4pet - Revision history

OCA at 09:20, 15 November 2023

2023-11-15T09:20:45Z

←Older revision		Revision as of 09:20, 15 November 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4pet]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Colwellia_psychrerythraea_34H Colwellia psychrerythraea 34H]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PET OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PET FirstGlance]. <br>		<table><tr><td colspan='2'>[[4pet]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Colwellia_psychrerythraea_34H Colwellia psychrerythraea 34H]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PET OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PET FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pet FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pet OCA], [https://pdbe.org/4pet PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pet RCSB], [https://www.ebi.ac.uk/pdbsum/4pet PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pet ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pet FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pet OCA], [https://pdbe.org/4pet PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pet RCSB], [https://www.ebi.ac.uk/pdbsum/4pet PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pet ProSAT]</span></td></tr>
	</table>		</table>

OCA at 12:58, 1 February 2023

2023-02-01T12:58:55Z

←Older revision		Revision as of 12:58, 1 February 2023
Line 3:		Line 3:
	<StructureSection load='4pet' size='340' side='right'caption='[[4pet]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='4pet' size='340' side='right'caption='[[4pet]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4pet]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Colp3 Colp3~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PET OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4PET FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4pet]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Colwellia_psychrerythraea_34H Colwellia psychrerythraea 34H]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PET OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PET FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=~~PYR~~:~~PYRUVIC+ACID~~'>~~PYR~~</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene>~~</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pet FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pet OCA], [https://pdbe.org/4pet PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pet RCSB], [https://www.ebi.ac.uk/pdbsum/4pet PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pet ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CPS_0129 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=167879 COLP3])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4pet FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pet OCA], [~~http~~://pdbe.org/4pet PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4pet RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4pet PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4pet ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/Q48AL6_COLP3 Q48AL6_COLP3]] Part of the tripartite ATP-independent periplasmic (TRAP) transport system (By similarity).[PIRNR:PIRNR039026]	+	[https://www.uniprot.org/uniprot/Q48AL6_COLP3 Q48AL6_COLP3] Part of the tripartite ATP-independent periplasmic (TRAP) transport system (By similarity).[PIRNR:PIRNR039026]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Colp3~~]]	+	[[Category: Colwellia psychrerythraea 34H]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Almo, S C~~]]	+	[[Category: Al Obaidi NF]]
-	[[Category: ~~Attonito, J D~~]]	+	[[Category: Almo SC]]
-	[[Category: ~~Chowdhury, S~~]]	+	[[Category: Attonito JD]]
-	[[Category: ~~EFI, Enzyme Function Initiative~~]]	+	[[Category: Chowdhury S]]
-	[[Category: Evans, B]]	+	[[Category: Evans B]]
-	[[Category: Gerlt~~, J A]]~~	+	[[Category: Gerlt JA]]
-	~~[[Category: Glenn, A Scott~~]]	+	[[Category: Hillerich B]]
-	[[Category: Hillerich, B]]	+	[[Category: Love J]]
-	[[Category: Love, J]]	+	[[Category: Morisco LL]]
-	[[Category: Morisco~~, L L~~]]	+	[[Category: Scott Glenn A]]
-	[[Category: ~~Obaidi, N F.Al~~]]	+	[[Category: Seidel RD]]
-	[[Category: Seidel~~, R D~~]]	+	[[Category: Stead M]]
-	[[Category: Stead, M]]	+	[[Category: Vetting MW]]
-	[[Category: Vetting~~, M W~~]]	+	[[Category: Wasserman SR]]
-	[[Category: Wasserman~~, S R~~]]	+	[[Category: Whalen KL]]
-	[[Category: Whalen~~, K L]]~~	+
-	~~[[Category: Efi]]~~	+
-	~~[[Category: Enzyme function initiative]]~~	+
-	~~[[Category: Solute-binding protein]]~~	+
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Trap periplasmic solute binding family~~]]	+

OCA at 10:11, 25 December 2019

2019-12-25T10:11:58Z

←Older revision		Revision as of 10:11, 25 December 2019
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM COLWELLIA PSYCHRERYTHRAEA (CPS_0129, TARGET EFI-510097) WITH BOUND CALCIUM AND PYRUVATE==		==CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM COLWELLIA PSYCHRERYTHRAEA (CPS_0129, TARGET EFI-510097) WITH BOUND CALCIUM AND PYRUVATE==
-	<StructureSection load='4pet' size='340' side='right' caption='[[4pet]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='4pet' size='340' side='right'caption='[[4pet]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4pet]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Colp3 Colp3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PET OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PET FirstGlance]. <br>		<table><tr><td colspan='2'>[[4pet]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Colp3 Colp3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PET OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PET FirstGlance]. <br>
Line 25:		Line 25:
	</StructureSection>		</StructureSection>
	[[Category: Colp3]]		[[Category: Colp3]]
		+	[[Category: Large Structures]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Attonito, J D]]		[[Category: Attonito, J D]]

