4ox0 - Revision history

OCA at 00:37, 28 December 2023

2023-12-28T00:37:29Z

←Older revision		Revision as of 00:37, 28 December 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ox0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OX0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4OX0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ox0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OX0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4OX0 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ox0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ox0 OCA], [https://pdbe.org/4ox0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ox0 RCSB], [https://www.ebi.ac.uk/pdbsum/4ox0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ox0 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.49Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ox0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ox0 OCA], [https://pdbe.org/4ox0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ox0 RCSB], [https://www.ebi.ac.uk/pdbsum/4ox0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ox0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 07:49, 25 January 2023

2023-01-25T07:49:51Z

←Older revision		Revision as of 07:49, 25 January 2023
Line 1:		Line 1:

	==Crystal structure of the keratin-like domain from the MADS transcription factor Sepallata 3==		==Crystal structure of the keratin-like domain from the MADS transcription factor Sepallata 3==
-	<StructureSection load='4ox0' size='340' side='right' caption='[[4ox0]], [[Resolution\|resolution]] 2.49Å' scene=''>	+	<StructureSection load='4ox0' size='340' side='right'caption='[[4ox0]], [[Resolution\|resolution]] 2.49Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ox0]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Arath Arath~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OX0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4OX0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ox0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OX0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4OX0 FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AGL9,At1g24260,F3I6.19,SEP3,sep3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ox0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ox0 OCA], [https://pdbe.org/4ox0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ox0 RCSB], [https://www.ebi.ac.uk/pdbsum/4ox0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ox0 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4ox0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ox0 OCA], [~~http~~://pdbe.org/4ox0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4ox0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4ox0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4ox0 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/SEP3_ARATH SEP3_ARATH]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arath~~]]	+	[[Category: Arabidopsis thaliana]]
-	[[Category: ~~Acajjaoui, C~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Zubieta,~~ C]]	+	[[Category: Acajjaoui C]]
-	[[Category: ~~Amphipathic alpha helix]]~~	+	[[Category: Zubieta C]]
-	~~[[Category: Coiled-coil]]~~	+
-	~~[[Category: Keratin-like domain]]~~	+
-	~~[[Category: Oligomerization domain]]~~	+
-	~~[[Category: Transcription~~]]	+

OCA at 09:03, 1 November 2017

2017-11-01T09:03:25Z

←Older revision		Revision as of 09:03, 1 November 2017
Line 3:		Line 3:
	<StructureSection load='4ox0' size='340' side='right' caption='[[4ox0]], [[Resolution\|resolution]] 2.49Å' scene=''>		<StructureSection load='4ox0' size='340' side='right' caption='[[4ox0]], [[Resolution\|resolution]] 2.49Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ox0]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OX0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4OX0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ox0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OX0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4OX0 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ox0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ox0 OCA], [http://pdbe.org/4ox0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ox0 RCSB], [http://www.ebi.ac.uk/pdbsum/4ox0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ox0 ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AGL9,At1g24260,F3I6.19,SEP3,sep3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ox0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ox0 OCA], [http://pdbe.org/4ox0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ox0 RCSB], [http://www.ebi.ac.uk/pdbsum/4ox0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ox0 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 19:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Arath]]
	[[Category: Acajjaoui, C]]		[[Category: Acajjaoui, C]]
	[[Category: Zubieta, C]]		[[Category: Zubieta, C]]

OCA at 14:34, 11 August 2016

2016-08-11T14:34:17Z

←Older revision		Revision as of 14:34, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of the keratin-like domain from the MADS transcription factor Sepallata 3==		==Crystal structure of the keratin-like domain from the MADS transcription factor Sepallata 3==
	<StructureSection load='4ox0' size='340' side='right' caption='[[4ox0]], [[Resolution\|resolution]] 2.49Å' scene=''>		<StructureSection load='4ox0' size='340' side='right' caption='[[4ox0]], [[Resolution\|resolution]] 2.49Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ox0]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OX0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4OX0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ox0]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OX0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4OX0 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ox0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ox0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ox0 RCSB], [http://www.ebi.ac.uk/pdbsum/4ox0 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ox0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ox0 OCA], [http://pdbe.org/4ox0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ox0 RCSB], [http://www.ebi.ac.uk/pdbsum/4ox0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ox0 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 13:		Line 14:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4ox0" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:44, 12 November 2014

