4hhh - Revision history

OCA at 08:17, 3 November 2022

2022-11-03T08:17:35Z

←Older revision		Revision as of 08:17, 3 November 2022
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	<StructureSection load='4hhh' size='340' side='right'caption='[[4hhh]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='4hhh' size='340' side='right'caption='[[4hhh]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4hhh]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HHH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4HHH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4hhh]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HHH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4HHH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RUB:RIBULOSE-1,5-DIPHOSPHATE'>RUB</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RUB:RIBULOSE-1,5-DIPHOSPHATE'>RUB</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4hhh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hhh OCA], [https://pdbe.org/4hhh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4hhh RCSB], [https://www.ebi.ac.uk/pdbsum/4hhh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4hhh ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4hhh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hhh OCA], [~~http~~://pdbe.org/4hhh PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4hhh RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4hhh PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4hhh ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/RBL_PEA RBL_PEA]] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.[HAMAP-Rule:MF_01338]	+	[https://www.uniprot.org/uniprot/RBL_PEA RBL_PEA] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.[HAMAP-Rule:MF_01338]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 20:

	==See Also==		==See Also==
-	*[[RuBisCO\|RuBisCO]]	+	*[[RuBisCO 3D structures\|RuBisCO 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 28:		Line 27:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Pisum sativum]]		[[Category: Pisum sativum]]
-	~~[[Category: Ribulose-bisphosphate carboxylase]]~~	+	[[Category: Didychuk AL]]
-	[[Category: Didychuk~~, A L~~]]	+	[[Category: Loewen MC]]
-	[[Category: Loewen~~, M C~~]]	+	[[Category: Loewen PC]]
-	[[Category: Loewen~~, P C~~]]	+	[[Category: Switala J]]
-	[[Category: Switala, J]]	+
-	~~[[Category: 5-bisphosphate]]~~	+
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: Ribulose-1]]~~	+
-	~~[[Category: Rubisco~~]]	+

OCA at 07:27, 27 March 2019

2019-03-27T07:27:00Z

←Older revision		Revision as of 07:27, 27 March 2019
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	==Structure of Pisum sativum Rubisco==		==Structure of Pisum sativum Rubisco==
-	<StructureSection load='4hhh' size='340' side='right' caption='[[4hhh]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='4hhh' size='340' side='right'caption='[[4hhh]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4hhh]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HHH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HHH FirstGlance]. <br>		<table><tr><td colspan='2'>[[4hhh]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HHH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HHH FirstGlance]. <br>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Pisum sativum]]		[[Category: Pisum sativum]]
	[[Category: Ribulose-bisphosphate carboxylase]]		[[Category: Ribulose-bisphosphate carboxylase]]

OCA at 20:11, 4 August 2016

2016-08-04T20:11:58Z

←Older revision		Revision as of 20:11, 4 August 2016
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		+
	==Structure of Pisum sativum Rubisco==		==Structure of Pisum sativum Rubisco==
	<StructureSection load='4hhh' size='340' side='right' caption='[[4hhh]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='4hhh' size='340' side='right' caption='[[4hhh]], [[Resolution\|resolution]] 2.20Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RUB:RIBULOSE-1,5-DIPHOSPHATE'>RUB</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RUB:RIBULOSE-1,5-DIPHOSPHATE'>RUB</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hhh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hhh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4hhh RCSB], [http://www.ebi.ac.uk/pdbsum/4hhh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hhh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hhh OCA], [http://pdbe.org/4hhh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4hhh RCSB], [http://www.ebi.ac.uk/pdbsum/4hhh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4hhh ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4hhh" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 12:44, 25 December 2014

2014-12-25T12:44:07Z

←Older revision		Revision as of 12:44, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hhh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hhh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4hhh RCSB], [http://www.ebi.ac.uk/pdbsum/4hhh PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hhh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hhh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4hhh RCSB], [http://www.ebi.ac.uk/pdbsum/4hhh PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RBL_PEA RBL_PEA]] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.[HAMAP-Rule:MF_01338]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 09:19, 10 December 2014

2014-12-10T09:19:04Z

←Older revision		Revision as of 09:19, 10 December 2014
Line 1:		Line 1:
-	[[~~Image:~~4hhh.~~png~~\|~~left\|200px~~]]	+	==Structure of Pisum sativum Rubisco==
		+	<StructureSection load='4hhh' size='340' side='right' caption='[[4hhh]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4hhh]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HHH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HHH FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RUB:RIBULOSE-1,5-DIPHOSPHATE'>RUB</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hhh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hhh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4hhh RCSB], [http://www.ebi.ac.uk/pdbsum/4hhh PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The first structure of a ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from a pulse crop is reported. Rubisco was purified from Pisum sativum (garden pea) and diffraction-quality crystals were obtained by hanging-drop vapour diffusion in the presence of the substrate ribulose 1,5-bisphosphate. X-ray diffraction data were recorded to 2.20 A resolution from a single crystal at the Canadian Light Source. The overall quaternary structure of non-activated P. sativum Rubisco highlights the conservation of the form I Rubisco hexadecameric complex. The electron density places the substrate in the active site at the interface of the large-subunit dimers. Lys201 in the active site is not carbamylated as expected for this non-activated structure. Some heterogeneity in the small-subunit sequence is noted, as well as possible variations in the conformation and contacts of ribulose 1,5-bisphosphate in the large-subunit active sites. Overall, the active-site conformation most closely correlates with the `closed' conformation observed in other substrate/inhibitor-bound Rubisco structures.

