4qiw - Revision history

OCA at 11:31, 15 February 2023

2023-02-15T11:31:51Z

←Older revision		Revision as of 11:31, 15 February 2023
Line 3:		Line 3:
	<StructureSection load='4qiw' size='340' side='right'caption='[[4qiw]], [[Resolution\|resolution]] 3.50Å' scene=''>		<StructureSection load='4qiw' size='340' side='right'caption='[[4qiw]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4qiw]] is a 22 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Thermococcus_kodakarensis~~ Thermococcus kodakarensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QIW OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4QIW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4qiw]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QIW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4QIW FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4qiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qiw OCA], [https://pdbe.org/4qiw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4qiw RCSB], [https://www.ebi.ac.uk/pdbsum/4qiw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4qiw ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4qiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qiw OCA], [~~http~~://pdbe.org/4qiw PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4qiw RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4qiw PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4qiw ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~RPOP_THEKO RPOP_THEKO~~]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOA2_THEKO RPOA2_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOH_THEKO RPOH_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOL_THEKO RPOL_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOK_THEKO RPOK_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOD_THEKO RPOD_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPON_THEKO RPON_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	+	[https://www.uniprot.org/uniprot/Q5JE33_THEKO Q5JE33_THEKO]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 20:

	==See Also==		==See Also==
-	*[[RNA polymerase\|RNA polymerase]]	+	*[[RNA polymerase 3D structures\|RNA polymerase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: DNA-directed RNA polymerase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Thermococcus kodakarensis]]	+	[[Category: Thermococcus kodakarensis KOD1]]
-	[[Category: Jun, S H]]	+	[[Category: Jun S-H]]
-	[[Category: Murakami~~, K S]]~~	+	[[Category: Murakami KS]]
-	~~[[Category: Dna-directed rna polymerase]]~~	+
-	~~[[Category: Transcription~~]]	+

OCA at 09:09, 24 April 2019

2019-04-24T09:09:13Z

←Older revision		Revision as of 09:09, 24 April 2019
Line 1:		Line 1:
-	~~{{Large structure}}~~	+
	==Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis==		==Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis==
-	<StructureSection load='4qiw' size='340' side='right' caption='[[4qiw]], [[Resolution\|resolution]] 3.50Å' scene=''>	+	<StructureSection load='4qiw' size='340' side='right'caption='[[4qiw]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4qiw]] is a 22 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermococcus_kodakarensis Thermococcus kodakarensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QIW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QIW FirstGlance]. <br>		<table><tr><td colspan='2'>[[4qiw]] is a 22 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermococcus_kodakarensis Thermococcus kodakarensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QIW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QIW FirstGlance]. <br>
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qiw OCA], [http://pdbe.org/4qiw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4qiw RCSB], [http://www.ebi.ac.uk/pdbsum/4qiw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4qiw ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qiw OCA], [http://pdbe.org/4qiw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4qiw RCSB], [http://www.ebi.ac.uk/pdbsum/4qiw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4qiw ProSAT]</span></td></tr>
	</table>		</table>
-	{{Large structure}}
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/RPOP_THEKO RPOP_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOA2_THEKO RPOA2_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOH_THEKO RPOH_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOL_THEKO RPOL_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOK_THEKO RPOK_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOD_THEKO RPOD_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPON_THEKO RPON_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.		[[http://www.uniprot.org/uniprot/RPOP_THEKO RPOP_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOA2_THEKO RPOA2_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOH_THEKO RPOH_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOL_THEKO RPOL_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOK_THEKO RPOK_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOD_THEKO RPOD_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPON_THEKO RPON_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
Line 28:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: DNA-directed RNA polymerase]]		[[Category: DNA-directed RNA polymerase]]
		+	[[Category: Large Structures]]
	[[Category: Thermococcus kodakarensis]]		[[Category: Thermococcus kodakarensis]]
	[[Category: Jun, S H]]		[[Category: Jun, S H]]

OCA at 03:08, 5 August 2016

2016-08-05T03:08:17Z

←Older revision		Revision as of 03:08, 5 August 2016
Line 1:		Line 1:
		+	{{Large structure}}
	==Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis==		==Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis==
	<StructureSection load='4qiw' size='340' side='right' caption='[[4qiw]], [[Resolution\|resolution]] 3.50Å' scene=''>		<StructureSection load='4qiw' size='340' side='right' caption='[[4qiw]], [[Resolution\|resolution]] 3.50Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qiw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qiw RCSB], [http://www.ebi.ac.uk/pdbsum/4qiw PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qiw OCA], [http://pdbe.org/4qiw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4qiw RCSB], [http://www.ebi.ac.uk/pdbsum/4qiw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4qiw ProSAT]</span></td></tr>
	</table>		</table>
		+	{{Large structure}}
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/RPOP_THEKO RPOP_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOA2_THEKO RPOA2_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOH_THEKO RPOH_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOL_THEKO RPOL_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOK_THEKO RPOK_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOD_THEKO RPOD_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPON_THEKO RPON_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.		[[http://www.uniprot.org/uniprot/RPOP_THEKO RPOP_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOA2_THEKO RPOA2_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOH_THEKO RPOH_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOL_THEKO RPOL_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOK_THEKO RPOK_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOD_THEKO RPOD_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPON_THEKO RPON_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
Line 17:		Line 19:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4qiw" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[RNA polymerase\|RNA polymerase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 22:21, 24 December 2014

