4ffj - Revision history

OCA at 11:16, 1 March 2024

2024-03-01T11:16:03Z

←Older revision		Revision as of 11:16, 1 March 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ffj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FFJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4FFJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ffj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FFJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4FFJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.95Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ffj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ffj OCA], [https://pdbe.org/4ffj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ffj RCSB], [https://www.ebi.ac.uk/pdbsum/4ffj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ffj ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ffj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ffj OCA], [https://pdbe.org/4ffj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ffj RCSB], [https://www.ebi.ac.uk/pdbsum/4ffj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ffj ProSAT]</span></td></tr>
	</table>		</table>

OCA at 04:53, 7 October 2022

2022-10-07T04:53:54Z

←Older revision		Revision as of 04:53, 7 October 2022
Line 1:		Line 1:

	==The crystal structure of spDHBPs from S.pneumoniae==		==The crystal structure of spDHBPs from S.pneumoniae==
-	<StructureSection load='4ffj' size='340' side='right' caption='[[4ffj]], [[Resolution\|resolution]] 1.95Å' scene=''>	+	<StructureSection load='4ffj' size='340' side='right'caption='[[4ffj]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ffj]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"diplococcus_pneumoniae"_(klein_1884)_weichselbaum_1886 "diplococcus~~ pneumoniae~~" (klein 1884) weichselbaum 1886~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FFJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4FFJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ffj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FFJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4FFJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ribAB, ribBA, SP_0176 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 "Diplococcus pneumoniae" (Klein 1884) Weichselbaum 1886])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ffj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ffj OCA], [https://pdbe.org/4ffj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ffj RCSB], [https://www.ebi.ac.uk/pdbsum/4ffj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ffj ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4ffj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ffj OCA], [~~http~~://pdbe.org/4ffj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4ffj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4ffj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4ffj ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~Q97SY7_STRPN Q97SY7_STRPN]~~] Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate ~~(By similarity)~~.[HAMAP-Rule:MF_01283~~][SAAS:SAAS017945_004_007867~~] Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate ~~(By similarity)~~.[HAMAP-Rule:MF_01283~~][SAAS:SAAS017945_004_011273~~]	+	[https://www.uniprot.org/uniprot/A0A0H2UN41_STRPN A0A0H2UN41_STRPN] Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.[ARBA:ARBA00002284][HAMAP-Rule:MF_01283] Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.[HAMAP-Rule:MF_01283]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Wang, D~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Barrel structure~~]]	+	[[Category: Streptococcus pneumoniae]]
-	[[Category: ~~Lyase~~]]	+	[[Category: Wang D]]

OCA at 21:31, 5 August 2016

2016-08-05T21:31:17Z

←Older revision		Revision as of 21:31, 5 August 2016
Line 1:		Line 1:
		+
	==The crystal structure of spDHBPs from S.pneumoniae==		==The crystal structure of spDHBPs from S.pneumoniae==
	<StructureSection load='4ffj' size='340' side='right' caption='[[4ffj]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='4ffj' size='340' side='right' caption='[[4ffj]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ffj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptococcus_pneumoniae Streptococcus~~ pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4FFJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ffj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"diplococcus_pneumoniae"_(klein_1884)_weichselbaum_1886 "diplococcus pneumoniae" (klein 1884) weichselbaum 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4FFJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ribAB, ribBA, SP_0176 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 ~~Streptococcus~~ pneumoniae])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ribAB, ribBA, SP_0176 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 "Diplococcus pneumoniae" (Klein 1884) Weichselbaum 1886])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ffj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ffj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ffj RCSB], [http://www.ebi.ac.uk/pdbsum/4ffj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ffj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ffj OCA], [http://pdbe.org/4ffj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ffj RCSB], [http://www.ebi.ac.uk/pdbsum/4ffj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ffj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 11:		Line 12:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Streptococcus pneumoniae]]
	[[Category: Wang, D]]		[[Category: Wang, D]]
	[[Category: Barrel structure]]		[[Category: Barrel structure]]
	[[Category: Lyase]]		[[Category: Lyase]]

OCA at 22:04, 25 December 2014

2014-12-25T22:04:26Z

←Older revision		Revision as of 22:04, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ffj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ffj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ffj RCSB], [http://www.ebi.ac.uk/pdbsum/4ffj PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ffj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ffj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ffj RCSB], [http://www.ebi.ac.uk/pdbsum/4ffj PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q97SY7_STRPN Q97SY7_STRPN]] Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate (By similarity).[HAMAP-Rule:MF_01283][SAAS:SAAS017945_004_007867] Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate (By similarity).[HAMAP-Rule:MF_01283][SAAS:SAAS017945_004_011273]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 11:15, 21 December 2014

