4b8n - Revision history

OCA at 11:45, 20 December 2023

2023-12-20T11:45:44Z

←Older revision		Revision as of 11:45, 20 December 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4b8n]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Ostreococcus_tauri_virus_2 Ostreococcus tauri virus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B8N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4B8N FirstGlance]. <br>		<table><tr><td colspan='2'>[[4b8n]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Ostreococcus_tauri_virus_2 Ostreococcus tauri virus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B8N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4B8N FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.95Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4b8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b8n OCA], [https://pdbe.org/4b8n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4b8n RCSB], [https://www.ebi.ac.uk/pdbsum/4b8n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4b8n ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4b8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b8n OCA], [https://pdbe.org/4b8n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4b8n RCSB], [https://www.ebi.ac.uk/pdbsum/4b8n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4b8n ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/E4WM77_9PHYC E4WM77_9PHYC]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 16:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 4b8n" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4b8n" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Cytochrome b5 3D structures\|Cytochrome b5 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 22:		Line 28:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Ostreococcus tauri virus 2]]		[[Category: Ostreococcus tauri virus 2]]
-	[[Category: Allen~~, M J~~]]	+	[[Category: Allen MJ]]
-	[[Category: Isupov, M]]	+	[[Category: Isupov M]]
-	[[Category: Kelly~~, S L~~]]	+	[[Category: Kelly SL]]
-	[[Category: Lamb~~, D C~~]]	+	[[Category: Lamb DC]]
-	[[Category: Littlechild~~, J A~~]]	+	[[Category: Littlechild JA]]
-	[[Category: Love, J]]	+	[[Category: Love J]]
-	[[Category: Reid~~, E L~~]]	+	[[Category: Reid EL]]
-	[[Category: Weynberg~~, K D~~]]	+	[[Category: Weynberg KD]]
-	[[Category: Wilson~~, W H]]~~	+	[[Category: Wilson WH]]
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Viral cytochrome b5~~]]	+

OCA at 07:03, 31 August 2022

2022-08-31T07:03:41Z

←Older revision		Revision as of 07:03, 31 August 2022
Line 3:		Line 3:
	<StructureSection load='4b8n' size='340' side='right'caption='[[4b8n]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='4b8n' size='340' side='right'caption='[[4b8n]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4b8n]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Ostreococcus_tauri_virus_2 Ostreococcus tauri virus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B8N OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4B8N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4b8n]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Ostreococcus_tauri_virus_2 Ostreococcus tauri virus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B8N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4B8N FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4b8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b8n OCA], [~~http~~://pdbe.org/4b8n PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4b8n RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4b8n PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4b8n ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4b8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b8n OCA], [https://pdbe.org/4b8n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4b8n RCSB], [https://www.ebi.ac.uk/pdbsum/4b8n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4b8n ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 13:51, 13 March 2019

2019-03-13T13:51:37Z

←Older revision		Revision as of 13:51, 13 March 2019
Line 1:		Line 1:

	==Cytochrome b5 of Ostreococcus tauri virus 2==		==Cytochrome b5 of Ostreococcus tauri virus 2==
-	<StructureSection load='4b8n' size='340' side='right' caption='[[4b8n]], [[Resolution\|resolution]] 1.95Å' scene=''>	+	<StructureSection load='4b8n' size='340' side='right'caption='[[4b8n]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4b8n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ostreococcus_tauri_virus_2 Ostreococcus tauri virus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4B8N FirstGlance]. <br>		<table><tr><td colspan='2'>[[4b8n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ostreococcus_tauri_virus_2 Ostreococcus tauri virus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4B8N FirstGlance]. <br>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Ostreococcus tauri virus 2]]		[[Category: Ostreococcus tauri virus 2]]
	[[Category: Allen, M J]]		[[Category: Allen, M J]]