OCA at 11:59, 6 November 2017

2017-11-06T11:59:22Z

←Older revision		Revision as of 11:59, 6 November 2017
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM COLWELLIA PSYCHRERYTHRAEA (CPS_0129, TARGET EFI-510097) WITH BOUND CALCIUM AND PYRUVATE==		==CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM COLWELLIA PSYCHRERYTHRAEA (CPS_0129, TARGET EFI-510097) WITH BOUND CALCIUM AND PYRUVATE==
	<StructureSection load='4pet' size='340' side='right' caption='[[4pet]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='4pet' size='340' side='right' caption='[[4pet]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4pet]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PET OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PET FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4pet]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Colp3 Colp3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PET OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PET FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pet FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pet OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pet RCSB], [http://www.ebi.ac.uk/pdbsum/4pet PDBsum]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CPS_0129 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=167879 COLP3])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pet FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pet OCA], [http://pdbe.org/4pet PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4pet RCSB], [http://www.ebi.ac.uk/pdbsum/4pet PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4pet ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 19:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4pet" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Colp3]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Attonito, J D]]		[[Category: Attonito, J D]]

OCA at 07:42, 26 August 2015

2015-08-26T07:42:27Z

←Older revision		Revision as of 07:42, 26 August 2015
Line 39:		Line 39:
	[[Category: Efi]]		[[Category: Efi]]
	[[Category: Enzyme function initiative]]		[[Category: Enzyme function initiative]]
		+	[[Category: Solute-binding protein]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Trap periplasmic solute binding family]]		[[Category: Trap periplasmic solute binding family]]

OCA at 08:21, 25 February 2015

2015-02-25T08:21:14Z

←Older revision		Revision as of 08:21, 25 February 2015
Line 9:		Line 9:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/Q48AL6_COLP3 Q48AL6_COLP3]] Part of the tripartite ATP-independent periplasmic (TRAP) transport system (By similarity).[PIRNR:PIRNR039026]		[[http://www.uniprot.org/uniprot/Q48AL6_COLP3 Q48AL6_COLP3]] Part of the tripartite ATP-independent periplasmic (TRAP) transport system (By similarity).[PIRNR:PIRNR039026]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The rate at which genome sequencing data is accruing demands enhanced methods for functional annotation and metabolism discovery. Solute binding proteins (SBPs) facilitate the transport of the first reactant in a metabolic pathway, thereby constraining the regions of chemical space and the chemistries that must be considered for pathway reconstruction. We describe high-throughput protein production and differential scanning fluorimetry platforms, which enabled the screening of 158 SBPs against a 189 component library specifically tailored for this class of proteins. Like all screening efforts, this approach is limited by the practical constraints imposed by construction of the library, i.e., we can study only those metabolites that are known to exist and which can be made in sufficient quantities for experimentation. To move beyond these inherent limitations, we illustrate the promise of crystallographic- and mass spectrometric-based approaches for the unbiased use of entire metabolomes as screening libraries. Together, our approaches identified 40 new SBP ligands, generated experiment-based annotations for 2084 SBPs in 71 isofunctional clusters, and defined numerous metabolic pathways, including novel catabolic pathways for the utilization of ethanolamine as sole nitrogen source and the use of d-Ala-d-Ala as sole carbon source. These efforts begin to define an integrated strategy for realizing the full value of amassing genome sequence data.
		+
		+	Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.,Vetting MW, Al-Obaidi N, Zhao S, San Francisco B, Kim J, Wichelecki DJ, Bouvier JT, Solbiati JO, Vu H, Zhang X, Rodionov DA, Love JD, Hillerich BS, Seidel RD, Quinn RJ, Osterman AL, Cronan JE, Jacobson MP, Gerlt JA, Almo SC Biochemistry. 2015 Jan 27;54(3):909-31. doi: 10.1021/bi501388y. Epub 2015 Jan 16. PMID:25540822<ref>PMID:25540822</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 09:37, 25 December 2014

