4q5c - Revision history

OCA at 07:44, 8 February 2023

2023-02-08T07:44:15Z

←Older revision		Revision as of 07:44, 8 February 2023
Line 3:		Line 3:
	<StructureSection load='4q5c' size='340' side='right'caption='[[4q5c]], [[Resolution\|resolution]] 1.62Å' scene=''>		<StructureSection load='4q5c' size='340' side='right'caption='[[4q5c]], [[Resolution\|resolution]] 1.62Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4q5c]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thioalkalivibrio_nitratireducens Thioalkalivibrio nitratireducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q5C OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4Q5C FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4q5c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thioalkalivibrio_nitratireducens Thioalkalivibrio nitratireducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Q5C FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q4u\|4q4u]], [[4q5b\|4q5b]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q5c OCA], [https://pdbe.org/4q5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4q5c RCSB], [https://www.ebi.ac.uk/pdbsum/4q5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4q5c ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q5c OCA], [~~http~~://pdbe.org/4q5c PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4q5c RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4q5c PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4q5c ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~Q5F2I3_9GAMM Q5F2I3_9GAMM~~]~~] Plays a role in nitrite~~ reduction (~~By similarity~~).~~[SAAS~~:~~SAAS003321_004_001592]~~	+	[https://www.uniprot.org/uniprot/NIR_THIND NIR_THIND] Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process (PubMed:16500161, PubMed:22281743). Has very low activity toward hydroxylamine (PubMed:16500161). Has even lower activity toward sulfite (PubMed:16500161, PubMed:22281743). Sulfite reductase activity is maximal at neutral pH (PubMed:20944237).<ref>PMID:16500161</ref> <ref>PMID:20944237</ref> <ref>PMID:22281743</ref>

	==See Also==		==See Also==
	*[[Cytochrome c nitrite reductase\|Cytochrome c nitrite reductase]]		*[[Cytochrome c nitrite reductase\|Cytochrome c nitrite reductase]]
-	*[[Nitrite reductase 3D structures\|Nitrite reductase 3D structures]]	+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Thioalkalivibrio nitratireducens]]		[[Category: Thioalkalivibrio nitratireducens]]
-	[[Category: Lazarenko~~, V A~~]]	+	[[Category: Lazarenko VA]]
-	[[Category: Polyakov~~, K M~~]]	+	[[Category: Polyakov KM]]
-	[[Category: Popov~~, A N~~]]	+	[[Category: Popov AN]]
-	[[Category: Popov~~, V O~~]]	+	[[Category: Popov VO]]
-	[[Category: Tikhonov~~, A V~~]]	+	[[Category: Tikhonov AV]]
-	[[Category: Tikhonova~~, T V~~]]	+	[[Category: Tikhonova TV]]
-	[[Category: Trofimov~~, A A]]~~	+	[[Category: Trofimov AA]]
-	~~[[Category: Hemes c]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 08:11, 19 February 2020

2020-02-19T08:11:44Z

←Older revision		Revision as of 08:11, 19 February 2020
Line 1:		Line 1:

	==TvNiR in complex with sulfite, middle dose data set==		==TvNiR in complex with sulfite, middle dose data set==
-	<StructureSection load='4q5c' size='340' side='right' caption='[[4q5c]], [[Resolution\|resolution]] 1.62Å' scene=''>	+	<StructureSection load='4q5c' size='340' side='right'caption='[[4q5c]], [[Resolution\|resolution]] 1.62Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4q5c]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thioalkalivibrio_nitratireducens Thioalkalivibrio nitratireducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Q5C FirstGlance]. <br>		<table><tr><td colspan='2'>[[4q5c]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thioalkalivibrio_nitratireducens Thioalkalivibrio nitratireducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Q5C FirstGlance]. <br>
Line 10:		Line 10:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/Q5F2I3_9GAMM Q5F2I3_9GAMM]] Plays a role in nitrite reduction (By similarity).[SAAS:SAAS003321_004_001592]		[[http://www.uniprot.org/uniprot/Q5F2I3_9GAMM Q5F2I3_9GAMM]] Plays a role in nitrite reduction (By similarity).[SAAS:SAAS003321_004_001592]
		+
		+	==See Also==
		+	*[[Cytochrome c nitrite reductase\|Cytochrome c nitrite reductase]]
		+	*[[Nitrite reductase 3D structures\|Nitrite reductase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Thioalkalivibrio nitratireducens]]		[[Category: Thioalkalivibrio nitratireducens]]
	[[Category: Lazarenko, V A]]		[[Category: Lazarenko, V A]]

OCA at 15:04, 5 August 2016

2016-08-05T15:04:59Z

←Older revision		Revision as of 15:04, 5 August 2016
Line 1:		Line 1:
		+
	==TvNiR in complex with sulfite, middle dose data set==		==TvNiR in complex with sulfite, middle dose data set==
	<StructureSection load='4q5c' size='340' side='right' caption='[[4q5c]], [[Resolution\|resolution]] 1.62Å' scene=''>		<StructureSection load='4q5c' size='340' side='right' caption='[[4q5c]], [[Resolution\|resolution]] 1.62Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q4u\|4q4u]], [[4q5b\|4q5b]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q4u\|4q4u]], [[4q5b\|4q5b]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q5c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4q5c RCSB], [http://www.ebi.ac.uk/pdbsum/4q5c PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q5c OCA], [http://pdbe.org/4q5c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4q5c RCSB], [http://www.ebi.ac.uk/pdbsum/4q5c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4q5c ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 19:47, 25 December 2014

