4kpi - Revision history

OCA at 16:03, 20 September 2023

2023-09-20T16:03:23Z

←Older revision		Revision as of 16:03, 20 September 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4kpi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KPI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KPI FirstGlance]. <br>		<table><tr><td colspan='2'>[[4kpi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KPI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KPI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NRQ:{(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO)PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>NRQ</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.58Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NRQ:{(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO)PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>NRQ</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4kpi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kpi OCA], [https://pdbe.org/4kpi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4kpi RCSB], [https://www.ebi.ac.uk/pdbsum/4kpi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4kpi ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4kpi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kpi OCA], [https://pdbe.org/4kpi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4kpi RCSB], [https://www.ebi.ac.uk/pdbsum/4kpi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4kpi ProSAT]</span></td></tr>
	</table>		</table>

OCA at 09:05, 7 December 2022

2022-12-07T09:05:16Z

←Older revision		Revision as of 09:05, 7 December 2022
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	<StructureSection load='4kpi' size='340' side='right'caption='[[4kpi]], [[Resolution\|resolution]] 1.58Å' scene=''>		<StructureSection load='4kpi' size='340' side='right'caption='[[4kpi]], [[Resolution\|resolution]] 1.58Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4kpi]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Synthetic_construct_sequences~~ Synthetic construct ~~sequences~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KPI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4KPI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4kpi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KPI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KPI FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=NRQ:{(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO)PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>NRQ</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NRQ:{(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO)PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>NRQ</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3u8a\|3u8a]], [[3u8c\|3u8c]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4kpi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kpi OCA], [https://pdbe.org/4kpi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4kpi RCSB], [https://www.ebi.ac.uk/pdbsum/4kpi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4kpi ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4kpi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kpi OCA], [~~http~~://pdbe.org/4kpi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4kpi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4kpi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4kpi ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/D0VX33_ENTQU D0VX33_ENTQU]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Synthetic construct ~~sequences~~]]	+	[[Category: Synthetic construct]]
-	[[Category: Pletnev, S]]	+	[[Category: Pletnev S]]
-	~~[[Category: Beta-barrel]]~~	+
-	~~[[Category: Fluorescent protein]]~~	+
-	~~[[Category: Order-disorder structure]]~~	+
-	~~[[Category: Red fluorescent protein]]~~	+
-	~~[[Category: Reversibly photoswitchable fluorescent protein~~]]	+

OCA at 04:55, 13 February 2020

2020-02-13T04:55:37Z

←Older revision		Revision as of 04:55, 13 February 2020
Line 1:		Line 1:

	==Rotational order-disorder structure of reversibly photoswitchable red fluorescent protein rsTagRFP==		==Rotational order-disorder structure of reversibly photoswitchable red fluorescent protein rsTagRFP==
-	<StructureSection load='4kpi' size='340' side='right' caption='[[4kpi]], [[Resolution\|resolution]] 1.58Å' scene=''>	+	<StructureSection load='4kpi' size='340' side='right'caption='[[4kpi]], [[Resolution\|resolution]] 1.58Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4kpi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synthetic_construct_sequences Synthetic construct sequences]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KPI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4KPI FirstGlance]. <br>		<table><tr><td colspan='2'>[[4kpi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synthetic_construct_sequences Synthetic construct sequences]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KPI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4KPI FirstGlance]. <br>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Synthetic construct sequences]]		[[Category: Synthetic construct sequences]]
	[[Category: Pletnev, S]]		[[Category: Pletnev, S]]

OCA at 07:12, 11 August 2016

2016-08-11T07:12:22Z

←Older revision		Revision as of 07:12, 11 August 2016
Line 1:		Line 1:
		+
	==Rotational order-disorder structure of reversibly photoswitchable red fluorescent protein rsTagRFP==		==Rotational order-disorder structure of reversibly photoswitchable red fluorescent protein rsTagRFP==
	<StructureSection load='4kpi' size='340' side='right' caption='[[4kpi]], [[Resolution\|resolution]] 1.58Å' scene=''>		<StructureSection load='4kpi' size='340' side='right' caption='[[4kpi]], [[Resolution\|resolution]] 1.58Å' scene=''>
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	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NRQ:{(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO)PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>NRQ</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NRQ:{(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO)PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>NRQ</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3u8a\|3u8a]], [[3u8c\|3u8c]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3u8a\|3u8a]], [[3u8c\|3u8c]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4kpi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kpi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4kpi RCSB], [http://www.ebi.ac.uk/pdbsum/4kpi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4kpi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kpi OCA], [http://pdbe.org/4kpi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4kpi RCSB], [http://www.ebi.ac.uk/pdbsum/4kpi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4kpi ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4kpi" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:11, 4 January 2015

