4bfo - Revision history

OCA at 11:50, 20 December 2023

2023-12-20T11:50:18Z

←Older revision		Revision as of 11:50, 20 December 2023
Line 3:		Line 3:
	<StructureSection load='4bfo' size='340' side='right'caption='[[4bfo]], [[Resolution\|resolution]] 1.18Å' scene=''>		<StructureSection load='4bfo' size='340' side='right'caption='[[4bfo]], [[Resolution\|resolution]] 1.18Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4bfo]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BFO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BFO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4bfo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhizopus_arrhizus Rhizopus arrhizus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BFO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BFO FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=GLC:ALPHA~~-~~D-GLUCOSE'>GLC</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.175Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[4bfn\|4bfn]]</div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
-	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~"><~~b>Activity:</b></td><td class~~=~~"sblockDat"><span class~~=~~'plainlinks'>[https~~:~~//en.wikipedia.org/wiki/Glucan_1,4~~-~~alpha~~-~~glucosidase Glucan 1,4-alpha-glucosidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.3 3.2.1.3]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4bfo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bfo OCA], [https://pdbe.org/4bfo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4bfo RCSB], [https://www.ebi.ac.uk/pdbsum/4bfo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4bfo ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4bfo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bfo OCA], [https://pdbe.org/4bfo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4bfo RCSB], [https://www.ebi.ac.uk/pdbsum/4bfo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4bfo ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q2VC81_RHIOR Q2VC81_RHIOR]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Glucan 1,4-alpha-glucosidase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Chu, C H~~]]	+	[[Category: Rhizopus arrhizus]]
-	[[Category: ~~Li, K M~~]]	+	[[Category: Chu CH]]
-	[[Category: ~~Lin, S W~~]]	+	[[Category: Li KM]]
-	[[Category: ~~Sun, Y J~~]]	+	[[Category: Lin SW]]
-	[[Category: ~~Carbohydrate binding]]~~	+	[[Category: Sun YJ]]
-	~~[[Category: Hydrolase~~]]	+

OCA at 07:11, 31 August 2022

2022-08-31T07:11:59Z

←Older revision		Revision as of 07:11, 31 August 2022
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	<StructureSection load='4bfo' size='340' side='right'caption='[[4bfo]], [[Resolution\|resolution]] 1.18Å' scene=''>		<StructureSection load='4bfo' size='340' side='right'caption='[[4bfo]], [[Resolution\|resolution]] 1.18Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4bfo]] is a 1 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Atcc_56536 Atcc 56536]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BFO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4BFO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4bfo]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BFO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BFO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4bfn\|4bfn]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[4bfn\|4bfn]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Glucan_1,4-alpha-glucosidase Glucan 1,4-alpha-glucosidase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.3 3.2.1.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Glucan_1,4-alpha-glucosidase Glucan 1,4-alpha-glucosidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.3 3.2.1.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4bfo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bfo OCA], [~~http~~://pdbe.org/4bfo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4bfo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4bfo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4bfo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4bfo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bfo OCA], [https://pdbe.org/4bfo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4bfo RCSB], [https://www.ebi.ac.uk/pdbsum/4bfo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4bfo ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 56536]]
	[[Category: Glucan 1,4-alpha-glucosidase]]		[[Category: Glucan 1,4-alpha-glucosidase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 13:39, 13 March 2019

2019-03-13T13:39:36Z

←Older revision		Revision as of 13:39, 13 March 2019
Line 1:		Line 1:

	==Crystal Structure of the Starch-Binding Domain from Rhizopus oryzae Glucoamylase in Complex with isomaltotriose==		==Crystal Structure of the Starch-Binding Domain from Rhizopus oryzae Glucoamylase in Complex with isomaltotriose==
-	<StructureSection load='4bfo' size='340' side='right' caption='[[4bfo]], [[Resolution\|resolution]] 1.18Å' scene=''>	+	<StructureSection load='4bfo' size='340' side='right'caption='[[4bfo]], [[Resolution\|resolution]] 1.18Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4bfo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_56536 Atcc 56536]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BFO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BFO FirstGlance]. <br>		<table><tr><td colspan='2'>[[4bfo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_56536 Atcc 56536]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BFO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BFO FirstGlance]. <br>
Line 24:		Line 24:
	[[Category: Atcc 56536]]		[[Category: Atcc 56536]]
	[[Category: Glucan 1,4-alpha-glucosidase]]		[[Category: Glucan 1,4-alpha-glucosidase]]
		+	[[Category: Large Structures]]
	[[Category: Chu, C H]]		[[Category: Chu, C H]]
	[[Category: Li, K M]]		[[Category: Li, K M]]

