4h19 - Revision history

OCA at 16:01, 14 March 2024

2024-03-14T16:01:42Z

←Older revision		Revision as of 16:01, 14 March 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4h19]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H19 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4H19 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4h19]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H19 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4H19 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0YR:(2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXIDANYL)PENTANAMIDE'>0YR</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0YR:(2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXIDANYL)PENTANAMIDE'>0YR</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4h19 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h19 OCA], [https://pdbe.org/4h19 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4h19 RCSB], [https://www.ebi.ac.uk/pdbsum/4h19 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4h19 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4h19 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h19 OCA], [https://pdbe.org/4h19 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4h19 RCSB], [https://www.ebi.ac.uk/pdbsum/4h19 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4h19 ProSAT]</span></td></tr>
	</table>		</table>
Line 11:		Line 12:

	==See Also==		==See Also==
		+	*[[Enolase 3D structures\|Enolase 3D structures]]
	*[[Mandelate racemase\|Mandelate racemase]]		*[[Mandelate racemase\|Mandelate racemase]]
	__TOC__		__TOC__

OCA at 07:52, 3 November 2022

2022-11-03T07:52:32Z

←Older revision		Revision as of 07:52, 3 November 2022
Line 1:		Line 1:

	==Crystal structure of an enolase (mandelate racemase subgroup, target EFI-502087) from agrobacterium tumefaciens, with bound Mg and d-ribonohydroxamate, ordered loop==		==Crystal structure of an enolase (mandelate racemase subgroup, target EFI-502087) from agrobacterium tumefaciens, with bound Mg and d-ribonohydroxamate, ordered loop==
-	<StructureSection load='4h19' size='340' side='right' caption='[[4h19]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='4h19' size='340' side='right'caption='[[4h19]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4h19]] is a 16 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Agrt5 Agrt5~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H19 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4H19 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4h19]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H19 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4H19 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0YR:(2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXIDANYL)PENTANAMIDE'>0YR</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0YR:(2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXIDANYL)PENTANAMIDE'>0YR</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Atu4120 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRT5])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4h19 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h19 OCA], [https://pdbe.org/4h19 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4h19 RCSB], [https://www.ebi.ac.uk/pdbsum/4h19 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4h19 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4h19 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h19 OCA], [~~http~~://pdbe.org/4h19 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4h19 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4h19 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4h19 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q7CU39_AGRFC Q7CU39_AGRFC]

	==See Also==		==See Also==
Line 13:		Line 14:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Agrt5~~]]	+	[[Category: Agrobacterium fabrum str. C58]]
-	[[Category: ~~Almo, S C~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Bouvier, J T~~]]	+	[[Category: Almo SC]]
-	[[Category: ~~EFI, Enzyme Function Initiative~~]]	+	[[Category: Bouvier JT]]
-	[[Category: Gerlt~~, J A~~]]	+	[[Category: Gerlt JA]]
-	[[Category: Imker~~, H J~~]]	+	[[Category: Imker HJ]]
-	[[Category: Morisco~~, L L~~]]	+	[[Category: Morisco LL]]
-	[[Category: Sojitra, S]]	+	[[Category: Sojitra S]]
-	[[Category: Vetting~~, M W~~]]	+	[[Category: Vetting MW]]
-	[[Category: Wasserman~~, S R]]~~	+	[[Category: Wasserman SR]]
-	~~[[Category: Efi]]~~	+
-	~~[[Category: Enolase]]~~	+
-	~~[[Category: Enzyme function initiative]]~~	+
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: Mandelate racemase subgroup]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 19:24, 11 August 2016

2016-08-11T19:24:07Z

←Older revision		Revision as of 19:24, 11 August 2016
Line 1:		Line 1:
-	[[Image:4h19.jpg\|left\|200px]]

-	~~{{STRUCTURE_4h19~~\| ~~PDB~~=4h19 \| ~~SCENE~~= }}	+	==Crystal structure of an enolase (mandelate racemase subgroup, target EFI-502087) from agrobacterium tumefaciens, with bound Mg and d-ribonohydroxamate, ordered loop==
		+	<StructureSection load='4h19' size='340' side='right' caption='[[4h19]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4h19]] is a 16 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrt5 Agrt5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H19 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4H19 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0YR:(2R,3R,4R)-N,2,3,4,5-PENTAKIS(OXIDANYL)PENTANAMIDE'>0YR</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Atu4120 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRT5])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4h19 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h19 OCA], [http://pdbe.org/4h19 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4h19 RCSB], [http://www.ebi.ac.uk/pdbsum/4h19 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4h19 ProSAT]</span></td></tr>
		+	</table>

