4f0r - Revision history

OCA at 11:43, 4 August 2016

2016-08-04T11:43:58Z

←Older revision		Revision as of 11:43, 4 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of an adenosine deaminase homolog from Chromobacterium violaceum (target NYSGRC-019589) bound Zn and 5'-Methylthioadenosine (unproductive complex)==		==Crystal structure of an adenosine deaminase homolog from Chromobacterium violaceum (target NYSGRC-019589) bound Zn and 5'-Methylthioadenosine (unproductive complex)==
	<StructureSection load='4f0r' size='340' side='right' caption='[[4f0r]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='4f0r' size='340' side='right' caption='[[4f0r]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4f0r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Chromobacterium_violaceum Chromobacterium violaceum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F0R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4F0R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4f0r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chrvo Chrvo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F0R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4F0R FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MTA:5-DEOXY-5-METHYLTHIOADENOSINE'>MTA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MTA:5-DEOXY-5-METHYLTHIOADENOSINE'>MTA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CV_1032, mtaD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~536 Chromobacterium violaceum~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CV_1032, mtaD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243365 CHRVO])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4f0r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f0r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4f0r RCSB], [http://www.ebi.ac.uk/pdbsum/4f0r PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4f0r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f0r OCA], [http://pdbe.org/4f0r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4f0r RCSB], [http://www.ebi.ac.uk/pdbsum/4f0r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4f0r ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Chromobacterium violaceum~~]]	+	[[Category: Chrvo]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Bonanno, J B]]		[[Category: Bonanno, J B]]

OCA at 14:03, 24 December 2014

2014-12-24T14:03:49Z

←Older revision		Revision as of 14:03, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4f0r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F0R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4F0R FirstGlance]. <br>		<table><tr><td colspan='2'>[[4f0r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F0R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4F0R FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MTA:5-DEOXY-5-METHYLTHIOADENOSINE'>MTA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MTA:5-DEOXY-5-METHYLTHIOADENOSINE'>MTA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CV_1032, mtaD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536 Chromobacterium violaceum])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CV_1032, mtaD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536 Chromobacterium violaceum])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4f0r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f0r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4f0r RCSB], [http://www.ebi.ac.uk/pdbsum/4f0r PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4f0r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f0r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4f0r RCSB], [http://www.ebi.ac.uk/pdbsum/4f0r PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q7NZ90_CHRVO Q7NZ90_CHRVO]] Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine (By similarity).[HAMAP-Rule:MF_01281]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Chromobacterium violaceum]]		[[Category: Chromobacterium violaceum]]
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Bonanno, J B.]]	+	[[Category: Bonanno, J B]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Kim, J.]]	+	[[Category: Kim, J]]
-	[[Category: ~~NYSGRC, New York~~ Structural ~~Genomics Research Consortium.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Raushel, F M.]]	+	[[Category: Raushel, F M]]
-	[[Category: Sauder, J M.]]	+	[[Category: Sauder, J M]]
-	[[Category: Vetting, M W.]]	+	[[Category: Vetting, M W]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-	[[Category: New york structural genomics research consortium]]
	[[Category: Nysgrc]]		[[Category: Nysgrc]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
	[[Category: Psi-biology]]		[[Category: Psi-biology]]
-	[[Category: Structural genomic]]