OCA at 14:44, 11 August 2016

2016-08-11T14:44:22Z

←Older revision		Revision as of 14:44, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal Structure of the Starch-Binding Domain from Rhizopus oryzae Glucoamylase in Complex with isomaltotriose==		==Crystal Structure of the Starch-Binding Domain from Rhizopus oryzae Glucoamylase in Complex with isomaltotriose==
	<StructureSection load='4bfo' size='340' side='right' caption='[[4bfo]], [[Resolution\|resolution]] 1.18Å' scene=''>		<StructureSection load='4bfo' size='340' side='right' caption='[[4bfo]], [[Resolution\|resolution]] 1.18Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4bfn\|4bfn]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4bfn\|4bfn]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-glucosidase Glucan 1,4-alpha-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.3 3.2.1.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-glucosidase Glucan 1,4-alpha-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.3 3.2.1.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bfo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bfo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4bfo RCSB], [http://www.ebi.ac.uk/pdbsum/4bfo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bfo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bfo OCA], [http://pdbe.org/4bfo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4bfo RCSB], [http://www.ebi.ac.uk/pdbsum/4bfo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4bfo ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4bfo" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 13:07, 4 January 2015

2015-01-04T13:07:43Z

←Older revision		Revision as of 13:07, 4 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4bfo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_56536 Atcc 56536]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BFO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BFO FirstGlance]. <br>		<table><tr><td colspan='2'>[[4bfo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_56536 Atcc 56536]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BFO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BFO FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4bfn\|4bfn]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4bfn\|4bfn]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-glucosidase Glucan 1,4-alpha-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.3 3.2.1.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-glucosidase Glucan 1,4-alpha-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.3 3.2.1.3] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bfo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bfo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4bfo RCSB], [http://www.ebi.ac.uk/pdbsum/4bfo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bfo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bfo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4bfo RCSB], [http://www.ebi.ac.uk/pdbsum/4bfo PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 14:		Line 14:
	Crystal Structures of Starch Binding Domain from Rhizopus oryzae Glucoamylase in Complex with Isomaltooligosaccharide: Insights into Polysaccharide Binding Mechanism of CBM21 Family.,Chu CH, Li KM, Lin SW, Chang MD, Jiang TY, Sun YJ Proteins. 2013 Oct 9. doi: 10.1002/prot.24446. PMID:24108499<ref>PMID:24108499</ref>		Crystal Structures of Starch Binding Domain from Rhizopus oryzae Glucoamylase in Complex with Isomaltooligosaccharide: Insights into Polysaccharide Binding Mechanism of CBM21 Family.,Chu CH, Li KM, Lin SW, Chang MD, Jiang TY, Sun YJ Proteins. 2013 Oct 9. doi: 10.1002/prot.24446. PMID:24108499<ref>PMID:24108499</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 22:		Line 22:
	[[Category: Atcc 56536]]		[[Category: Atcc 56536]]
	[[Category: Glucan 1,4-alpha-glucosidase]]		[[Category: Glucan 1,4-alpha-glucosidase]]
-	[[Category: Chu, C H.]]	+	[[Category: Chu, C H]]
-	[[Category: Li, K M.]]	+	[[Category: Li, K M]]
-	[[Category: Lin, S W.]]	+	[[Category: Lin, S W]]
-	[[Category: Sun, Y J.]]	+	[[Category: Sun, Y J]]
	[[Category: Carbohydrate binding]]		[[Category: Carbohydrate binding]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 07:14, 28 May 2014

2014-05-28T07:14:18Z

←Older revision		Revision as of 07:14, 28 May 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_4bfo\| PDB=4bfo \| SCENE= }}~~	+	==Crystal Structure of the Starch-Binding Domain from Rhizopus oryzae Glucoamylase in Complex with isomaltotriose==
-	===Crystal Structure of the Starch-Binding Domain from Rhizopus oryzae Glucoamylase in Complex with isomaltotriose===	+	<StructureSection load='4bfo' size='340' side='right' caption='[[4bfo]], [[Resolution\|resolution]] 1.18Å' scene=''>
-	~~{{ABSTRACT_PUBMED_24108499}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4bfo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_56536 Atcc 56536]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BFO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BFO FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4bfn\|4bfn]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-glucosidase Glucan 1,4-alpha-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.3 3.2.1.3] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bfo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bfo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4bfo RCSB], [http://www.ebi.ac.uk/pdbsum/4bfo PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Glucoamylases are responsible for hydrolysis of starch and polysaccharides to yield beta-D-glucose. Rhizopus oryzae glucoamylase (RoGA) is composed of an N-terminal starch binding domain (SBD) and a C-terminal catalytic domain connected by an O-glycosylated linker. Two carbohydrate-binding sites in RoSBD have been identified, site I is created by three highly conserved aromatic residues, Trp47, Tyr83, and Tyr94, and site II is built up by Tyr32 and Phe58. Here the two crystal structures of RoSBD in complex with only alpha-(1,6)-linked isomaltotriose (RoSBD-isoG3) and isomaltotetraose (RoSBD-isoG4) have been determined at 1.2 A and 1.3 A, respectively. Interestingly, site II binding is observed in both complexes, while site I binding is only found in the RoSBD-isoG4 complex. Hence, site II acts as the recognition binding site for carbohydrate and site I accommodates site II to bind isoG4. Site I participates in sugar binding only when the number of glucosyl units of oligosaccharides is more than three. Taken together, two carbohydrate binding sites in RoSBD cooperate to reinforce binding mode of glucoamylase with polysaccharides as well as the starch. (c) Proteins 2013;. (c) 2013 Wiley Periodicals, Inc.

-	~~==About this Structure==~~	+	Crystal Structures of Starch Binding Domain from Rhizopus oryzae Glucoamylase in Complex with Isomaltooligosaccharide: Insights into Polysaccharide Binding Mechanism of CBM21 Family.,Chu CH, Li KM, Lin SW, Chang MD, Jiang TY, Sun YJ Proteins. 2013 Oct 9. doi: 10.1002/prot.24446. PMID:24108499<ref>PMID:24108499</ref>
-	~~[[4bfo]] is a 1 chain structure~~ with ~~sequence from [http~~:~~//en~~.~~wikipedia~~.~~org/wiki/Rhizopus_oryzae Rhizopus oryzae]~~. ~~Full crystallographic information is available from [http~~:/~~/oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=4BFO OCA].~~	+

-	==~~Reference~~==	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:024108499</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Atcc 56536]]
	[[Category: Glucan 1,4-alpha-glucosidase]]		[[Category: Glucan 1,4-alpha-glucosidase]]
-	[[Category: Rhizopus oryzae]]
	[[Category: Chu, C H.]]		[[Category: Chu, C H.]]
	[[Category: Li, K M.]]		[[Category: Li, K M.]]

OCA at 06:45, 23 October 2013

2013-10-23T06:45:59Z

←Older revision		Revision as of 06:45, 23 October 2013
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-	~~'''Unreleased structure'''~~	+	{{STRUCTURE_4bfo\| PDB=4bfo \| SCENE= }}
		+	===Crystal Structure of the Starch-Binding Domain from Rhizopus oryzae Glucoamylase in Complex with isomaltotriose===
		+	{{ABSTRACT_PUBMED_24108499}}

-	~~The entry~~ 4bfo is ~~ON HOLD until Paper Publication~~	+	==About this Structure==
		+	[[4bfo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhizopus_oryzae Rhizopus oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BFO OCA].

-	~~Authors~~: Chu, C.H., Li, K.M., Lin, S.W., Sun, Y.J.	+	==Reference==
-		+	<ref group="xtra">PMID:024108499</ref><references group="xtra"/><references/>
-	~~Description~~: ~~Crystal Structure of the Starch-Binding Domain from Rhizopus oryzae Glucoamylase in Complex with isomaltotriose~~	+	[[Category: Glucan 1,4-alpha-glucosidase]]
		+	[[Category: Rhizopus oryzae]]
		+	[[Category: Chu, C H.]]
		+	[[Category: Li, K M.]]
		+	[[Category: Lin, S W.]]
		+	[[Category: Sun, Y J.]]
		+	[[Category: Carbohydrate binding]]
		+	[[Category: Hydrolase]]

OCA at 00:37, 4 April 2013

2013-04-04T00:37:11Z

←Older revision		Revision as of 00:37, 4 April 2013
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4bfo is ON HOLD	+	The entry 4bfo is ON HOLD until Paper Publication

	Authors: Chu, C.H., Li, K.M., Lin, S.W., Sun, Y.J.		Authors: Chu, C.H., Li, K.M., Lin, S.W., Sun, Y.J.

-	Description: Crystal ~~Structures~~ of the Starch-Binding Domain from Rhizopus oryzae Glucoamylase in Complex with isomaltotriose	+	Description: Crystal Structure of the Starch-Binding Domain from Rhizopus oryzae Glucoamylase in Complex with isomaltotriose

OCA: Protected "4bfo" [edit=sysop:move=sysop]

2013-03-27T08:05:57Z

Protected "4bfo" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:05, 27 March 2013

OCA: New page: '''Unreleased structure''' The entry 4bfo is ON HOLD Authors: Chu, C.H., Li, K.M., Lin, S.W., Sun, Y.J. Description: Crystal Structures of the Starch-Binding Domain from Rhizopus oryza...

2013-03-27T08:05:56Z

New page: '''Unreleased structure''' The entry 4bfo is ON HOLD Authors: Chu, C.H., Li, K.M., Lin, S.W., Sun, Y.J. Description: Crystal Structures of the Starch-Binding Domain from Rhizopus oryza...

New page

'''Unreleased structure'''

The entry 4bfo is ON HOLD

Authors: Chu, C.H., Li, K.M., Lin, S.W., Sun, Y.J.

Description: Crystal Structures of the Starch-Binding Domain from Rhizopus oryzae Glucoamylase in Complex with isomaltotriose