-	==~~=Crystal structure of an enolase (mandelate racemase subgroup, target EFI-502087) from agrobacterium tumefaciens, with bound Mg and d-ribonohydroxamate, ordered loop===~~	+	==See Also==
-		+	*[[Mandelate racemase\|Mandelate racemase]]
-		+	__TOC__
-	~~==About this Structure~~==	+	</StructureSection>
-	[[~~4h19~~]] ~~is a 16 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Agrobacterium_fabrum_str._c58 Agrobacterium fabrum str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H19 OCA].~~	+	[[Category: Agrt5]]
-	[[Category: ~~Agrobacterium fabrum str. c58~~]]	+	[[Category: Almo, S C]]
-	[[Category: Almo, S C.]]	+	[[Category: Bouvier, J T]]
-	[[Category: Bouvier, J T.]]	+	[[Category: EFI, Enzyme Function Initiative]]
-	[[Category: EFI, Enzyme Function Initiative.]]	+	[[Category: Gerlt, J A]]
-	[[Category: Gerlt, J A.]]	+	[[Category: Imker, H J]]
-	[[Category: Imker, H J.]]	+	[[Category: Morisco, L L]]
-	[[Category: Morisco, L L.]]	+	[[Category: Sojitra, S]]
-	[[Category: Sojitra, S.]]	+	[[Category: Vetting, M W]]
-	[[Category: Vetting, M W.]]	+	[[Category: Wasserman, S R]]
-	[[Category: Wasserman, S R.]]	+
	[[Category: Efi]]		[[Category: Efi]]
	[[Category: Enolase]]		[[Category: Enolase]]

OCA at 09:26, 31 October 2012

2012-10-31T09:26:39Z

←Older revision		Revision as of 09:26, 31 October 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:4h19.jpg\|left\|200px]]

-	~~The entry~~ 4h19 ~~is ON HOLD~~	+	{{STRUCTURE_4h19\| PDB=4h19 \| SCENE= }}

-	~~Authors: Vetting~~, ~~M.W.~~, ~~Bouvier~~, ~~J.T., Morisco, L.L., Wasserman, S.R., Sojitra, S., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)~~	+	===Crystal structure of an enolase (mandelate racemase subgroup, target EFI-502087) from agrobacterium tumefaciens, with bound Mg and d-ribonohydroxamate, ordered loop===

-	~~Description: Crystal~~ structure ~~of an enolase (mandelate racemase subgroup~~, ~~target~~ EFI~~-502087) from agrobacterium tumefaciens~~, ~~with bound Mg and d-ribonohydroxamate~~, ~~ordered loop~~	+
		+	==About this Structure==
		+	[[4h19]] is a 16 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._c58 Agrobacterium fabrum str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H19 OCA].
		+	[[Category: Agrobacterium fabrum str. c58]]
		+	[[Category: Almo, S C.]]
		+	[[Category: Bouvier, J T.]]
		+	[[Category: EFI, Enzyme Function Initiative.]]
		+	[[Category: Gerlt, J A.]]
		+	[[Category: Imker, H J.]]
		+	[[Category: Morisco, L L.]]
		+	[[Category: Sojitra, S.]]
		+	[[Category: Vetting, M W.]]
		+	[[Category: Wasserman, S R.]]
		+	[[Category: Efi]]
		+	[[Category: Enolase]]
		+	[[Category: Enzyme function initiative]]
		+	[[Category: Lyase]]
		+	[[Category: Mandelate racemase subgroup]]
		+	[[Category: Structural genomic]]

OCA at 20:10, 26 September 2012

2012-09-26T20:10:33Z

←Older revision		Revision as of 20:10, 26 September 2012
Line 5:		Line 5:
	Authors: Vetting, M.W., Bouvier, J.T., Morisco, L.L., Wasserman, S.R., Sojitra, S., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)		Authors: Vetting, M.W., Bouvier, J.T., Morisco, L.L., Wasserman, S.R., Sojitra, S., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

-	Description: ~~CRYSTAL STRUCTURE OF AN ENOLASE~~ (~~MANDELATE RACEMASE SUBGROUP~~, ~~TARGET~~ EFI-502087) ~~FROM AGROBACTERIUM TUMEFACIENS~~, ~~WITH BOUND MG~~ and D-~~RIBONOHYDROXAMATE~~, ~~ORDERED LOOP~~	+	Description: Crystal structure of an enolase (mandelate racemase subgroup, target EFI-502087) from agrobacterium tumefaciens, with bound Mg and d-ribonohydroxamate, ordered loop

OCA: Protected "4h19" [edit=sysop:move=sysop]

2012-09-19T06:57:15Z

Protected "4h19" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:57, 19 September 2012

OCA: New page: '''Unreleased structure''' The entry 4h19 is ON HOLD Authors: Vetting, M.W., Bouvier, J.T., Morisco, L.L., Wasserman, S.R., Sojitra, S., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Fun...

2012-09-19T06:57:14Z

New page: '''Unreleased structure''' The entry 4h19 is ON HOLD Authors: Vetting, M.W., Bouvier, J.T., Morisco, L.L., Wasserman, S.R., Sojitra, S., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Fun...

New page

'''Unreleased structure'''

The entry 4h19 is ON HOLD

Authors: Vetting, M.W., Bouvier, J.T., Morisco, L.L., Wasserman, S.R., Sojitra, S., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

Description: CRYSTAL STRUCTURE OF AN ENOLASE (MANDELATE RACEMASE SUBGROUP, TARGET EFI-502087) FROM AGROBACTERIUM TUMEFACIENS, WITH BOUND MG and D-RIBONOHYDROXAMATE, ORDERED LOOP