2014-12-25T19:47:57Z

←Older revision		Revision as of 19:47, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4q5c]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thioalkalivibrio_nitratireducens Thioalkalivibrio nitratireducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Q5C FirstGlance]. <br>		<table><tr><td colspan='2'>[[4q5c]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thioalkalivibrio_nitratireducens Thioalkalivibrio nitratireducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Q5C FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q4u\|4q4u]], [[4q5b\|4q5b]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q4u\|4q4u]], [[4q5b\|4q5b]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q5c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4q5c RCSB], [http://www.ebi.ac.uk/pdbsum/4q5c PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q5c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4q5c RCSB], [http://www.ebi.ac.uk/pdbsum/4q5c PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q5F2I3_9GAMM Q5F2I3_9GAMM]] Plays a role in nitrite reduction (By similarity).[SAAS:SAAS003321_004_001592]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Thioalkalivibrio nitratireducens]]		[[Category: Thioalkalivibrio nitratireducens]]
-	[[Category: Lazarenko, V A.]]	+	[[Category: Lazarenko, V A]]
-	[[Category: Polyakov, K M.]]	+	[[Category: Polyakov, K M]]
-	[[Category: Popov, A N.]]	+	[[Category: Popov, A N]]
-	[[Category: Popov, V O.]]	+	[[Category: Popov, V O]]
-	[[Category: Tikhonov, A V.]]	+	[[Category: Tikhonov, A V]]
-	[[Category: Tikhonova, T V.]]	+	[[Category: Tikhonova, T V]]
-	[[Category: Trofimov, A A.]]	+	[[Category: Trofimov, A A]]
-	[[Category: ~~8 hemes~~ c]]	+	[[Category: Hemes c]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]

OCA at 06:12, 4 September 2014

2014-09-04T06:12:59Z

←Older revision		Revision as of 06:12, 4 September 2014
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==TvNiR in complex with sulfite, middle dose data set==
-		+	<StructureSection load='4q5c' size='340' side='right' caption='[[4q5c]], [[Resolution\|resolution]] 1.62Å' scene=''>
-	~~The entry~~ 4q5c is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4q5c]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thioalkalivibrio_nitratireducens Thioalkalivibrio nitratireducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Q5C FirstGlance]. <br>
-	~~Authors~~: ~~Lazarenko~~, V.A., ~~Polyakov~~, K.M., ~~Trofimov~~, A.A., Popov, A.N., ~~Tikhonova, T.~~V., Tikhonov, A.V., ~~Popov,~~ V.O.	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q4u\|4q4u]], [[4q5b\|4q5b]]</td></tr>
-	~~Description~~: ~~TvNiR in complex with sulfite, middle dose data set~~	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q5c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4q5c RCSB], [http://www.ebi.ac.uk/pdbsum/4q5c PDBsum]</span></td></tr>
		+	<table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Thioalkalivibrio nitratireducens]]
		+	[[Category: Lazarenko, V A.]]
		+	[[Category: Polyakov, K M.]]
		+	[[Category: Popov, A N.]]
		+	[[Category: Popov, V O.]]
		+	[[Category: Tikhonov, A V.]]
		+	[[Category: Tikhonova, T V.]]
		+	[[Category: Trofimov, A A.]]
		+	[[Category: 8 hemes c]]
		+	[[Category: Oxidoreductase]]

OCA at 06:42, 30 April 2014

2014-04-30T06:42:33Z

←Older revision		Revision as of 06:42, 30 April 2014
Line 3:		Line 3:
	The entry 4q5c is ON HOLD		The entry 4q5c is ON HOLD

-	Authors: Lazarenko, V.A., Polyakov, K.M. , Trofimov, A.A. , Popov, A.N. , Tikhonova, T.V. , Tikhonov, A.V. , Popov, V.O.	+	Authors: Lazarenko, V.A., Polyakov, K.M., Trofimov, A.A., Popov, A.N., Tikhonova, T.V., Tikhonov, A.V., Popov, V.O.

	Description: TvNiR in complex with sulfite, middle dose data set		Description: TvNiR in complex with sulfite, middle dose data set

OCA: Protected "4q5c" [edit=sysop:move=sysop]

2014-04-23T07:30:19Z

Protected "4q5c" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:30, 23 April 2014

OCA: New page: '''Unreleased structure''' The entry 4q5c is ON HOLD Authors: Lazarenko, V.A., Polyakov, K.M. , Trofimov, A.A. , Popov, A.N. , Tikhonova, T.V. , Tikhonov, A.V. , Popov, V.O. Descriptio...

2014-04-23T07:30:18Z

New page: '''Unreleased structure''' The entry 4q5c is ON HOLD Authors: Lazarenko, V.A., Polyakov, K.M. , Trofimov, A.A. , Popov, A.N. , Tikhonova, T.V. , Tikhonov, A.V. , Popov, V.O. Descriptio...

New page

'''Unreleased structure'''

The entry 4q5c is ON HOLD

Authors: Lazarenko, V.A., Polyakov, K.M. , Trofimov, A.A. , Popov, A.N. , Tikhonova, T.V. , Tikhonov, A.V. , Popov, V.O.

Description: TvNiR in complex with sulfite, middle dose data set