2015-01-04T12:11:44Z

←Older revision		Revision as of 12:11, 4 January 2015
Line 1:		Line 1:
-	~~{{STRUCTURE_4kpi\| PDB=4kpi \| SCENE= }}~~	+	==Rotational order-disorder structure of reversibly photoswitchable red fluorescent protein rsTagRFP==
-	===Rotational order-disorder structure of reversibly photoswitchable red fluorescent protein rsTagRFP===	+	<StructureSection load='4kpi' size='340' side='right' caption='[[4kpi]], [[Resolution\|resolution]] 1.58Å' scene=''>
-	{~~{ABSTRACT_PUBMED_24419376}~~}	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4kpi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synthetic_construct_sequences Synthetic construct sequences]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KPI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4KPI FirstGlance]. <br>
		+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NRQ:{(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO)PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>NRQ</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3u8a\|3u8a]], [[3u8c\|3u8c]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4kpi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kpi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4kpi RCSB], [http://www.ebi.ac.uk/pdbsum/4kpi PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The rotational order-disorder (OD) structure of the reversibly photoswitchable fluorescent protein rsTagRFP is discussed in detail. The structure is composed of tetramers of 222 symmetry incorporated into the lattice in two different orientations rotated 90 degrees with respect to each other around the crystal c axis and with tetramer axes coinciding with the crystallographic twofold axes. The random distribution of alternatively oriented tetramers in the crystal creates the rotational OD structure with statistically averaged I422 symmetry. Despite order-disorder pathology, the structure of rsTagRFP has electron-density maps of good quality for both non-overlapping and overlapping parts of the model. The crystal contacts, crystal internal architecture and a possible mechanism of rotational OD crystal formation are discussed.

-	~~==About this Structure==~~	+	The rotational order-disorder structure of the reversibly photoswitchable red fluorescent protein rsTagRFP.,Pletnev S, Subach FV, Verkhusha VV, Dauter Z Acta Crystallogr D Biol Crystallogr. 2014 Jan;70(Pt 1):31-9. doi:, 10.1107/S1399004713024644. Epub 2013 Dec 24. PMID:24419376<ref>PMID:24419376</ref>
-	~~[[4kpi]] is a 1 chain~~ structure. ~~Full crystallographic information is available from [http~~:~~//oca~~.~~weizmann.ac~~.il/~~oca-bin/ocashort?id=4KPI OCA]~~.	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:024419376</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
-	[[Category: Pletnev, S.]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Synthetic construct sequences]]
		+	[[Category: Pletnev, S]]
	[[Category: Beta-barrel]]		[[Category: Beta-barrel]]
	[[Category: Fluorescent protein]]		[[Category: Fluorescent protein]]

OCA at 17:52, 3 March 2014

2014-03-03T17:52:14Z

←Older revision		Revision as of 17:52, 3 March 2014
Line 1:		Line 1:
-	~~'''Unreleased~~ structure~~'''~~	+	{{STRUCTURE_4kpi\| PDB=4kpi \| SCENE= }}
		+	===Rotational order-disorder structure of reversibly photoswitchable red fluorescent protein rsTagRFP===
		+	{{ABSTRACT_PUBMED_24419376}}

-	~~The entry~~ 4kpi is ~~ON HOLD until Paper Publication~~	+	==About this Structure==
		+	[[4kpi]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KPI OCA].

-	~~Authors~~: Pletnev, S.	+	==Reference==
-		+	<ref group="xtra">PMID:024419376</ref><references group="xtra"/><references/>
-	~~Description~~: ~~Rotational order~~-disorder structure ~~of reversibly~~ photoswitchable ~~red~~ fluorescent protein ~~rsTagRFP~~	+	[[Category: Pletnev, S.]]
		+	[[Category: Beta-barrel]]
		+	[[Category: Fluorescent protein]]
		+	[[Category: Order-disorder structure]]
		+	[[Category: Red fluorescent protein]]
		+	[[Category: Reversibly photoswitchable fluorescent protein]]

OCA: Protected "4kpi" [edit=sysop:move=sysop]

2013-06-19T11:52:16Z

Protected "4kpi" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:52, 19 June 2013

OCA: New page: '''Unreleased structure''' The entry 4kpi is ON HOLD until Paper Publication Authors: Pletnev, S. Description: Rotational order-disorder structure of reversibly photoswitchable red flu...

2013-06-19T11:52:15Z

New page: '''Unreleased structure''' The entry 4kpi is ON HOLD until Paper Publication Authors: Pletnev, S. Description: Rotational order-disorder structure of reversibly photoswitchable red flu...

New page

'''Unreleased structure'''

The entry 4kpi is ON HOLD until Paper Publication

Authors: Pletnev, S.

Description: Rotational order-disorder structure of reversibly photoswitchable red fluorescent protein rsTagRFP