OCA at 08:48, 11 August 2016

2016-08-11T08:48:59Z

←Older revision		Revision as of 08:48, 11 August 2016
Line 1:		Line 1:
		+
	==Cytochrome b5 of Ostreococcus tauri virus 2==		==Cytochrome b5 of Ostreococcus tauri virus 2==
	<StructureSection load='4b8n' size='340' side='right' caption='[[4b8n]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='4b8n' size='340' side='right' caption='[[4b8n]], [[Resolution\|resolution]] 1.95Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[4b8n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ostreococcus_tauri_virus_2 Ostreococcus tauri virus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4B8N FirstGlance]. <br>		<table><tr><td colspan='2'>[[4b8n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ostreococcus_tauri_virus_2 Ostreococcus tauri virus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4B8N FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4b8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b8n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4b8n RCSB], [http://www.ebi.ac.uk/pdbsum/4b8n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4b8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b8n OCA], [http://pdbe.org/4b8n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4b8n RCSB], [http://www.ebi.ac.uk/pdbsum/4b8n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4b8n ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 14:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4b8n" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 14:23, 4 January 2015

2015-01-04T14:23:18Z

←Older revision		Revision as of 14:23, 4 January 2015
Line 1:		Line 1:
-	~~{{STRUCTURE_4b8n\| PDB~~=4b8n \| ~~SCENE~~= }}	+	==Cytochrome b5 of Ostreococcus tauri virus 2==
-	===~~Cytochrome b5 of~~ Ostreococcus tauri virus 2===	+	<StructureSection load='4b8n' size='340' side='right' caption='[[4b8n]], [[Resolution\|resolution]] 1.95Å' scene=''>
-	~~{{ABSTRACT_PUBMED_24100138}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4b8n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ostreococcus_tauri_virus_2 Ostreococcus tauri virus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4B8N FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4b8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b8n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4b8n RCSB], [http://www.ebi.ac.uk/pdbsum/4b8n PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cytochrome b5 is a ubiquitous electron transport protein. The sequenced viral OtV-2 genome, which infects Ostreococcus tauri, was predicted to encode a putative cytochrome b5 enzyme. Using purified OtV-2 cytochrome b5 we confirm this protein has identical spectral properties to purified human cytochrome b5 and additionally that the viral enzyme can substitute for yeast cytochrome b5 in yeast cytochrome P450 51 mediated sterol 14alpha-demethylation. The crystal structure of the OtV-2 cytochrome b5 enzyme reveals a single domain, comprising four beta sheets, four alpha helices and a haem moiety, which is similar to that found in larger eukaryotic cytochrome proteins. As a product of a horizontal gene transfer event involving a subdomain of the host fumarate reductase-like protein, OtV-2 cytochrome b5 appears to have diverged in function and is likely to have evolved an entirely new role for the virus during infection. Indeed, lacking a hydrophobic C-terminal anchor, OtV-2 encodes the first cytosolic cytochrome b5 characterised. The lack of requirement for membrane attachment (in contrast to all other microsomal cytochrome b5s) may be a reflection of the small size of the host cell, further emphasizes the unique nature of this virus gene product and draws attention to the potential importance of cytochrome b5 metabolic activity at the extremes of cellular scale.

-	~~==About this Structure==~~	+	Functional and structural characterisation of a viral cytochrome b5.,Reid EL, Weynberg KD, Love J, Isupov MN, Littlechild JA, Wilson WH, Kelly SL, Lamb DC, Allen MJ FEBS Lett. 2013 Nov 15;587(22):3633-9. doi: 10.1016/j.febslet.2013.09.035. Epub, 2013 Oct 4. PMID:24100138<ref>PMID:24100138</ref>
-	~~[[4b8n]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Ostreococcus_tauri_virus_2 Ostreococcus tauri virus 2]~~. ~~Full crystallographic information is available from [http~~:/~~/oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=4B8N OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:024100138</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Ostreococcus tauri virus 2]]		[[Category: Ostreococcus tauri virus 2]]
-	[[Category: Allen, M J.]]	+	[[Category: Allen, M J]]
-	[[Category: Isupov, M.]]	+	[[Category: Isupov, M]]
-	[[Category: Kelly, S L.]]	+	[[Category: Kelly, S L]]
-	[[Category: Lamb, D C.]]	+	[[Category: Lamb, D C]]
-	[[Category: Littlechild, J A.]]	+	[[Category: Littlechild, J A]]
-	[[Category: Love, J.]]	+	[[Category: Love, J]]
-	[[Category: Reid, E L.]]	+	[[Category: Reid, E L]]
-	[[Category: Weynberg, K D.]]	+	[[Category: Weynberg, K D]]
-	[[Category: Wilson, W H.]]	+	[[Category: Wilson, W H]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Viral cytochrome b5]]		[[Category: Viral cytochrome b5]]