2014-12-25T09:37:49Z

←Older revision		Revision as of 09:37, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4pet]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PET OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PET FirstGlance]. <br>		<table><tr><td colspan='2'>[[4pet]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PET OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PET FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pet FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pet OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pet RCSB], [http://www.ebi.ac.uk/pdbsum/4pet PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pet FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pet OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pet RCSB], [http://www.ebi.ac.uk/pdbsum/4pet PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q48AL6_COLP3 Q48AL6_COLP3]] Part of the tripartite ATP-independent periplasmic (TRAP) transport system (By similarity).[PIRNR:PIRNR039026]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Attonito, J D.]]	+	[[Category: Attonito, J D]]
-	[[Category: Chowdhury, S.]]	+	[[Category: Chowdhury, S]]
-	[[Category: EFI, Enzyme Function Initiative.]]	+	[[Category: EFI, Enzyme Function Initiative]]
-	[[Category: Evans, B.]]	+	[[Category: Evans, B]]
-	[[Category: Gerlt, J A.]]	+	[[Category: Gerlt, J A]]
-	[[Category: Glenn, A Scott.]]	+	[[Category: Glenn, A Scott]]
-	[[Category: Hillerich, B.]]	+	[[Category: Hillerich, B]]
-	[[Category: Love, J.]]	+	[[Category: Love, J]]
-	[[Category: Morisco, L L.]]	+	[[Category: Morisco, L L]]
-	[[Category: Obaidi, N F.Al.]]	+	[[Category: Obaidi, N F.Al]]
-	[[Category: Seidel, R D.]]	+	[[Category: Seidel, R D]]
-	[[Category: Stead, M.]]	+	[[Category: Stead, M]]
-	[[Category: Vetting, M W.]]	+	[[Category: Vetting, M W]]
-	[[Category: Wasserman, S R.]]	+	[[Category: Wasserman, S R]]
-	[[Category: Whalen, K L.]]	+	[[Category: Whalen, K L]]
	[[Category: Efi]]		[[Category: Efi]]
	[[Category: Enzyme function initiative]]		[[Category: Enzyme function initiative]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Trap periplasmic solute binding family]]		[[Category: Trap periplasmic solute binding family]]

OCA at 07:15, 11 June 2014

2014-06-11T07:15:05Z

←Older revision		Revision as of 07:15, 11 June 2014
Line 2:		Line 2:
	<StructureSection load='4pet' size='340' side='right' caption='[[4pet]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='4pet' size='340' side='right' caption='[[4pet]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4pet]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PET OCA]. <br>	+	<table><tr><td colspan='2'>[[4pet]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PET OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PET FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene><br>		</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene><br>
	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pet FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pet OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pet RCSB], [http://www.ebi.ac.uk/pdbsum/4pet PDBsum]</span></td></tr>		<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pet FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pet OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pet RCSB], [http://www.ebi.ac.uk/pdbsum/4pet PDBsum]</span></td></tr>
	<table>		<table>

OCA at 07:28, 14 May 2014

2014-05-14T07:28:38Z

←Older revision		Revision as of 07:28, 14 May 2014
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM COLWELLIA PSYCHRERYTHRAEA (CPS_0129, TARGET EFI-510097) WITH BOUND CALCIUM AND PYRUVATE==
-		+	<StructureSection load='4pet' size='340' side='right' caption='[[4pet]], [[Resolution\|resolution]] 1.90Å' scene=''>
-	~~The entry~~ 4pet is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4pet]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PET OCA]. <br>
-	~~Authors~~: ~~Vetting~~, M.W., ~~Al Obaidi, N~~.F., ~~Morisco, L~~.L., ~~Wasserman, S~~.R., ~~Stead, M~~., Attonito, J.D.~~, Scott Glenn, A.,~~ Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., ~~Whalen, K.L~~., ~~Gerlt, J~~.~~A., Almo~~, S.C., Enzyme ~~Function Initiative (EFI)~~	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~Description~~: ~~CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM COLWELLIA PSYCHRERYTHRAEA (CPS_0129, TARGET EFI-510097) WITH BOUND CALCIUM AND PYRUVATE~~	+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pet FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pet OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pet RCSB], [http://www.ebi.ac.uk/pdbsum/4pet PDBsum]</span></td></tr>
		+	<table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Almo, S C.]]
		+	[[Category: Attonito, J D.]]
		+	[[Category: Chowdhury, S.]]
		+	[[Category: EFI, Enzyme Function Initiative.]]
		+	[[Category: Evans, B.]]
		+	[[Category: Gerlt, J A.]]
		+	[[Category: Glenn, A Scott.]]
		+	[[Category: Hillerich, B.]]
		+	[[Category: Love, J.]]
		+	[[Category: Morisco, L L.]]
		+	[[Category: Obaidi, N F.Al.]]
		+	[[Category: Seidel, R D.]]
		+	[[Category: Stead, M.]]
		+	[[Category: Vetting, M W.]]
		+	[[Category: Wasserman, S R.]]
		+	[[Category: Whalen, K L.]]
		+	[[Category: Efi]]
		+	[[Category: Enzyme function initiative]]
		+	[[Category: Structural genomic]]
		+	[[Category: Trap periplasmic solute binding family]]

OCA: Protected "4pet" [edit=sysop:move=sysop]

2014-04-30T06:32:50Z

Protected "4pet" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:32, 30 April 2014