2014-12-24T22:21:38Z

←Older revision		Revision as of 22:21, 24 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qiw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qiw RCSB], [http://www.ebi.ac.uk/pdbsum/4qiw PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qiw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qiw RCSB], [http://www.ebi.ac.uk/pdbsum/4qiw PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RPOP_THEKO RPOP_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOA2_THEKO RPOA2_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOH_THEKO RPOH_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOL_THEKO RPOL_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOK_THEKO RPOK_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOD_THEKO RPOD_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPON_THEKO RPON_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 06:16, 26 November 2014

2014-11-26T06:16:02Z

←Older revision		Revision as of 06:16, 26 November 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qiw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qiw RCSB], [http://www.ebi.ac.uk/pdbsum/4qiw PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qiw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qiw RCSB], [http://www.ebi.ac.uk/pdbsum/4qiw PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The archaeal transcription apparatus is closely related to the eukaryotic RNA polymerase II (Pol II) system. Archaeal RNA polymerase (RNAP) and Pol II evolved from a common ancestral structure and the euryarchaeal RNAP is the simplest member of the extant archaeal-eukaryotic RNAP family. Here we report the first crystal structure of euryarchaeal RNAP from Thermococcus kodakarensis (Tko). This structure reveals that the clamp domain is able to swing away from the main body of RNAP in the presence of the Rpo4/Rpo7 stalk by coordinated movements of these domains. More detailed structure-function analysis of yeast Pol II and Tko RNAP identifies structural additions to Pol II that correspond to the binding sites of Pol II-specific general transcription factors including TFIIF, TFIIH and Mediator. Such comparisons provide a framework for dissecting interactions between RNAP and these factors during formation of the pre-initiation complex.
		+
		+	The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration.,Jun SH, Hirata A, Kanai T, Santangelo TJ, Imanaka T, Murakami KS Nat Commun. 2014 Oct 14;5:5132. doi: 10.1038/ncomms6132. PMID:25311937<ref>PMID:25311937</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: DNA-directed RNA polymerase]]		[[Category: DNA-directed RNA polymerase]]
	[[Category: Thermococcus kodakarensis]]		[[Category: Thermococcus kodakarensis]]
-	[[Category: Jun, S H.]]	+	[[Category: Jun, S H]]
-	[[Category: Murakami, K S.]]	+	[[Category: Murakami, K S]]
	[[Category: Dna-directed rna polymerase]]		[[Category: Dna-directed rna polymerase]]
	[[Category: Transcription]]		[[Category: Transcription]]

OCA at 07:53, 8 October 2014

2014-10-08T07:53:33Z

←Older revision		Revision as of 07:53, 8 October 2014
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis==
-		+	<StructureSection load='4qiw' size='340' side='right' caption='[[4qiw]], [[Resolution\|resolution]] 3.50Å' scene=''>
-	~~The entry~~ 4qiw is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4qiw]] is a 22 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermococcus_kodakarensis Thermococcus kodakarensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QIW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QIW FirstGlance]. <br>
-	~~Authors~~: ~~Jun~~, S-.H., ~~Murakami~~, K.S.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] </span></td></tr>
-	~~Description~~: ~~Crystal structure of euryarchaeal~~ RNA polymerase ~~from~~ Thermococcus kodakarensis	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qiw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qiw RCSB], [http://www.ebi.ac.uk/pdbsum/4qiw PDBsum]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: DNA-directed RNA polymerase]]
		+	[[Category: Thermococcus kodakarensis]]
		+	[[Category: Jun, S H.]]
		+	[[Category: Murakami, K S.]]
		+	[[Category: Dna-directed rna polymerase]]
		+	[[Category: Transcription]]

OCA: Protected "4qiw" [edit=sysop:move=sysop]

2014-06-11T08:07:37Z

Protected "4qiw" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:07, 11 June 2014

OCA: New page: '''Unreleased structure''' The entry 4qiw is ON HOLD Authors: Jun, S-.H., Murakami, K.S. Description: Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis

2014-06-11T08:07:36Z

New page: '''Unreleased structure''' The entry 4qiw is ON HOLD Authors: Jun, S-.H., Murakami, K.S. Description: Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis

New page

'''Unreleased structure'''

The entry 4qiw is ON HOLD

Authors: Jun, S-.H., Murakami, K.S.

Description: Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis