4ndt - Revision history

OCA at 16:55, 20 September 2023

2023-09-20T16:55:04Z

←Older revision		Revision as of 16:55, 20 September 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ndt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lyophyllum_decastes Lyophyllum decastes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NDT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NDT FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ndt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lyophyllum_decastes Lyophyllum decastes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NDT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NDT FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.03Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ndt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ndt OCA], [https://pdbe.org/4ndt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ndt RCSB], [https://www.ebi.ac.uk/pdbsum/4ndt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ndt ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ndt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ndt OCA], [https://pdbe.org/4ndt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ndt RCSB], [https://www.ebi.ac.uk/pdbsum/4ndt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ndt ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:24, 11 January 2023

2023-01-11T08:24:02Z

←Older revision		Revision as of 08:24, 11 January 2023
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	<StructureSection load='4ndt' size='340' side='right'caption='[[4ndt]], [[Resolution\|resolution]] 1.03Å' scene=''>		<StructureSection load='4ndt' size='340' side='right'caption='[[4ndt]], [[Resolution\|resolution]] 1.03Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ndt]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Lyophyllum_decastes Lyophyllum decastes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NDT OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4NDT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ndt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lyophyllum_decastes Lyophyllum decastes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NDT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NDT FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4nds\|4nds]], [[4ndu\|4ndu]], [[4ndv\|4ndv]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ndt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ndt OCA], [https://pdbe.org/4ndt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ndt RCSB], [https://www.ebi.ac.uk/pdbsum/4ndt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ndt ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4ndt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ndt OCA], [~~http~~://pdbe.org/4ndt PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4ndt RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4ndt PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4ndt ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/AGBL_LYODE AGBL_LYODE]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Lyophyllum decastes]]		[[Category: Lyophyllum decastes]]
-	~~[[Category: Eerde, A Van]]~~	+	[[Category: Grahn E]]
-	[[Category: Grahn, E]]	+	[[Category: Krengel U]]
-	[[Category: Krengel, U]]	+	[[Category: Van Eerde A]]
-	[[Category: ~~Lectin]]~~	+
-	~~[[Category: Sugar binding protein~~]]	+

OCA at 08:32, 10 April 2019

2019-04-10T08:32:57Z

←Older revision		Revision as of 08:32, 10 April 2019
Line 1:		Line 1:

	==Crystal structure of L. decastes alpha-galactosyl-binding lectin, orthorhombic crystal form==		==Crystal structure of L. decastes alpha-galactosyl-binding lectin, orthorhombic crystal form==
-	<StructureSection load='4ndt' size='340' side='right' caption='[[4ndt]], [[Resolution\|resolution]] 1.03Å' scene=''>	+	<StructureSection load='4ndt' size='340' side='right'caption='[[4ndt]], [[Resolution\|resolution]] 1.03Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ndt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lyophyllum_decastes Lyophyllum decastes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NDT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NDT FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ndt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lyophyllum_decastes Lyophyllum decastes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NDT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NDT FirstGlance]. <br>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Lyophyllum decastes]]		[[Category: Lyophyllum decastes]]
	[[Category: Eerde, A Van]]		[[Category: Eerde, A Van]]

OCA at 17:32, 18 January 2017

2017-01-18T17:32:19Z

←Older revision		Revision as of 17:32, 18 January 2017
Line 1:		Line 1:
		+
	==Crystal structure of L. decastes alpha-galactosyl-binding lectin, orthorhombic crystal form==		==Crystal structure of L. decastes alpha-galactosyl-binding lectin, orthorhombic crystal form==
	<StructureSection load='4ndt' size='340' side='right' caption='[[4ndt]], [[Resolution\|resolution]] 1.03Å' scene=''>		<StructureSection load='4ndt' size='340' side='right' caption='[[4ndt]], [[Resolution\|resolution]] 1.03Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4nds\|4nds]], [[4ndu\|4ndu]], [[4ndv\|4ndv]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4nds\|4nds]], [[4ndu\|4ndu]], [[4ndv\|4ndv]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ndt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ndt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ndt RCSB], [http://www.ebi.ac.uk/pdbsum/4ndt PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ndt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ndt OCA], [http://pdbe.org/4ndt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ndt RCSB], [http://www.ebi.ac.uk/pdbsum/4ndt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ndt ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4ndt" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:17, 14 January 2015

2015-01-14T08:17:41Z

←Older revision		Revision as of 08:17, 14 January 2015
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ndt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ndt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ndt RCSB], [http://www.ebi.ac.uk/pdbsum/4ndt PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ndt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ndt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ndt RCSB], [http://www.ebi.ac.uk/pdbsum/4ndt PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of the alpha-galactosyl binding Lyophyllum decastes lectin (LDL) was determined to 1.0 A resolution by Sulfur-SAD (Single-wavelength Anomalous Diffraction). The 10 kDa protein exhibits no sequence similarity to any protein with known structure and adopts a unique lectin fold, where a core of two antiparallel beta-sheets at the heart of the homodimer is connected to the periphery of the structure by intramolecular disulfide bridges. This fold suggests that LDL is secreted, which sets it apart from other mushroom lectins. Structures of complexes between LDL and the ligands alpha-methylgalactoside and globotriose shed light on the binding specificity. Sequence comparison suggests a location and function of LDL and homologous proteins in or at the fungal cell wall. Structural comparison allows the identification of a superfamily of secreted proteins with the LDL fold, which may play a role at the interface between fungi and their environment.
		+
		+	Atomic-resolution Structure of the alpha-galactosyl binding Lyophyllum decastes lectin reveals a new protein family found in both fungi and plants.,van Eerde A, Grahn EM, Winter HC, Goldstein IJ, Krengel U Glycobiology. 2014 Dec 11. pii: cwu136. PMID:25504801<ref>PMID:25504801</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 16:20, 10 December 2014

2014-12-10T16:20:43Z

←Older revision		Revision as of 16:20, 10 December 2014
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Crystal structure of L. decastes alpha-galactosyl-binding lectin, orthorhombic crystal form==
-		+	<StructureSection load='4ndt' size='340' side='right' caption='[[4ndt]], [[Resolution\|resolution]] 1.03Å' scene=''>
-	~~The entry~~ 4ndt is ~~ON HOLD until Jan 28 2016~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4ndt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lyophyllum_decastes Lyophyllum decastes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NDT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NDT FirstGlance]. <br>
-	~~Authors~~: ~~Van Eerde~~, A., ~~Grahn~~, E., Krengel, U.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4nds\|4nds]], [[4ndu\|4ndu]], [[4ndv\|4ndv]]</td></tr>
-	~~Description~~: ~~Crystal structure of L. decastes alpha-galactosyl-~~binding ~~lectin, orthorhombic crystal form~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ndt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ndt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ndt RCSB], [http://www.ebi.ac.uk/pdbsum/4ndt PDBsum]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Lyophyllum decastes]]
		+	[[Category: Eerde, A Van]]
		+	[[Category: Grahn, E]]
		+	[[Category: Krengel, U]]
		+	[[Category: Lectin]]
		+	[[Category: Sugar binding protein]]

OCA at 09:08, 20 October 2014

2014-10-20T09:08:13Z

←Older revision		Revision as of 09:08, 20 October 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4ndt is ON HOLD until ~~Paper Publication~~	+	The entry 4ndt is ON HOLD until Jan 28 2016

	Authors: Van Eerde, A., Grahn, E., Krengel, U.		Authors: Van Eerde, A., Grahn, E., Krengel, U.

	Description: Crystal structure of L. decastes alpha-galactosyl-binding lectin, orthorhombic crystal form		Description: Crystal structure of L. decastes alpha-galactosyl-binding lectin, orthorhombic crystal form

OCA at 09:22, 25 December 2013

2013-12-25T09:22:53Z

←Older revision		Revision as of 09:22, 25 December 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4ndt is ON HOLD	+	The entry 4ndt is ON HOLD until Paper Publication

	Authors: Van Eerde, A., Grahn, E., Krengel, U.		Authors: Van Eerde, A., Grahn, E., Krengel, U.

	Description: Crystal structure of L. decastes alpha-galactosyl-binding lectin, orthorhombic crystal form		Description: Crystal structure of L. decastes alpha-galactosyl-binding lectin, orthorhombic crystal form

OCA: Protected "4ndt" [edit=sysop:move=sysop]

2013-11-13T07:44:40Z

Protected "4ndt" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:44, 13 November 2013

OCA: New page: '''Unreleased structure''' The entry 4ndt is ON HOLD Authors: Van Eerde, A., Grahn, E., Krengel, U. Description: Crystal structure of L. decastes alpha-galactosyl-binding lectin, ortho...

2013-11-13T07:44:39Z

New page: '''Unreleased structure''' The entry 4ndt is ON HOLD Authors: Van Eerde, A., Grahn, E., Krengel, U. Description: Crystal structure of L. decastes alpha-galactosyl-binding lectin, ortho...

New page

'''Unreleased structure'''

The entry 4ndt is ON HOLD

Authors: Van Eerde, A., Grahn, E., Krengel, U.

Description: Crystal structure of L. decastes alpha-galactosyl-binding lectin, orthorhombic crystal form