4lox - Revision history

OCA at 16:22, 20 September 2023

2023-09-20T16:22:44Z

←Older revision		Revision as of 16:22, 20 September 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4lox]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Sordaria_macrospora_k-hell Sordaria macrospora k-hell]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LOX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4LOX FirstGlance]. <br>		<table><tr><td colspan='2'>[[4lox]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Sordaria_macrospora_k-hell Sordaria macrospora k-hell]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LOX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4LOX FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.98Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4lox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lox OCA], [https://pdbe.org/4lox PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4lox RCSB], [https://www.ebi.ac.uk/pdbsum/4lox PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4lox ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4lox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lox OCA], [https://pdbe.org/4lox PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4lox RCSB], [https://www.ebi.ac.uk/pdbsum/4lox PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4lox ProSAT]</span></td></tr>
	</table>		</table>

OCA at 11:16, 14 December 2022

2022-12-14T11:16:44Z

←Older revision		Revision as of 11:16, 14 December 2022
Line 3:		Line 3:
	<StructureSection load='4lox' size='340' side='right'caption='[[4lox]], [[Resolution\|resolution]] 1.98Å' scene=''>		<StructureSection load='4lox' size='340' side='right'caption='[[4lox]], [[Resolution\|resolution]] 1.98Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4lox]] is a 5 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Sormk Sormk~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LOX OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4LOX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4lox]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Sordaria_macrospora_k-hell Sordaria macrospora k-hell]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LOX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4LOX FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4lq0\|4lq0]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4lox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lox OCA], [https://pdbe.org/4lox PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4lox RCSB], [https://www.ebi.ac.uk/pdbsum/4lox PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4lox ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cytochrome c oxidase subunit 1, mitochondrial Introne encoded, SMAC_12671 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=771870 SORMK])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4lox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lox OCA], [~~http~~://pdbe.org/4lox PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4lox RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4lox PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4lox ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/F7WD42_SORMK F7WD42_SORMK]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Sormk~~]]	+	[[Category: Sordaria macrospora k-hell]]
-	[[Category: Chik, J]]	+	[[Category: Chik J]]
-	[[Category: Shen, B]]	+	[[Category: Shen B]]
-	[[Category: Stoddard, B]]	+	[[Category: Stoddard B]]
-	~~[[Category: Dna binding]]~~	+
-	~~[[Category: Endonuclease]]~~	+
-	~~[[Category: Homing endonuclease]]~~	+
-	~~[[Category: Hydrolase-dna complex]]~~	+
-	~~[[Category: Lhe]]~~	+
-	~~[[Category: Mitochrodrial]]~~	+
-	~~[[Category: Protein-dna complex~~]]	+

OCA at 09:37, 3 April 2019

2019-04-03T09:37:02Z

←Older revision		Revision as of 09:37, 3 April 2019
Line 1:		Line 1:

	==Crystal structure of the I-SmaMI LAGLIDADG homing endonuclease bound to cleaved DNA==		==Crystal structure of the I-SmaMI LAGLIDADG homing endonuclease bound to cleaved DNA==
-	<StructureSection load='4lox' size='340' side='right' caption='[[4lox]], [[Resolution\|resolution]] 1.98Å' scene=''>	+	<StructureSection load='4lox' size='340' side='right'caption='[[4lox]], [[Resolution\|resolution]] 1.98Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4lox]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LOX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4LOX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4lox]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Sormk Sormk]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LOX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4LOX FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4lq0\|4lq0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4lq0\|4lq0]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cytochrome c oxidase subunit 1, mitochondrial Introne encoded, SMAC_12671 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=771870 SORMK])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4lox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lox OCA], [http://pdbe.org/4lox PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4lox RCSB], [http://www.ebi.ac.uk/pdbsum/4lox PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4lox ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4lox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lox OCA], [http://pdbe.org/4lox PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4lox RCSB], [http://www.ebi.ac.uk/pdbsum/4lox PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4lox ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Sormk]]
	[[Category: Chik, J]]		[[Category: Chik, J]]
	[[Category: Shen, B]]		[[Category: Shen, B]]

OCA at 12:14, 11 August 2016

2016-08-11T12:14:43Z

←Older revision		Revision as of 12:14, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of the I-SmaMI LAGLIDADG homing endonuclease bound to cleaved DNA==		==Crystal structure of the I-SmaMI LAGLIDADG homing endonuclease bound to cleaved DNA==
	<StructureSection load='4lox' size='340' side='right' caption='[[4lox]], [[Resolution\|resolution]] 1.98Å' scene=''>		<StructureSection load='4lox' size='340' side='right' caption='[[4lox]], [[Resolution\|resolution]] 1.98Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4lq0\|4lq0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4lq0\|4lq0]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4lox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lox OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4lox RCSB], [http://www.ebi.ac.uk/pdbsum/4lox PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4lox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lox OCA], [http://pdbe.org/4lox PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4lox RCSB], [http://www.ebi.ac.uk/pdbsum/4lox PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4lox ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__

