 1 January 2020

2020-01-01T12:47:57Z

←Older revision		Revision as of 12:47, 1 January 2020
Line 1:		Line 1:

	==Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre==		==Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre==
-	<StructureSection load='3zpf' size='340' side='right' caption='[[3zpf]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='3zpf' size='340' side='right'caption='[[3zpf]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3zpf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Avirulent_turkey_hemorrhagic_enteritis_virus Avirulent turkey hemorrhagic enteritis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZPF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZPF FirstGlance]. <br>		<table><tr><td colspan='2'>[[3zpf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Avirulent_turkey_hemorrhagic_enteritis_virus Avirulent turkey hemorrhagic enteritis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZPF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZPF FirstGlance]. <br>
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Avirulent turkey hemorrhagic enteritis virus]]		[[Category: Avirulent turkey hemorrhagic enteritis virus]]
		+	[[Category: Large Structures]]
	[[Category: Raaij, M J.van]]		[[Category: Raaij, M J.van]]
	[[Category: Singh, A K]]		[[Category: Singh, A K]]

OCA at 14:04, 15 November 2017

2017-11-15T14:04:44Z

←Older revision		Revision as of 14:04, 15 November 2017
Line 1:		Line 1:
		+
	==Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre==		==Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre==
	<StructureSection load='3zpf' size='340' side='right' caption='[[3zpf]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3zpf' size='340' side='right' caption='[[3zpf]], [[Resolution\|resolution]] 2.20Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zpe\|3zpe]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zpe\|3zpe]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zpf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zpf OCA], [http://pdbe.org/3zpf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3zpf RCSB], [http://www.ebi.ac.uk/pdbsum/3zpf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zpf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zpf OCA], [http://pdbe.org/3zpf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3zpf RCSB], [http://www.ebi.ac.uk/pdbsum/3zpf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3zpf ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 21:31, 15 October 2015

2015-10-15T21:31:43Z

←Older revision		Revision as of 21:31, 15 October 2015
Line 6:		Line 6:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zpe\|3zpe]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zpe\|3zpe]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zpf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zpf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zpf RCSB], [http://www.ebi.ac.uk/pdbsum/3zpf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zpf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zpf OCA], [http://pdbe.org/3zpf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3zpf RCSB], [http://www.ebi.ac.uk/pdbsum/3zpf PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The virulent form of turkey adenovirus 3 (TAdV-3), also known as turkey hemorrhagic enteritis virus (THEV), is an economically important poultry pathogen, while the avirulent form is used as a vaccine. TAdV-3 belongs to the genus Siadenovirus. The carboxy-terminal region of its fibre does not have significant sequence similarity to any other adenovirus fibre heads of known structure. Two amino acid sequence differences between virulent and avirulent TAdV-3 map on the fibre head: where virulent TAdV-3 contains Ile354 and Thr376, avirulent TAdV-3 contains Met354 and Met376. We determined the crystal structures of the trimeric virulent and avirulent TAdV-3 fibre head domains at 2.2 A resolution. Each monomer contains a beta-sandwich, which, surprisingly, resembles reovirus fibre head more than other adenovirus fibres, although the ABCJ-GHID topology is conserved in all. A beta-hairpin insertion in the C-strand of each trimer subunit embraces its neighbouring monomer. The avirulent and virulent TAdV-3 fibre heads are identical apart from the exact orientation of the beta-hairpin insertion. In vitro, sialyllactose was identified as a ligand by glycan microarray analysis, nuclear magnetic resonance spectroscopy, and crystallography. Its dissociation constant was measured to be in the mM range by isothermal titration calorimetry. The ligand binds to the side of the fibre head, involving amino acids Glu392, Thr419, Val420, Lys421, Asn422, and Gly423 binding to the sialic acid group. It binds slightly more strongly to the avirulent form. We propose that, in vivo, the TAdV-3 fibre may bind a sialic acid-containing cell surface component.
		+
		+	Structure and Sialyllactose Binding of the Carboxy-Terminal Head Domain of the Fibre from a Siadenovirus, Turkey Adenovirus 3.,Singh AK, Berbis MA, Ballmann MZ, Kilcoyne M, Menendez M, Nguyen TH, Joshi L, Canada FJ, Jimenez-Barbero J, Benko M, Harrach B, van Raaij MJ PLoS One. 2015 Sep 29;10(9):e0139339. doi: 10.1371/journal.pone.0139339., eCollection 2015. PMID:26418008<ref>PMID:26418008</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 3zpf" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 09:18, 4 January 2015

