4nov - Revision history

OCA at 08:38, 11 January 2023

2023-01-11T08:38:51Z

←Older revision		Revision as of 08:38, 11 January 2023
Line 3:		Line 3:
	<StructureSection load='4nov' size='340' side='right'caption='[[4nov]], [[Resolution\|resolution]] 1.33Å' scene=''>		<StructureSection load='4nov' size='340' side='right'caption='[[4nov]], [[Resolution\|resolution]] 1.33Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4nov]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Butpb Butpb~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NOV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4NOV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4nov]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Butyrivibrio_proteoclasticus_B316 Butyrivibrio proteoclasticus B316]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NOV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NOV FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, ~~<scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4nov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nov OCA], [https://pdbe.org/4nov PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4nov RCSB], [https://www.ebi.ac.uk/pdbsum/4nov PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4nov ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xsa43E~~, ~~bpr_I2319 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=515622 BUTPB])~~<~~/td></tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylan_1,4~~-~~beta~~-~~xylosidase Xylan 1,4~~-~~beta~~-~~xylosidase], with EC number [http://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=3.2.~~1~~.37~~ 3~~.2.1.37]~~ </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4nov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nov OCA], [~~http~~://pdbe.org/4nov PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4nov RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4nov PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4nov ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/E0RYY0_BUTPB E0RYY0_BUTPB]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Butpb~~]]	+	[[Category: Butyrivibrio proteoclasticus B316]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Xylan 1,4-beta-xylosidase]]~~	+	[[Category: Arcus VL]]
-	[[Category: Arcus~~, V L~~]]	+	[[Category: Till M]]
-	[[Category: Till, M]]	+
-	~~[[Category: Bladed beta-propellor]]~~	+
-	~~[[Category: Arabinofuranosidase]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 08:37, 10 April 2019

2019-04-10T08:37:07Z

←Older revision		Revision as of 08:37, 10 April 2019
Line 1:		Line 1:

	==Xsa43E, a GH43 family enzyme from Butyrivibrio proteoclasticus==		==Xsa43E, a GH43 family enzyme from Butyrivibrio proteoclasticus==
-	<StructureSection load='4nov' size='340' side='right' caption='[[4nov]], [[Resolution\|resolution]] 1.33Å' scene=''>	+	<StructureSection load='4nov' size='340' side='right'caption='[[4nov]], [[Resolution\|resolution]] 1.33Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4nov]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NOV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NOV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4nov]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Butpb Butpb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NOV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NOV FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xsa43E, bpr_I2319 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=515622 BUTPB])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylan_1,4-beta-xylosidase Xylan 1,4-beta-xylosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.37 3.2.1.37] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylan_1,4-beta-xylosidase Xylan 1,4-beta-xylosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.37 3.2.1.37] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nov OCA], [http://pdbe.org/4nov PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4nov RCSB], [http://www.ebi.ac.uk/pdbsum/4nov PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4nov ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nov OCA], [http://pdbe.org/4nov PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4nov RCSB], [http://www.ebi.ac.uk/pdbsum/4nov PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4nov ProSAT]</span></td></tr>
Line 22:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Butpb]]
		+	[[Category: Large Structures]]
	[[Category: Xylan 1,4-beta-xylosidase]]		[[Category: Xylan 1,4-beta-xylosidase]]
	[[Category: Arcus, V L]]		[[Category: Arcus, V L]]

OCA at 07:39, 11 August 2016

2016-08-11T07:39:14Z

←Older revision		Revision as of 07:39, 11 August 2016
Line 1:		Line 1:
		+
	==Xsa43E, a GH43 family enzyme from Butyrivibrio proteoclasticus==		==Xsa43E, a GH43 family enzyme from Butyrivibrio proteoclasticus==
	<StructureSection load='4nov' size='340' side='right' caption='[[4nov]], [[Resolution\|resolution]] 1.33Å' scene=''>		<StructureSection load='4nov' size='340' side='right' caption='[[4nov]], [[Resolution\|resolution]] 1.33Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylan_1,4-beta-xylosidase Xylan 1,4-beta-xylosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.37 3.2.1.37] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylan_1,4-beta-xylosidase Xylan 1,4-beta-xylosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.37 3.2.1.37] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nov OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4nov RCSB], [http://www.ebi.ac.uk/pdbsum/4nov PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nov OCA], [http://pdbe.org/4nov PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4nov RCSB], [http://www.ebi.ac.uk/pdbsum/4nov PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4nov ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4nov" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:11, 20 January 2015

2015-01-20T08:11:01Z

←Older revision		Revision as of 08:11, 20 January 2015
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Xylan 1,4-beta-xylosidase]]		[[Category: Xylan 1,4-beta-xylosidase]]
-	[[Category: Arcus, V L.]]	+	[[Category: Arcus, V L]]
-	[[Category: Till, M.]]	+	[[Category: Till, M]]
-	[[Category: ~~5 bladed~~ beta-propellor]]	+	[[Category: Bladed beta-propellor]]
	[[Category: Arabinofuranosidase]]		[[Category: Arabinofuranosidase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 07:43, 8 October 2014

2014-10-08T07:43:57Z

←Older revision		Revision as of 07:43, 8 October 2014
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	==Xsa43E, a GH43 family enzyme from Butyrivibrio proteoclasticus==
		+	<StructureSection load='4nov' size='340' side='right' caption='[[4nov]], [[Resolution\|resolution]] 1.33Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4nov]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NOV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NOV FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylan_1,4-beta-xylosidase Xylan 1,4-beta-xylosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.37 3.2.1.37] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nov OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4nov RCSB], [http://www.ebi.ac.uk/pdbsum/4nov PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The rumen of dairy cattle can be thought of as a large, stable fermentation vat and as such it houses a large and diverse community of microorganisms. The bacterium Butyrivibrio proteoclasticus is a representative of a significant component of this microbial community. It is a xylan-degrading organism whose genome encodes a large number of open reading frames annotated as fibre-degrading enzymes. This suite of enzymes is essential for the organism to utilize the plant material within the rumen as a fuel source, facilitating its survival in this competitive environment. Xsa43E, a GH43 enzyme from B. proteoclasticus, has been structurally and functionally characterized. Here, the structure of selenomethionine-derived Xsa43E determined to 1.3 A resolution using single-wavelength anomalous diffraction is reported. Xsa43E possesses the characteristic five-bladed beta-propeller domain seen in all GH43 enzymes. GH43 enzymes can have a range of functions, and the functional characterization of Xsa43E shows it to be an arabinofuranosidase capable of cleaving arabinose side chains from short segments of xylan. Full functional and structural characterization of xylan-degrading enzymes will aid in creating an enzyme cocktail that can be used to completely degrade plant material into simple sugars. These molecules have a range of applications as starting materials for many industrial processes, including renewable alternatives to fossil fuels.

-	~~The entry 4nov is ON HOLD until Paper Publication~~	+	Structural analysis of the GH43 enzyme Xsa43E from Butyrivibrio proteoclasticus.,Till M, Goldstone D, Card G, Attwood GT, Moon CD, Arcus VL Acta Crystallogr F Struct Biol Commun. 2014 Sep 1;70(Pt 9):1193-8. doi:, 10.1107/S2053230X14014745. Epub 2014 Aug 29. PMID:25195890<ref>PMID:25195890</ref>

-	~~Authors: Till~~, M., Arcus, V.L.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description~~: ~~Xsa43E~~, ~~a GH43 family enzyme from Butyrivibrio proteoclasticus~~	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Xylan 1,4-beta-xylosidase]]
		+	[[Category: Arcus, V L.]]
		+	[[Category: Till, M.]]
		+	[[Category: 5 bladed beta-propellor]]
		+	[[Category: Arabinofuranosidase]]
		+	[[Category: Hydrolase]]

OCA at 06:51, 4 December 2013

2013-12-04T06:51:10Z

←Older revision		Revision as of 06:51, 4 December 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4nov is ON HOLD	+	The entry 4nov is ON HOLD until Paper Publication

	Authors: Till, M., Arcus, V.L.		Authors: Till, M., Arcus, V.L.

	Description: Xsa43E, a GH43 family enzyme from Butyrivibrio proteoclasticus		Description: Xsa43E, a GH43 family enzyme from Butyrivibrio proteoclasticus

OCA: Protected "4nov" [edit=sysop:move=sysop]

2013-11-27T09:53:56Z

Protected "4nov" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:53, 27 November 2013

OCA: New page: '''Unreleased structure''' The entry 4nov is ON HOLD Authors: Till, M., Arcus, V.L. Description: Xsa43E, a GH43 family enzyme from Butyrivibrio proteoclasticus

2013-11-27T09:53:54Z

New page: '''Unreleased structure''' The entry 4nov is ON HOLD Authors: Till, M., Arcus, V.L. Description: Xsa43E, a GH43 family enzyme from Butyrivibrio proteoclasticus

New page

'''Unreleased structure'''

The entry 4nov is ON HOLD

Authors: Till, M., Arcus, V.L.

Description: Xsa43E, a GH43 family enzyme from Butyrivibrio proteoclasticus