434d - Revision history

OCA at 10:39, 1 March 2024

2024-03-01T10:39:34Z

←Older revision		Revision as of 10:39, 1 March 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[434d]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=434D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=434D FirstGlance]. <br>		<table><tr><td colspan='2'>[[434d]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=434D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=434D FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.16Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=434d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=434d OCA], [https://pdbe.org/434d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=434d RCSB], [https://www.ebi.ac.uk/pdbsum/434d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=434d ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=434d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=434d OCA], [https://pdbe.org/434d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=434d RCSB], [https://www.ebi.ac.uk/pdbsum/434d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=434d ProSAT]</span></td></tr>
	</table>		</table>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The acceptor stem of Escherichia coli tRNA(Ala), rGGGGCUA.rUAGCUCC (ALAwt), contains the main identity element for the correct aminoacylation by the alanyl tRNA synthetase. The presence of a G3.U70 wobble base pair is essential for the specificity of this reaction, but there is a debate whether direct minor-groove contact with the 2-amino group of G3 or a distortion of the acceptor stem induced by the wobble pair is the critical feature recognized by the synthetase. We here report the structure analysis of ALAwt at near-atomic resolution using twinned crystals. The crystal lattice is stabilized by a novel strontium binding motif between two cis-diolic O3'-terminal riboses. The two independent molecules in the asymmetric unit of the crystal show overall A-RNA geometry. A comparison with the crystal structure of the G3-C70 mutant of the acceptor stem (ALA(C70)) determined at 1.4 A exhibits a modulation in ALAwt of helical twist and slide due to the wobble base pair, but no recognizable distortion of the helix fragment distant from the wobble base pair. We suggest that a highly conserved hydration pattern in both grooves around the G3.U70 wobble base pair may be functionally significant.
-
-	Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution.,Mueller U, Schubel H, Sprinzl M, Heinemann U RNA. 1999 May;5(5):670-7. PMID:10334337<ref>PMID:10334337</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 434d" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Heinemann, U]]	+	[[Category: Heinemann U]]
-	[[Category: Mueller, U]]	+	[[Category: Mueller U]]
-	[[Category: Schuebel, H]]	+	[[Category: Schuebel H]]
-	[[Category: Sprinzl, M]]	+	[[Category: Sprinzl M]]
-	~~[[Category: Base-pair trna ala acceptor stem]]~~	+
-	~~[[Category: Double helix]]~~	+
-	~~[[Category: Rna~~]]	+

OCA at 07:33, 18 August 2022

2022-08-18T07:33:08Z

←Older revision		Revision as of 07:33, 18 August 2022
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	==5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3'==		==5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3'==
-	<StructureSection load='434d' size='340' side='right' caption='[[434d]], [[Resolution\|resolution]] 1.16Å' scene=''>	+	<StructureSection load='434d' size='340' side='right'caption='[[434d]], [[Resolution\|resolution]] 1.16Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[434d]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=434D OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=434D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[434d]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=434D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=434D FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=434d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=434d OCA], [~~http~~://pdbe.org/434d PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=434d RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/434d PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=434d ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=434d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=434d OCA], [https://pdbe.org/434d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=434d RCSB], [https://www.ebi.ac.uk/pdbsum/434d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=434d ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Heinemann, U]]		[[Category: Heinemann, U]]
	[[Category: Mueller, U]]		[[Category: Mueller, U]]

OCA at 16:40, 5 August 2016

2016-08-05T16:40:03Z

←Older revision		Revision as of 16:40, 5 August 2016
Line 1:		Line 1:
		+
	==5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3'==		==5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3'==
	<StructureSection load='434d' size='340' side='right' caption='[[434d]], [[Resolution\|resolution]] 1.16Å' scene=''>		<StructureSection load='434d' size='340' side='right' caption='[[434d]], [[Resolution\|resolution]] 1.16Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[434d]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=434D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=434D FirstGlance]. <br>		<table><tr><td colspan='2'>[[434d]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=434D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=434D FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=434d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=434d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=434d RCSB], [http://www.ebi.ac.uk/pdbsum/434d PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=434d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=434d OCA], [http://pdbe.org/434d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=434d RCSB], [http://www.ebi.ac.uk/pdbsum/434d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=434d ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 14:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 434d" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:00, 21 December 2014

2014-12-21T10:00:15Z

←Older revision		Revision as of 10:00, 21 December 2014
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-	~~{{STRUCTURE_434d\| PDB=434d \| SCENE= }}~~	+	==5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3'==
-	===5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3'===	+	<StructureSection load='434d' size='340' side='right' caption='[[434d]], [[Resolution\|resolution]] 1.16Å' scene=''>
-	~~{{ABSTRACT_PUBMED_10334337}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[434d]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=434D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=434D FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=434d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=434d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=434d RCSB], [http://www.ebi.ac.uk/pdbsum/434d PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The acceptor stem of Escherichia coli tRNA(Ala), rGGGGCUA.rUAGCUCC (ALAwt), contains the main identity element for the correct aminoacylation by the alanyl tRNA synthetase. The presence of a G3.U70 wobble base pair is essential for the specificity of this reaction, but there is a debate whether direct minor-groove contact with the 2-amino group of G3 or a distortion of the acceptor stem induced by the wobble pair is the critical feature recognized by the synthetase. We here report the structure analysis of ALAwt at near-atomic resolution using twinned crystals. The crystal lattice is stabilized by a novel strontium binding motif between two cis-diolic O3'-terminal riboses. The two independent molecules in the asymmetric unit of the crystal show overall A-RNA geometry. A comparison with the crystal structure of the G3-C70 mutant of the acceptor stem (ALA(C70)) determined at 1.4 A exhibits a modulation in ALAwt of helical twist and slide due to the wobble base pair, but no recognizable distortion of the helix fragment distant from the wobble base pair. We suggest that a highly conserved hydration pattern in both grooves around the G3.U70 wobble base pair may be functionally significant.

-	~~==About this Structure==~~	+	Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution.,Mueller U, Schubel H, Sprinzl M, Heinemann U RNA. 1999 May;5(5):670-7. PMID:10334337<ref>PMID:10334337</ref>
-	~~[[434d]] is a 4 chain~~ structure~~. Full crystallographic information is available~~ from ~~[http://oca~~.~~weizmann~~.ac.~~il/oca~~-~~bin~~/~~ocashort?id=434D OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:016754981</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
-	[[Category: Heinemann, U.]]	+	== References ==
-	[[Category: Mueller, U.]]	+	<references/>
-	[[Category: Schuebel, H.]]	+	__TOC__
-	[[Category: Sprinzl, M.]]	+	</StructureSection>
-	[[Category: ~~7 base~~-pair trna ala acceptor stem]]	+	[[Category: Heinemann, U]]
		+	[[Category: Mueller, U]]
		+	[[Category: Schuebel, H]]
		+	[[Category: Sprinzl, M]]
		+	[[Category: Base-pair trna ala acceptor stem]]
	[[Category: Double helix]]		[[Category: Double helix]]
	[[Category: Rna]]		[[Category: Rna]]

OCA: Protected "434d" [edit=sysop:move=sysop]

2013-05-16T08:02:30Z

Protected "434d" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:02, 16 May 2013

OCA at 08:02, 16 May 2013

2013-05-16T08:02:27Z

←Older revision		Revision as of 08:02, 16 May 2013
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-	{{Seed}}
-	[[Image:434d.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_434d", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_434d\| PDB=434d \| SCENE= }}		{{STRUCTURE_434d\| PDB=434d \| SCENE= }}
-
	===5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3'===		===5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3'===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_10334337}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 10334337 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_10334337}}		{{ABSTRACT_PUBMED_10334337}}

	==About this Structure==		==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=434D OCA].	+	[[434d]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=434D OCA].

	==Reference==		==Reference==
-	~~Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution., Mueller U, Schubel H, Sprinzl M, Heinemann U, RNA. 1999 May;5(5):670-7.~~ PMID:~~[http:/~~/~~www.ncbi.nlm.nih.gov~~/~~pubmed~~/~~10334337 10334337]~~	+	<ref group="xtra">PMID:016754981</ref><references group="xtra"/><references/>
	[[Category: Heinemann, U.]]		[[Category: Heinemann, U.]]
	[[Category: Mueller, U.]]		[[Category: Mueller, U.]]
Line 30:		Line 14:
	[[Category: 7 base-pair trna ala acceptor stem]]		[[Category: 7 base-pair trna ala acceptor stem]]
	[[Category: Double helix]]		[[Category: Double helix]]
-		+	[[Category: Rna]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Thu Jul 3 13:19:09 2008''~~	+

OCA at 10:19, 3 July 2008

2008-07-03T10:19:10Z

←Older revision		Revision as of 10:19, 3 July 2008
Line 1:		Line 1:
-	[[Image:434d.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:434d.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_434d\| PDB=434d \| SCENE= }}		{{STRUCTURE_434d\| PDB=434d \| SCENE= }}

-	~~'''~~5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3'~~'''~~	+	===5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3'===


-	~~==Overview==~~	+	<!--
-	The ~~acceptor stem of Escherichia coli tRNA(Ala)~~, ~~rGGGGCUA.rUAGCUCC (ALAwt)~~, ~~contains~~ the ~~main identity element for~~ the ~~correct aminoacylation by the alanyl tRNA synthetase~~. ~~The presence of a G3~~.~~U70 wobble base pair is essential for the specificity of this reaction~~, ~~but there~~ is ~~a debate whether direct minor-groove contact with~~ the ~~2-amino group of G3 or a distortion of the acceptor stem induced by the wobble pair is the critical feature recognized by the synthetase~~. ~~We here report the structure analysis of ALAwt at near~~-~~atomic resolution using twinned crystals. The crystal lattice is stabilized by a novel strontium binding motif between two cis~~-diolic O3'-terminal riboses. The two independent molecules in the asymmetric unit of the crystal show overall A-RNA geometry. A comparison with the crystal structure of the G3-C70 mutant of the acceptor stem (ALA(C70)) determined at 1.4 A exhibits a modulation in ALAwt of helical twist and slide due to the wobble base pair, but no recognizable distortion of the helix fragment distant from the wobble base pair. We suggest that a highly conserved hydration pattern in both grooves around the G3.U70 wobble base pair may be functionally significant.	+	The line below this paragraph, {{ABSTRACT_PUBMED_10334337}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 10334337 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_10334337}}

	==About this Structure==		==About this Structure==
Line 26:		Line 30:
	[[Category: 7 base-pair trna ala acceptor stem]]		[[Category: 7 base-pair trna ala acceptor stem]]
	[[Category: Double helix]]		[[Category: Double helix]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May~~ ~~4 22~~:17:43 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul 3 13:19:09 2008''

OCA at 19:17, 4 May 2008

2008-05-04T19:17:44Z

←Older revision		Revision as of 19:17, 4 May 2008
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	[[Image:434d.gif\|left\|200px]]		[[Image:434d.gif\|left\|200px]]

-	{{Structure	+	<!--
-	\|PDB~~= 434d \|SIZE=350\|CAPTION= <~~scene ~~name='initialview01'>434d</scene>~~, ~~resolution 1~~.~~16Å~~	+	The line below this paragraph, containing "STRUCTURE_434d", creates the "Structure Box" on the page.
-	~~\|SITE=~~	+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	~~\|LIGAND= <scene name='pdbligand=A:ADENOSINE~~-~~5'~~-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=C:CYTIDINE-5'-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=G:GUANOSINE-5'-MONOPHOSPHATE'>G</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene>, <scene name='pdbligand=U:URIDINE-5'-MONOPHOSPHATE'>U</scene>	+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	\|~~ACTIVITY~~=	+	or leave the SCENE parameter empty for the default display.
-	\|~~GENE~~=	+	-->
-	~~\|DOMAIN=~~	+	{{STRUCTURE_434d\| PDB=434d \| SCENE= }}
-	~~\|RELATEDENTRY=~~	+
-	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=434d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=434d OCA], [http://www.ebi.ac.uk/pdbsum/434d PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=434d RCSB]</span>	+
-	}}	+

	'''5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3''''		'''5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3''''
Line 19:		Line 16:

	==About this Structure==		==About this Structure==
-	~~434D is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=434D OCA].	+	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=434D OCA].

	==Reference==		==Reference==
	Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution., Mueller U, Schubel H, Sprinzl M, Heinemann U, RNA. 1999 May;5(5):670-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10334337 10334337]		Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution., Mueller U, Schubel H, Sprinzl M, Heinemann U, RNA. 1999 May;5(5):670-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10334337 10334337]
-	[[Category: Protein complex]]
	[[Category: Heinemann, U.]]		[[Category: Heinemann, U.]]
	[[Category: Mueller, U.]]		[[Category: Mueller, U.]]
Line 29:		Line 25:
	[[Category: Sprinzl, M.]]		[[Category: Sprinzl, M.]]
	[[Category: 7 base-pair trna ala acceptor stem]]		[[Category: 7 base-pair trna ala acceptor stem]]
-	[[Category: ~~double~~ helix]]	+	[[Category: Double helix]]
-		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 22:17:43 2008''
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Mar 31 05~~:37:09 2008''	+

OCA at 02:37, 31 March 2008

2008-03-31T02:37:10Z

←Older revision		Revision as of 02:37, 31 March 2008
Line 4:		Line 4:
	\|PDB= 434d \|SIZE=350\|CAPTION= <scene name='initialview01'>434d</scene>, resolution 1.16Å		\|PDB= 434d \|SIZE=350\|CAPTION= <scene name='initialview01'>434d</scene>, resolution 1.16Å
	\|SITE=		\|SITE=
-	\|LIGAND= <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene> ~~and~~ <scene name='pdbligand=NA:~~SODIUM ION~~'>NA</scene>	+	\|LIGAND= <scene name='pdbligand=A:ADENOSINE-5'-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=C:CYTIDINE-5'-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=G:GUANOSINE-5'-MONOPHOSPHATE'>G</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene>, <scene name='pdbligand=U:URIDINE-5'-MONOPHOSPHATE'>U</scene>
	\|ACTIVITY=		\|ACTIVITY=
	\|GENE=		\|GENE=
		+	\|DOMAIN=
		+	\|RELATEDENTRY=
		+	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=434d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=434d OCA], [http://www.ebi.ac.uk/pdbsum/434d PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=434d RCSB]</span>
	}}		}}

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	[[Category: Schuebel, H.]]		[[Category: Schuebel, H.]]
	[[Category: Sprinzl, M.]]		[[Category: Sprinzl, M.]]
-	[[Category: NA]]
-	[[Category: SR]]
	[[Category: 7 base-pair trna ala acceptor stem]]		[[Category: 7 base-pair trna ala acceptor stem]]
	[[Category: double helix]]		[[Category: double helix]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu~~ Mar ~~20 19~~:08:15 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:37:09 2008''

OCA at 17:08, 20 March 2008

2008-03-20T17:08:16Z

←Older revision		Revision as of 17:08, 20 March 2008
Line 1:		Line 1:
-	[[Image:434d.gif\|left\|200px]]~~<br /><applet load~~="434d~~" size~~="350~~" color~~=~~"white" frame="true" align~~=~~"right" spinBox="true"~~	+	[[Image:434d.gif\|left\|200px]]
-	~~caption="~~434d, resolution 1.16Å" />	+
-	'''5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3''''~~<br />~~	+	{{Structure
		+	\|PDB= 434d \|SIZE=350\|CAPTION= <scene name='initialview01'>434d</scene>, resolution 1.16Å
		+	\|SITE=
		+	\|LIGAND= <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene> and <scene name='pdbligand=NA:SODIUM ION'>NA</scene>
		+	\|ACTIVITY=
		+	\|GENE=
		+	}}
		+
		+	'''5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3''''
		+

	==Overview==		==Overview==
Line 7:		Line 16:

	==About this Structure==		==About this Structure==
-	434D is a [~~http://en.wikipedia.org/wiki/Protein_complex~~ Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/ ~~] with <scene name='pdbligand=SR:'>SR</scene> and <scene name='pdbligand=NA:'>NA</scene> as [http://en.wikipedia.org/wiki/ligands ligands~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=434D OCA].	+	434D is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=434D OCA].

	==Reference==		==Reference==
-	Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution., Mueller U, Schubel H, Sprinzl M, Heinemann U, RNA. 1999 May;5(5):670-7. PMID:[http://~~ispc~~.~~weizmann~~.ac.~~il/~~/~~pmbin~~/~~getpm?pmid=~~10334337 10334337]	+	Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution., Mueller U, Schubel H, Sprinzl M, Heinemann U, RNA. 1999 May;5(5):670-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10334337 10334337]
	[[Category: Protein complex]]		[[Category: Protein complex]]
	[[Category: Heinemann, U.]]		[[Category: Heinemann, U.]]
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	[[Category: double helix]]		[[Category: double helix]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu ~~Feb 21~~ 19:12:11 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:08:15 2008''