2014-11-12T07:44:40Z

←Older revision		Revision as of 07:44, 12 November 2014
Line 17:		Line 17:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Acajjaoui, C.]]	+	[[Category: Acajjaoui, C]]
-	[[Category: Zubieta, C.]]	+	[[Category: Zubieta, C]]
	[[Category: Amphipathic alpha helix]]		[[Category: Amphipathic alpha helix]]
	[[Category: Coiled-coil]]		[[Category: Coiled-coil]]

OCA at 11:40, 22 October 2014

2014-10-22T11:40:53Z

←Older revision		Revision as of 11:40, 22 October 2014
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	==Crystal structure of the keratin-like domain from the MADS transcription factor Sepallata 3==
		+	<StructureSection load='4ox0' size='340' side='right' caption='[[4ox0]], [[Resolution\|resolution]] 2.49Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4ox0]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OX0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4OX0 FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ox0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ox0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ox0 RCSB], [http://www.ebi.ac.uk/pdbsum/4ox0 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	In plants, MADS domain transcription factors act as central regulators of diverse developmental pathways. In Arabidopsis thaliana, one of the most central members of this family is SEPALLATA3 (SEP3), which is involved in many aspects of plant reproduction, including floral meristem and floral organ development. SEP3 has been shown to form homo and heterooligomeric complexes with other MADS domain transcription factors through its intervening (I) and keratin-like (K) domains. SEP3 function depends on its ability to form specific protein-protein complexes; however, the atomic level determinants of oligomerization are poorly understood. Here, we report the 2.5-A crystal structure of a small portion of the intervening and the complete keratin-like domain of SEP3. The domains form two amphipathic alpha helices separated by a rigid kink, which prevents intramolecular association and presents separate dimerization and tetramerization interfaces comprising predominantly hydrophobic patches. Mutations to the tetramerization interface demonstrate the importance of highly conserved hydrophobic residues for tetramer stability. Atomic force microscopy was used to show SEP3-DNA interactions and the role of oligomerization in DNA binding and conformation. Based on these data, the oligomerization patterns of the larger family of MADS domain transcription factors can be predicted and manipulated based on the primary sequence.

-	~~The entry 4ox0 is ON HOLD until Paper Publication~~	+	Structural Basis for the Oligomerization of the MADS Domain Transcription Factor SEPALLATA3 in Arabidopsis.,Puranik S, Acajjaoui S, Conn S, Costa L, Conn V, Vial A, Marcellin R, Melzer R, Brown E, Hart D, Theissen G, Silva CS, Parcy F, Dumas R, Nanao M, Zubieta C Plant Cell. 2014 Sep 16. pii: tpc.114.127910. PMID:25228343<ref>PMID:25228343</ref>

-	~~Authors~~: ~~Zubieta~~, C.~~, Acajjaoui~~, C.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description~~: ~~Crystal structure of the keratin~~-like domain ~~from the MADS transcription factor Sepallata 3~~	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Acajjaoui, C.]]
		+	[[Category: Zubieta, C.]]
		+	[[Category: Amphipathic alpha helix]]
		+	[[Category: Coiled-coil]]
		+	[[Category: Keratin-like domain]]
		+	[[Category: Oligomerization domain]]
		+	[[Category: Transcription]]

OCA at 08:27, 2 April 2014

2014-04-02T08:27:17Z

←Older revision		Revision as of 08:27, 2 April 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4ox0 is ON HOLD	+	The entry 4ox0 is ON HOLD until Paper Publication

	Authors: Zubieta, C., Acajjaoui, C.		Authors: Zubieta, C., Acajjaoui, C.

	Description: Crystal structure of the keratin-like domain from the MADS transcription factor Sepallata 3		Description: Crystal structure of the keratin-like domain from the MADS transcription factor Sepallata 3

OCA: Protected "4ox0" [edit=sysop:move=sysop]

2014-02-13T04:53:09Z

Protected "4ox0" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:53, 13 February 2014

OCA: New page: '''Unreleased structure''' The entry 4ox0 is ON HOLD Authors: Zubieta, C., Acajjaoui, C. Description: Crystal structure of the keratin-like domain from the MADS transcription factor Se...

2014-02-13T04:53:09Z

New page: '''Unreleased structure''' The entry 4ox0 is ON HOLD Authors: Zubieta, C., Acajjaoui, C. Description: Crystal structure of the keratin-like domain from the MADS transcription factor Se...

New page

'''Unreleased structure'''

The entry 4ox0 is ON HOLD

Authors: Zubieta, C., Acajjaoui, C.

Description: Crystal structure of the keratin-like domain from the MADS transcription factor Sepallata 3