OCA at 08:18, 5 June 2014

2014-06-05T08:18:57Z

←Older revision		Revision as of 08:18, 5 June 2014
Line 1:		Line 1:
-	~~[[Image:4f0r.jpg\|left\|200px]]~~	+	==Crystal structure of an adenosine deaminase homolog from Chromobacterium violaceum (target NYSGRC-019589) bound Zn and 5'-Methylthioadenosine (unproductive complex)==
-		+	<StructureSection load='4f0r' size='340' side='right' caption='[[4f0r]], [[Resolution\|resolution]] 1.80Å' scene=''>
-	~~<!--~~	+	== Structural highlights ==
-	~~The line below this paragraph, containing "STRUCTURE_4f0r", creates the "Structure Box" on the page.~~	+	<table><tr><td colspan='2'>[[4f0r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F0R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4F0R FirstGlance]. <br>
-	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MTA:5-DEOXY-5-METHYLTHIOADENOSINE'>MTA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~or leave the SCENE parameter empty for the default display.~~	+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CV_1032, mtaD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536 Chromobacterium violaceum])</td></tr>
-	~~-->~~	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4f0r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f0r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4f0r RCSB], [http://www.ebi.ac.uk/pdbsum/4f0r PDBsum]</span></td></tr>
-	~~{{STRUCTURE_4f0r\| PDB=4f0r \| SCENE= }}~~	+	<table>
-		+	__TOC__
-	===Crystal structure of an adenosine deaminase homolog from Chromobacterium violaceum (target NYSGRC-019589) bound Zn and 5'-Methylthioadenosine (unproductive complex)===	+	</StructureSection>
-		+
-		+
-	==~~About this Structure~~==	+
-	[[4f0r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F0R OCA].	+
	[[Category: Chromobacterium violaceum]]		[[Category: Chromobacterium violaceum]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]

OCA at 07:57, 6 June 2012

2012-06-06T07:57:13Z

←Older revision		Revision as of 07:57, 6 June 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:4f0r.jpg\|left\|200px]]

-	The ~~entry 4f0r~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_4f0r", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_4f0r\| PDB=4f0r \| SCENE= }}

-	~~Authors: Kim, J., Vetting, M.W., Sauder, J.M., Burley, S.K., Raushel, F.M., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium~~ (NYSGRC)	+	===Crystal structure of an adenosine deaminase homolog from Chromobacterium violaceum (target NYSGRC-019589) bound Zn and 5'-Methylthioadenosine (unproductive complex)===

-	~~Description: Crystal~~ structure ~~of an adenosine deaminase homolog~~ from Chromobacterium violaceum ~~(target~~ NYSGRC-~~019589) bound Zn and 5'-Methylthioadenosine (unproductive complex)~~	+
		+	==About this Structure==
		+	[[4f0r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F0R OCA].
		+	[[Category: Chromobacterium violaceum]]
		+	[[Category: Almo, S C.]]
		+	[[Category: Bonanno, J B.]]
		+	[[Category: Burley, S K.]]
		+	[[Category: Kim, J.]]
		+	[[Category: NYSGRC, New York Structural Genomics Research Consortium.]]
		+	[[Category: Raushel, F M.]]
		+	[[Category: Sauder, J M.]]
		+	[[Category: Vetting, M W.]]
		+	[[Category: Hydrolase]]
		+	[[Category: New york structural genomics research consortium]]
		+	[[Category: Nysgrc]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-biology]]
		+	[[Category: Structural genomic]]

OCA: Protected "4f0r" [edit=sysop:move=sysop]

2012-05-16T08:52:42Z

Protected "4f0r" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:52, 16 May 2012

OCA: New page: '''Unreleased structure''' The entry 4f0r is ON HOLD Authors: Kim, J., Vetting, M.W., Sauder, J.M., Burley, S.K., Raushel, F.M., Bonanno, J.B., Almo, S.C., New York Structural Genomics ...

2012-05-16T08:52:41Z

New page: '''Unreleased structure''' The entry 4f0r is ON HOLD Authors: Kim, J., Vetting, M.W., Sauder, J.M., Burley, S.K., Raushel, F.M., Bonanno, J.B., Almo, S.C., New York Structural Genomics ...

New page

'''Unreleased structure'''

The entry 4f0r is ON HOLD

Authors: Kim, J., Vetting, M.W., Sauder, J.M., Burley, S.K., Raushel, F.M., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

Description: Crystal structure of an adenosine deaminase homolog from Chromobacterium violaceum (target NYSGRC-019589) bound Zn and 5'-Methylthioadenosine (unproductive complex)