OCA at 09:45, 20 January 2015

2015-01-20T09:45:06Z

←Older revision		Revision as of 09:45, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4lox]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LOX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4LOX FirstGlance]. <br>		<table><tr><td colspan='2'>[[4lox]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LOX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4LOX FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4lq0\|4lq0]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4lq0\|4lq0]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4lox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lox OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4lox RCSB], [http://www.ebi.ac.uk/pdbsum/4lox PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4lox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lox OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4lox RCSB], [http://www.ebi.ac.uk/pdbsum/4lox PDBsum]</span></td></tr>
-	<table>	+	</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Chik, J.]]	+	[[Category: Chik, J]]
-	[[Category: Shen, B.]]	+	[[Category: Shen, B]]
-	[[Category: Stoddard, B.]]	+	[[Category: Stoddard, B]]
	[[Category: Dna binding]]		[[Category: Dna binding]]
	[[Category: Endonuclease]]		[[Category: Endonuclease]]

OCA at 10:40, 24 September 2014

2014-09-24T10:40:25Z

←Older revision		Revision as of 10:40, 24 September 2014
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Crystal structure of the I-SmaMI LAGLIDADG homing endonuclease bound to cleaved DNA==
-		+	<StructureSection load='4lox' size='340' side='right' caption='[[4lox]], [[Resolution\|resolution]] 1.98Å' scene=''>
-	~~The entry~~ 4lox is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4lox]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LOX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4LOX FirstGlance]. <br>
-	~~Authors~~: Chik, J., Shen, B., Stoddard, B.	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4lq0\|4lq0]]</td></tr>
-	~~Description~~: ~~Crystal structure of the I-SmaMI LAGLIDADG homing~~ endonuclease ~~bound to cleaved DNA~~	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4lox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lox OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4lox RCSB], [http://www.ebi.ac.uk/pdbsum/4lox PDBsum]</span></td></tr>
		+	<table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Chik, J.]]
		+	[[Category: Shen, B.]]
		+	[[Category: Stoddard, B.]]
		+	[[Category: Dna binding]]
		+	[[Category: Endonuclease]]
		+	[[Category: Homing endonuclease]]
		+	[[Category: Hydrolase-dna complex]]
		+	[[Category: Lhe]]
		+	[[Category: Mitochrodrial]]
		+	[[Category: Protein-dna complex]]

OCA at 12:47, 20 November 2013

2013-11-20T12:47:09Z

←Older revision		Revision as of 12:47, 20 November 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4lox is ON HOLD	+	The entry 4lox is ON HOLD until Paper Publication

	Authors: Chik, J., Shen, B., Stoddard, B.		Authors: Chik, J., Shen, B., Stoddard, B.

	Description: Crystal structure of the I-SmaMI LAGLIDADG homing endonuclease bound to cleaved DNA		Description: Crystal structure of the I-SmaMI LAGLIDADG homing endonuclease bound to cleaved DNA

OCA at 09:51, 4 September 2013

2013-09-04T09:51:55Z

←Older revision		Revision as of 09:51, 4 September 2013
Line 5:		Line 5:
	Authors: Chik, J., Shen, B., Stoddard, B.		Authors: Chik, J., Shen, B., Stoddard, B.

-	Description: Crystal structure of a LAGLIDADG homing endonuclease ~~(LHE) with cleavaged products.~~	+	Description: Crystal structure of the I-SmaMI LAGLIDADG homing endonuclease bound to cleaved DNA

OCA at 07:51, 21 August 2013

2013-08-21T07:51:27Z

←Older revision		Revision as of 07:51, 21 August 2013
Line 3:		Line 3:
	The entry 4lox is ON HOLD		The entry 4lox is ON HOLD

-	Authors: Chik, ~~Jannifer~~, Shen, ~~Betty~~, Stoddard, ~~Barry~~	+	Authors: Chik, J., Shen, B., Stoddard, B.

	Description: Crystal structure of a LAGLIDADG homing endonuclease (LHE) with cleavaged products.		Description: Crystal structure of a LAGLIDADG homing endonuclease (LHE) with cleavaged products.

OCA: Protected "4lox" [edit=sysop:move=sysop]

2013-07-24T12:30:22Z

Protected "4lox" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:30, 24 July 2013