4df1 - Revision history

OCA at 14:33, 14 March 2024

2024-03-14T14:33:53Z

←Older revision		Revision as of 14:33, 14 March 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4df1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrobaculum_neutrophilum_V24Sta Pyrobaculum neutrophilum V24Sta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DF1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DF1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4df1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrobaculum_neutrophilum_V24Sta Pyrobaculum neutrophilum V24Sta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DF1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DF1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMP:6-HYDROXYURIDINE-5-PHOSPHATE'>BMP</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.899Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMP:6-HYDROXYURIDINE-5-PHOSPHATE'>BMP</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4df1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4df1 OCA], [https://pdbe.org/4df1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4df1 RCSB], [https://www.ebi.ac.uk/pdbsum/4df1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4df1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4df1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4df1 OCA], [https://pdbe.org/4df1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4df1 RCSB], [https://www.ebi.ac.uk/pdbsum/4df1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4df1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/B1Y9Q9_PYRNV B1Y9Q9_PYRNV]]	+	[https://www.uniprot.org/uniprot/B1Y9Q9_PYRNV B1Y9Q9_PYRNV]

	==See Also==		==See Also==

OCA at 08:15, 21 September 2022

2022-09-21T08:15:16Z

←Older revision		Revision as of 08:15, 21 September 2022
Line 1:		Line 1:

	==Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus complexed with inhibitor BMP==		==Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus complexed with inhibitor BMP==
-	<StructureSection load='4df1' size='340' side='right' caption='[[4df1]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='4df1' size='340' side='right'caption='[[4df1]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4df1]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Pyrnv Pyrnv~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DF1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4DF1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4df1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrobaculum_neutrophilum_V24Sta Pyrobaculum neutrophilum V24Sta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DF1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DF1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMP:6-HYDROXYURIDINE-5-PHOSPHATE'>BMP</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMP:6-HYDROXYURIDINE-5-PHOSPHATE'>BMP</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4df0\|4df0]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4df1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4df1 OCA], [https://pdbe.org/4df1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4df1 RCSB], [https://www.ebi.ac.uk/pdbsum/4df1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4df1 ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Tneu_0023 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=444157 PYRNV])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4df1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4df1 OCA], [~~http~~://pdbe.org/4df1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4df1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4df1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4df1 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/B1Y9Q9_PYRNV B1Y9Q9_PYRNV]]

	==See Also==		==See Also==
-	*[[Uridine 5'-monophosphate synthase\|Uridine 5'-monophosphate synthase]]	+	*[[Uridine 5'-monophosphate synthase 3D structures\|Uridine 5'-monophosphate synthase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pyrnv~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Almo, S C~~]]	+	[[Category: Pyrobaculum neutrophilum V24Sta]]
-	[[Category: ~~Desai, B~~]]	+	[[Category: Almo SC]]
-	[[Category: ~~Fedorov, A A~~]]	+	[[Category: Desai B]]
-	[[Category: Fedorov~~, E V~~]]	+	[[Category: Fedorov AA]]
-	[[Category: ~~Gerlt, J A~~]]	+	[[Category: Fedorov EV]]
-	[[Category: ~~Inhibitor bmp]]~~	+	[[Category: Gerlt JA]]
-	~~[[Category: Lyase-lyase inhibitor complex]]~~	+
-	~~[[Category: Orotidine 5'-monophosphate decarboxylase]]~~	+
-	~~[[Category: Tim barrel~~]]	+

OCA at 02:45, 11 December 2016

2016-12-11T02:45:31Z

←Older revision		Revision as of 02:45, 11 December 2016
Line 1:		Line 1:
		+
	==Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus complexed with inhibitor BMP==		==Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus complexed with inhibitor BMP==
	<StructureSection load='4df1' size='340' side='right' caption='[[4df1]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='4df1' size='340' side='right' caption='[[4df1]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4df1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrobaculum_neutrophilum_v24sta Pyrobaculum neutrophilum v24sta~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DF1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DF1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4df1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrnv Pyrnv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DF1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DF1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMP:6-HYDROXYURIDINE-5-PHOSPHATE'>BMP</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMP:6-HYDROXYURIDINE-5-PHOSPHATE'>BMP</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4df0\|4df0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4df0\|4df0]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Tneu_0023 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=444157 ~~Pyrobaculum neutrophilum V24Sta~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Tneu_0023 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=444157 PYRNV])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4df1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4df1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4df1 RCSB], [http://www.ebi.ac.uk/pdbsum/4df1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4df1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4df1 OCA], [http://pdbe.org/4df1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4df1 RCSB], [http://www.ebi.ac.uk/pdbsum/4df1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4df1 ProSAT]</span></td></tr>
	</table>		</table>
		+
		+	==See Also==
		+	*[[Uridine 5'-monophosphate synthase\|Uridine 5'-monophosphate synthase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pyrobaculum neutrophilum v24sta~~]]	+	[[Category: Pyrnv]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Desai, B]]		[[Category: Desai, B]]