-	~~{{STRUCTURE_4hhh\| PDB=4hhh \| SCENE= }}~~	+	Structure of Pisum sativum Rubisco with bound ribulose 1,5-bisphosphate.,Loewen PC, Didychuk AL, Switala J, Perez-Luque R, Fita I, Loewen MC Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jan 1;69(Pt 1):10-4. doi: , 10.1107/S1744309112047549. Epub 2012 Dec 25. PMID:23295478<ref>PMID:23295478</ref>

-	~~===Structure~~ of ~~Pisum sativum Rubisco===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_23295478}}~~	+	==See Also==
-		+	*[[RuBisCO\|RuBisCO]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~4hhh~~]] ~~is a 8 chain structure with sequence from [http:~~//~~en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HHH OCA].~~	+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Pisum sativum]]		[[Category: Pisum sativum]]
	[[Category: Ribulose-bisphosphate carboxylase]]		[[Category: Ribulose-bisphosphate carboxylase]]
-	[[Category: Didychuk, A L.]]	+	[[Category: Didychuk, A L]]
-	[[Category: Loewen, M C.]]	+	[[Category: Loewen, M C]]
-	[[Category: Loewen, P C.]]	+	[[Category: Loewen, P C]]
-	[[Category: Switala, J.]]	+	[[Category: Switala, J]]
	[[Category: 5-bisphosphate]]		[[Category: 5-bisphosphate]]
	[[Category: Lyase]]		[[Category: Lyase]]
	[[Category: Ribulose-1]]		[[Category: Ribulose-1]]
	[[Category: Rubisco]]		[[Category: Rubisco]]

OCA at 11:36, 23 January 2013

2013-01-23T11:36:56Z

←Older revision		Revision as of 11:36, 23 January 2013
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	===Structure of Pisum sativum Rubisco===		===Structure of Pisum sativum Rubisco===

		+	{{ABSTRACT_PUBMED_23295478}}

	==About this Structure==		==About this Structure==

OCA at 08:32, 9 January 2013

2013-01-09T08:32:23Z

←Older revision		Revision as of 08:32, 9 January 2013
Line 1:		Line 1:
-	[[Image:4hhh.~~jpg~~\|left\|200px]]	+	[[Image:4hhh.png\|left\|200px]]

	{{STRUCTURE_4hhh\| PDB=4hhh \| SCENE= }}		{{STRUCTURE_4hhh\| PDB=4hhh \| SCENE= }}

OCA at 09:28, 31 October 2012

2012-10-31T09:28:09Z

←Older revision		Revision as of 09:28, 31 October 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:4hhh.jpg\|left\|200px]]

-	~~The entry~~ 4hhh ~~is ON HOLD~~	+	{{STRUCTURE_4hhh\| PDB=4hhh \| SCENE= }}

-	~~Authors: Loewen, P.C., Didychuk, A.L., Switala, J., Loewen, M.C.~~	+	===Structure of Pisum sativum Rubisco===

-	~~Description:~~ Structure of Pisum sativum Rubisco	+
		+	==About this Structure==
		+	[[4hhh]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HHH OCA].
		+	[[Category: Pisum sativum]]
		+	[[Category: Ribulose-bisphosphate carboxylase]]
		+	[[Category: Didychuk, A L.]]
		+	[[Category: Loewen, M C.]]
		+	[[Category: Loewen, P C.]]
		+	[[Category: Switala, J.]]
		+	[[Category: 5-bisphosphate]]
		+	[[Category: Lyase]]
		+	[[Category: Ribulose-1]]
		+	[[Category: Rubisco]]

OCA at 07:10, 24 October 2012

2012-10-24T07:10:47Z

←Older revision		Revision as of 07:10, 24 October 2012
Line 3:		Line 3:
	The entry 4hhh is ON HOLD		The entry 4hhh is ON HOLD

-	Authors: Loewen, P.C., Didychuk, A.L., Switala, J.	+	Authors: Loewen, P.C., Didychuk, A.L., Switala, J., Loewen, M.C.

	Description: Structure of Pisum sativum Rubisco		Description: Structure of Pisum sativum Rubisco

OCA: Protected "4hhh" [edit=sysop:move=sysop]

2012-10-17T06:37:54Z

Protected "4hhh" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:37, 17 October 2012