2014-12-21T11:15:22Z

←Older revision		Revision as of 11:15, 21 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_4ffj\| PDB=4ffj \| SCENE= }}~~	+	==The crystal structure of spDHBPs from S.pneumoniae==
-	===The crystal structure of spDHBPs from S.pneumoniae===	+	<StructureSection load='4ffj' size='340' side='right' caption='[[4ffj]], [[Resolution\|resolution]] 1.95Å' scene=''>
-		+	== Structural highlights ==
-	==~~Function~~==	+	<table><tr><td colspan='2'>[[4ffj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4FFJ FirstGlance]. <br>
-	[[~~http://www.uniprot.org/uniprot/Q97SY7_STRPN Q97SY7_STRPN~~]] ~~Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3~~,~~4-dihydroxy-2-butanone 4-phosphate (By similarity).~~[~~HAMAP-Rule:MF_01283]~~[~~SAAS:SAAS017945_004_007867~~] ~~Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate (By similarity)~~.~~[HAMAP-Rule:MF_01283][SAAS:SAAS017945_004_011273]~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ribAB, ribBA, SP_0176 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 Streptococcus pneumoniae])</td></tr>
-	==~~About this Structure~~==	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ffj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ffj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ffj RCSB], [http://www.ebi.ac.uk/pdbsum/4ffj PDBsum]</span></td></tr>
-	[[4ffj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FFJ OCA].	+	</table>
		+	__TOC__
		+	</StructureSection>
	[[Category: Streptococcus pneumoniae]]		[[Category: Streptococcus pneumoniae]]
-	[[Category: Wang, D.]]	+	[[Category: Wang, D]]
	[[Category: Barrel structure]]		[[Category: Barrel structure]]
	[[Category: Lyase]]		[[Category: Lyase]]

OCA at 05:02, 18 July 2013

2013-07-18T05:02:35Z

←Older revision		Revision as of 05:02, 18 July 2013
Line 1:		Line 1:
-	~~'''Unreleased~~ structure~~'''~~	+	{{STRUCTURE_4ffj\| PDB=4ffj \| SCENE= }}
		+	===The crystal structure of spDHBPs from S.pneumoniae===

-	~~The entry 4ffj is ON HOLD~~ ~~until Paper Publication~~	+	==Function==
		+	[[http://www.uniprot.org/uniprot/Q97SY7_STRPN Q97SY7_STRPN]] Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate (By similarity).[HAMAP-Rule:MF_01283][SAAS:SAAS017945_004_007867] Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate (By similarity).[HAMAP-Rule:MF_01283][SAAS:SAAS017945_004_011273]

-	~~Authors~~: ~~Deqiang, W~~.	+	==About this Structure==
-		+	[[4ffj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FFJ OCA].
-	~~Description~~: ~~The crystal structure of spDHBPs from S~~.~~pneumoniae~~	+	[[Category: Streptococcus pneumoniae]]
		+	[[Category: Wang, D.]]
		+	[[Category: Barrel structure]]
		+	[[Category: Lyase]]

OCA at 04:41, 29 August 2012

2012-08-29T04:41:11Z

←Older revision		Revision as of 04:41, 29 August 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4ffj is ON HOLD	+	The entry 4ffj is ON HOLD until Paper Publication

	Authors: Deqiang, W.		Authors: Deqiang, W.

	Description: The crystal structure of spDHBPs from S.pneumoniae		Description: The crystal structure of spDHBPs from S.pneumoniae

OCA at 07:24, 20 June 2012

2012-06-20T07:24:58Z

←Older revision		Revision as of 07:24, 20 June 2012
Line 3:		Line 3:
	The entry 4ffj is ON HOLD		The entry 4ffj is ON HOLD

-	Authors: Deqiang ~~Wang~~	+	Authors: Deqiang, W.

	Description: The crystal structure of spDHBPs from S.pneumoniae		Description: The crystal structure of spDHBPs from S.pneumoniae

OCA: Protected "4ffj" [edit=sysop:move=sysop]

2012-06-13T05:50:49Z

Protected "4ffj" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:50, 13 June 2012

OCA: New page: '''Unreleased structure''' The entry 4ffj is ON HOLD Authors: Deqiang Wang Description: The crystal structure of spDHBPs from S.pneumoniae

2012-06-13T05:50:48Z

New page: '''Unreleased structure''' The entry 4ffj is ON HOLD Authors: Deqiang Wang Description: The crystal structure of spDHBPs from S.pneumoniae

New page

'''Unreleased structure'''

The entry 4ffj is ON HOLD

Authors: Deqiang Wang

Description: The crystal structure of spDHBPs from S.pneumoniae