OCA at 06:17, 23 April 2014

2014-04-23T06:17:43Z

←Older revision		Revision as of 06:17, 23 April 2014
Line 1:		Line 1:
	{{STRUCTURE_4b8n\| PDB=4b8n \| SCENE= }}		{{STRUCTURE_4b8n\| PDB=4b8n \| SCENE= }}
	===Cytochrome b5 of Ostreococcus tauri virus 2===		===Cytochrome b5 of Ostreococcus tauri virus 2===
		+	{{ABSTRACT_PUBMED_24100138}}

	==About this Structure==		==About this Structure==
	[[4b8n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ostreococcus_tauri_virus_2 Ostreococcus tauri virus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B8N OCA].		[[4b8n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ostreococcus_tauri_virus_2 Ostreococcus tauri virus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B8N OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:024100138</ref><references group="xtra"/><references/>
	[[Category: Ostreococcus tauri virus 2]]		[[Category: Ostreococcus tauri virus 2]]
	[[Category: Allen, M J.]]		[[Category: Allen, M J.]]

OCA at 10:54, 4 September 2013

2013-09-04T10:54:11Z

←Older revision		Revision as of 10:54, 4 September 2013
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{STRUCTURE_4b8n\| PDB=4b8n \| SCENE= }}
		+	===Cytochrome b5 of Ostreococcus tauri virus 2===

-	~~The entry~~ 4b8n is ~~ON HOLD until Paper Publication~~	+	==About this Structure==
-		+	[[4b8n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ostreococcus_tauri_virus_2 Ostreococcus tauri virus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B8N OCA].
-	~~Authors~~: ~~Isupov, M~~.~~, Reid, E~~.L.~~, Weynberg, K~~.D., ~~Love,~~ J., ~~Wilson, W~~.~~H.,~~ Kelly, S.L., Lamb, D.C., ~~Allen, M~~.J., ~~Littlechild~~, J.A.	+	[[Category: Ostreococcus tauri virus 2]]
-		+	[[Category: Allen, M J.]]
-	~~Description~~: ~~Cytochrome~~ b5 ~~of Ostreococcus tauri virus 2~~	+	[[Category: Isupov, M.]]
		+	[[Category: Kelly, S L.]]
		+	[[Category: Lamb, D C.]]
		+	[[Category: Littlechild, J A.]]
		+	[[Category: Love, J.]]
		+	[[Category: Reid, E L.]]
		+	[[Category: Weynberg, K D.]]
		+	[[Category: Wilson, W H.]]
		+	[[Category: Electron transport]]
		+	[[Category: Viral cytochrome b5]]

OCA: Protected "4b8n" [edit=sysop:move=sysop]

2012-09-05T04:44:45Z

Protected "4b8n" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:44, 5 September 2012

OCA: New page: '''Unreleased structure''' The entry 4b8n is ON HOLD until Paper Publication Authors: Isupov, M., Reid, E.L., Weynberg, K.D., Love, J., Wilson, W.H., Kelly, S.L., Lamb, D.C., Allen, M.J...

2012-09-05T04:44:44Z

New page: '''Unreleased structure''' The entry 4b8n is ON HOLD until Paper Publication Authors: Isupov, M., Reid, E.L., Weynberg, K.D., Love, J., Wilson, W.H., Kelly, S.L., Lamb, D.C., Allen, M.J...

New page

'''Unreleased structure'''

The entry 4b8n is ON HOLD until Paper Publication

Authors: Isupov, M., Reid, E.L., Weynberg, K.D., Love, J., Wilson, W.H., Kelly, S.L., Lamb, D.C., Allen, M.J., Littlechild, J.A.

Description: Cytochrome b5 of Ostreococcus tauri virus 2