2015-01-04T09:18:11Z

←Older revision		Revision as of 09:18, 4 January 2015
Line 1:		Line 1:
-	~~{{STRUCTURE_3zpf\| PDB=3zpf \| SCENE= }}~~	+	==Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre==
-	===Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre===	+	<StructureSection load='3zpf' size='340' side='right' caption='[[3zpf]], [[Resolution\|resolution]] 2.20Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[3zpf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Avirulent_turkey_hemorrhagic_enteritis_virus Avirulent turkey hemorrhagic enteritis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZPF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZPF FirstGlance]. <br>
-	[[3zpf]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZPF OCA].	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	[[Category: Raaij, M J.van.]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	[[Category: Singh, A K.]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zpe\|3zpe]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zpf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zpf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zpf RCSB], [http://www.ebi.ac.uk/pdbsum/3zpf PDBsum]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Avirulent turkey hemorrhagic enteritis virus]]
		+	[[Category: Raaij, M J.van]]
		+	[[Category: Singh, A K]]
	[[Category: Beta-sandwich]]		[[Category: Beta-sandwich]]
	[[Category: Turkey hemorrhagic enteritis virus]]		[[Category: Turkey hemorrhagic enteritis virus]]
	[[Category: Viral protein]]		[[Category: Viral protein]]

OCA at 13:55, 12 March 2014

2014-03-12T13:55:10Z

←Older revision		Revision as of 13:55, 12 March 2014
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{STRUCTURE_3zpf\| PDB=3zpf \| SCENE= }}
		+	===Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre===

-	~~The entry~~ 3zpf is ~~ON HOLD until Paper Publication~~	+	==About this Structure==
-		+	[[3zpf]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZPF OCA].
-	~~Authors~~: ~~Singh, A~~.K.~~, van~~ Raaij, M.J.	+	[[Category: Raaij, M J.van.]]
-		+	[[Category: Singh, A K.]]
-	~~Description~~: ~~Structure of the carboxy~~-~~terminal domain of the turkey type 3 siadenovirus fibre~~	+	[[Category: Beta-sandwich]]
		+	[[Category: Turkey hemorrhagic enteritis virus]]
		+	[[Category: Viral protein]]

OCA at 09:41, 13 March 2013

2013-03-13T09:41:37Z

←Older revision		Revision as of 09:41, 13 March 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3zpf is ON HOLD	+	The entry 3zpf is ON HOLD until Paper Publication

	Authors: Singh, A.K., van Raaij, M.J.		Authors: Singh, A.K., van Raaij, M.J.

	Description: Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre		Description: Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre

OCA: Protected "3zpf" [edit=sysop:move=sysop]

2013-03-06T13:36:20Z

Protected "3zpf" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:36, 6 March 2013

OCA: New page: '''Unreleased structure''' The entry 3zpf is ON HOLD Authors: Singh, A.K., van Raaij, M.J. Description: Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre

2013-03-06T13:36:19Z

New page: '''Unreleased structure''' The entry 3zpf is ON HOLD Authors: Singh, A.K., van Raaij, M.J. Description: Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre

New page

'''Unreleased structure'''

The entry 3zpf is ON HOLD

Authors: Singh, A.K., van Raaij, M.J.

Description: Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre