4agh - Revision history

OCA at 10:50, 9 May 2024

2024-05-09T10:50:36Z

←Older revision		Revision as of 10:50, 9 May 2024
Line 3:		Line 3:
	<StructureSection load='4agh' size='340' side='right'caption='[[4agh]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='4agh' size='340' side='right'caption='[[4agh]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4agh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bpi_841383 Bpi 841383~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AGH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AGH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4agh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyricularia_oryzae Pyricularia oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AGH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AGH FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4agh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4agh OCA], [https://pdbe.org/4agh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4agh RCSB], [https://www.ebi.ac.uk/pdbsum/4agh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4agh ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.787Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4agh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4agh OCA], [https://pdbe.org/4agh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4agh RCSB], [https://www.ebi.ac.uk/pdbsum/4agh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4agh ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/G4NEJ8_MAGO7 G4NEJ8_MAGO7]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 19:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bpi 841383]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Huang, D]]	+	[[Category: Pyricularia oryzae]]
-	[[Category: Huang, J]]	+	[[Category: Huang D]]
-	[[Category: Peng, Y]]	+	[[Category: Huang J]]
-	[[Category: Zhao, Y]]	+	[[Category: Peng Y]]
-	[[Category: Liu, J]]	+	[[Category: Zhao Y]]
-	~~[[Category: Ssdna binding protein]]~~	+	[[Category: Liu J]]
-	~~[[Category: Transcription~~]]	+

OCA at 05:33, 25 August 2022

2022-08-25T05:33:24Z

←Older revision		Revision as of 05:33, 25 August 2022
Line 3:		Line 3:
	<StructureSection load='4agh' size='340' side='right'caption='[[4agh]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='4agh' size='340' side='right'caption='[[4agh]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4agh]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bpi_841383 Bpi 841383]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AGH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4AGH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4agh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bpi_841383 Bpi 841383]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AGH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AGH FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4agh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4agh OCA], [~~http~~://pdbe.org/4agh PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4agh RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4agh PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4agh ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4agh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4agh OCA], [https://pdbe.org/4agh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4agh RCSB], [https://www.ebi.ac.uk/pdbsum/4agh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4agh ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Bpi 841383]]		[[Category: Bpi 841383]]
		+	[[Category: Large Structures]]
	[[Category: Huang, D]]		[[Category: Huang, D]]
	[[Category: Huang, J]]		[[Category: Huang, J]]

OCA at 09:24, 6 March 2019

2019-03-06T09:24:15Z

←Older revision		Revision as of 09:24, 6 March 2019
Line 1:		Line 1:

	==Structural features of ssDNA binding protein MoSub1 from Magnaporthe oryzae==		==Structural features of ssDNA binding protein MoSub1 from Magnaporthe oryzae==
-	<StructureSection load='4agh' size='340' side='right' caption='[[4agh]], [[Resolution\|resolution]] 1.79Å' scene=''>	+	<StructureSection load='4agh' size='340' side='right'caption='[[4agh]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4agh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Magor Magor~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AGH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4AGH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4agh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpi_841383 Bpi 841383]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AGH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4AGH FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4agh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4agh OCA], [http://pdbe.org/4agh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4agh RCSB], [http://www.ebi.ac.uk/pdbsum/4agh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4agh ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4agh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4agh OCA], [http://pdbe.org/4agh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4agh RCSB], [http://www.ebi.ac.uk/pdbsum/4agh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4agh ProSAT]</span></td></tr>
	</table>		</table>
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Magor~~]]	+	[[Category: Bpi 841383]]
	[[Category: Huang, D]]		[[Category: Huang, D]]
	[[Category: Huang, J]]		[[Category: Huang, J]]
-	[[Category: Liu, J]]
	[[Category: Peng, Y]]		[[Category: Peng, Y]]
	[[Category: Zhao, Y]]		[[Category: Zhao, Y]]
		+	[[Category: Liu, J]]
	[[Category: Ssdna binding protein]]		[[Category: Ssdna binding protein]]
	[[Category: Transcription]]		[[Category: Transcription]]

OCA at 13:48, 11 August 2016

2016-08-11T13:48:22Z

←Older revision		Revision as of 13:48, 11 August 2016
Line 1:		Line 1:
		+
	==Structural features of ssDNA binding protein MoSub1 from Magnaporthe oryzae==		==Structural features of ssDNA binding protein MoSub1 from Magnaporthe oryzae==
	<StructureSection load='4agh' size='340' side='right' caption='[[4agh]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='4agh' size='340' side='right' caption='[[4agh]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4agh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Magnaporthe_oryzae Magnaporthe oryzae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AGH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4AGH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4agh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Magor Magor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AGH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4AGH FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4agh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4agh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4agh RCSB], [http://www.ebi.ac.uk/pdbsum/4agh PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4agh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4agh OCA], [http://pdbe.org/4agh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4agh RCSB], [http://www.ebi.ac.uk/pdbsum/4agh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4agh ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 13:		Line 14:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4agh" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Magnaporthe oryzae~~]]	+	[[Category: Magor]]
	[[Category: Huang, D]]		[[Category: Huang, D]]
	[[Category: Huang, J]]		[[Category: Huang, J]]

OCA at 10:49, 4 January 2015

2015-01-04T10:49:41Z

←Older revision		Revision as of 10:49, 4 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4agh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Magnaporthe_oryzae Magnaporthe oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AGH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4AGH FirstGlance]. <br>		<table><tr><td colspan='2'>[[4agh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Magnaporthe_oryzae Magnaporthe oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AGH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4AGH FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4agh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4agh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4agh RCSB], [http://www.ebi.ac.uk/pdbsum/4agh PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4agh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4agh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4agh RCSB], [http://www.ebi.ac.uk/pdbsum/4agh PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 18:		Line 18:
	</StructureSection>		</StructureSection>
	[[Category: Magnaporthe oryzae]]		[[Category: Magnaporthe oryzae]]
-	[[Category: Huang, D.]]	+	[[Category: Huang, D]]
-	[[Category: Huang, J.]]	+	[[Category: Huang, J]]
-	[[Category: Liu, J.]]	+	[[Category: Liu, J]]
-	[[Category: Peng, Y.]]	+	[[Category: Peng, Y]]
-	[[Category: Zhao, Y.]]	+	[[Category: Zhao, Y]]
	[[Category: Ssdna binding protein]]		[[Category: Ssdna binding protein]]
	[[Category: Transcription]]		[[Category: Transcription]]

OCA at 06:52, 25 June 2014

2014-06-25T06:52:59Z

←Older revision		Revision as of 06:52, 25 June 2014
Line 1:		Line 1:
-	[[~~Image~~:4agh.~~png\|left\|200px~~]]	+	==Structural features of ssDNA binding protein MoSub1 from Magnaporthe oryzae==
		+	<StructureSection load='4agh' size='340' side='right' caption='[[4agh]], [[Resolution\|resolution]] 1.79Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4agh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Magnaporthe_oryzae Magnaporthe oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AGH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4AGH FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4agh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4agh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4agh RCSB], [http://www.ebi.ac.uk/pdbsum/4agh PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The well studied general transcription cofactor Sub1/PC4 has multiple functions in transcription. It plays both a negative and a positive role in transcription initiation and is involved in elongation and downstream transcription processes and as a transcription reinitiation factor. MoSub1, a Sub1/PC4 orthologue from rice blast fungus, binds the single-stranded DNA dT(12) tightly with an affinity of 186 nM. The crystal structure of MoSub1 has been solved to 1.79 A resolution. The structure of the protein shows high similiarity to the structure of PC4 and it has a similar dimer interface and DNA-binding region to PC4, indicating that MoSub1 could bind DNA using the same motif as other proteins of the Sub1/PC4 family. There are two novel features in the MoSub1 structure: a region N-terminal to the DNA-binding domain and a C-terminal extension. The region N-terminal to the DNA-binding domain of MoSub1 turns back towards the DNA-binding site and may interact directly with DNA or the DNA-binding site. The C-terminal extension region, which is absent in PC4, may not be capable of interacting with DNA and is one possible reason for the differences between Sub1 and PC4.

-	~~{{STRUCTURE_4agh\| PDB=4agh \| SCENE= }}~~	+	Structural features of the single-stranded DNA-binding protein MoSub1 from Magnaporthe oryzae.,Huang J, Zhao Y, Huang D, Liu H, Justin N, Zhao W, Liu J, Peng Y Acta Crystallogr D Biol Crystallogr. 2012 Sep;68(Pt 9):1071-6. Epub 2012 Aug 18. PMID:22948907<ref>PMID:22948907</ref>

-	~~===Structural features~~ of ~~ssDNA binding protein MoSub1 from Magnaporthe oryzae===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_22948907}}~~	+	== References ==
-		+	<references/>
-	==~~About this Structure~~==	+	__TOC__
-	~~[[4agh]] is a 1 chain structure with sequence from [http:~~//~~en.wikipedia.org/wiki/Magnaporthe_oryzae Magnaporthe oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AGH OCA].~~	+	</StructureSection>
	[[Category: Magnaporthe oryzae]]		[[Category: Magnaporthe oryzae]]
	[[Category: Huang, D.]]		[[Category: Huang, D.]]

OCA at 06:06, 19 September 2012

2012-09-19T06:06:56Z

←Older revision		Revision as of 06:06, 19 September 2012
Line 1:		Line 1:
-	[[Image:4agh.~~jpg~~\|left\|200px]]	+	[[Image:4agh.png\|left\|200px]]

	{{STRUCTURE_4agh\| PDB=4agh \| SCENE= }}		{{STRUCTURE_4agh\| PDB=4agh \| SCENE= }}
Line 5:		Line 5:
	===Structural features of ssDNA binding protein MoSub1 from Magnaporthe oryzae===		===Structural features of ssDNA binding protein MoSub1 from Magnaporthe oryzae===

		+	{{ABSTRACT_PUBMED_22948907}}

	==About this Structure==		==About this Structure==

OCA at 05:19, 29 August 2012

2012-08-29T05:19:49Z

←Older revision		Revision as of 05:19, 29 August 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:4agh.jpg\|left\|200px]]

-	~~The entry~~ 4agh ~~is ON HOLD~~ ~~until Paper Publication~~	+	{{STRUCTURE_4agh\| PDB=4agh \| SCENE= }}

-	~~Authors: Huang, J., Zhao, Y., Huang, D., liu, J., Peng, Y.~~	+	===Structural features of ssDNA binding protein MoSub1 from Magnaporthe oryzae===

-	~~Description~~: ~~Structural features of ssDNA binding protein MoSub1~~ from Magnaporthe oryzae	+
		+	==About this Structure==
		+	[[4agh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Magnaporthe_oryzae Magnaporthe oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AGH OCA].
		+	[[Category: Magnaporthe oryzae]]
		+	[[Category: Huang, D.]]
		+	[[Category: Huang, J.]]
		+	[[Category: Liu, J.]]
		+	[[Category: Peng, Y.]]
		+	[[Category: Zhao, Y.]]
		+	[[Category: Ssdna binding protein]]
		+	[[Category: Transcription]]

OCA at 05:16, 1 August 2012

2012-08-01T05:16:24Z

←Older revision		Revision as of 05:16, 1 August 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4agh is ON HOLD	+	The entry 4agh is ON HOLD until Paper Publication

	Authors: Huang, J., Zhao, Y., Huang, D., liu, J., Peng, Y.		Authors: Huang, J., Zhao, Y., Huang, D., liu, J., Peng, Y.

	Description: Structural features of ssDNA binding protein MoSub1 from Magnaporthe oryzae		Description: Structural features of ssDNA binding protein MoSub1 from Magnaporthe oryzae

OCA: Protected "4agh" [edit=sysop:move=sysop]

2012-02-08T06:08:41Z

Protected "4agh" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:08, 8 February 2012