OCA at 14:50, 9 December 2014

2014-12-09T14:50:11Z

←Older revision		Revision as of 14:50, 9 December 2014
Line 1:		Line 1:
-	~~[[Image:4df1.jpg\|left\|200px]]~~	+	==Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus complexed with inhibitor BMP==
-		+	<StructureSection load='4df1' size='340' side='right' caption='[[4df1]], [[Resolution\|resolution]] 1.90Å' scene=''>
-	~~{{STRUCTURE_4df1\| PDB=4df1 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4df1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrobaculum_neutrophilum_v24sta Pyrobaculum neutrophilum v24sta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DF1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DF1 FirstGlance]. <br>
-	===Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus complexed with inhibitor BMP===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMP:6-HYDROXYURIDINE-5-PHOSPHATE'>BMP</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4df0\|4df0]]</td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Tneu_0023 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=444157 Pyrobaculum neutrophilum V24Sta])</td></tr>
-	==~~About this Structure~~==	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4df1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4df1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4df1 RCSB], [http://www.ebi.ac.uk/pdbsum/4df1 PDBsum]</span></td></tr>
-	[[4df1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrobaculum_neutrophilum_v24sta Pyrobaculum neutrophilum v24sta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DF1 OCA].	+	</table>
		+	__TOC__
		+	</StructureSection>
	[[Category: Pyrobaculum neutrophilum v24sta]]		[[Category: Pyrobaculum neutrophilum v24sta]]
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Desai, B.]]	+	[[Category: Desai, B]]
-	[[Category: Fedorov, A A.]]	+	[[Category: Fedorov, A A]]
-	[[Category: Fedorov, E V.]]	+	[[Category: Fedorov, E V]]
-	[[Category: Gerlt, J A.]]	+	[[Category: Gerlt, J A]]
	[[Category: Inhibitor bmp]]		[[Category: Inhibitor bmp]]
	[[Category: Lyase-lyase inhibitor complex]]		[[Category: Lyase-lyase inhibitor complex]]
	[[Category: Orotidine 5'-monophosphate decarboxylase]]		[[Category: Orotidine 5'-monophosphate decarboxylase]]
	[[Category: Tim barrel]]		[[Category: Tim barrel]]

OCA at 11:57, 23 January 2013

2013-01-23T11:57:35Z

←Older revision		Revision as of 11:57, 23 January 2013
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:4df1.jpg\|left\|200px]]

-	~~The entry~~ 4df1 ~~is ON HOLD~~ ~~until Jan 23 2014~~	+	{{STRUCTURE_4df1\| PDB=4df1 \| SCENE= }}

-	~~Authors: Fedorov, A.A., Fedorov, E.V., Desai, B., Gerlt, J.A., Almo, S.C.~~	+	===Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus complexed with inhibitor BMP===

-	~~Description: Crystal~~ structure ~~of orotidine~~ 5'-monophosphate decarboxylase ~~from Thermoproteus neutrophilus complexed with inhibitor BMP~~	+
		+	==About this Structure==
		+	[[4df1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrobaculum_neutrophilum_v24sta Pyrobaculum neutrophilum v24sta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DF1 OCA].
		+	[[Category: Pyrobaculum neutrophilum v24sta]]
		+	[[Category: Almo, S C.]]
		+	[[Category: Desai, B.]]
		+	[[Category: Fedorov, A A.]]
		+	[[Category: Fedorov, E V.]]
		+	[[Category: Gerlt, J A.]]
		+	[[Category: Inhibitor bmp]]
		+	[[Category: Lyase-lyase inhibitor complex]]
		+	[[Category: Orotidine 5'-monophosphate decarboxylase]]
		+	[[Category: Tim barrel]]

OCA at 07:40, 9 January 2013

2013-01-09T07:40:34Z

←Older revision		Revision as of 07:40, 9 January 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4df1 is ON HOLD until ~~Paper Publication~~	+	The entry 4df1 is ON HOLD until Jan 23 2014

	Authors: Fedorov, A.A., Fedorov, E.V., Desai, B., Gerlt, J.A., Almo, S.C.		Authors: Fedorov, A.A., Fedorov, E.V., Desai, B., Gerlt, J.A., Almo, S.C.

	Description: Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus complexed with inhibitor BMP		Description: Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus complexed with inhibitor BMP

OCA: Protected "4df1" [edit=sysop:move=sysop]

2012-02-01T07:02:10Z

Protected "4df1" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:02, 1 February 2012

OCA: New page: '''Unreleased structure''' The entry 4df1 is ON HOLD until Paper Publication Authors: Fedorov, A.A., Fedorov, E.V., Desai, B., Gerlt, J.A., Almo, S.C. Description: Crystal structure of...

2012-02-01T07:02:10Z

New page: '''Unreleased structure''' The entry 4df1 is ON HOLD until Paper Publication Authors: Fedorov, A.A., Fedorov, E.V., Desai, B., Gerlt, J.A., Almo, S.C. Description: Crystal structure of...

New page

'''Unreleased structure'''

The entry 4df1 is ON HOLD until Paper Publication

Authors: Fedorov, A.A., Fedorov, E.V., Desai, B., Gerlt, J.A., Almo, S.C.

Description: Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus complexed with inhibitor BMP