4rw2 - Revision history

OCA at 17:57, 20 September 2023

2023-09-20T17:57:14Z

←Older revision		Revision as of 17:57, 20 September 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4rw2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RW2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RW2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4rw2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RW2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RW2 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4rw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rw2 OCA], [https://pdbe.org/4rw2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4rw2 RCSB], [https://www.ebi.ac.uk/pdbsum/4rw2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4rw2 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4rw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rw2 OCA], [https://pdbe.org/4rw2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4rw2 RCSB], [https://www.ebi.ac.uk/pdbsum/4rw2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4rw2 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:30, 8 March 2023

2023-03-08T08:30:51Z

←Older revision		Revision as of 08:30, 8 March 2023
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	<StructureSection load='4rw2' size='340' side='right'caption='[[4rw2]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='4rw2' size='340' side='right'caption='[[4rw2]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4rw2]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RW2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4RW2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4rw2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RW2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RW2 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4rw1\|4rw1]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4rw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rw2 OCA], [https://pdbe.org/4rw2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4rw2 RCSB], [https://www.ebi.ac.uk/pdbsum/4rw2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4rw2 ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4rw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rw2 OCA], [~~http~~://pdbe.org/4rw2 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4rw2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4rw2 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4rw2 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>	+	[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 29:		Line 27:
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Barends T]]
-	[[Category: Barends, T]]	+	[[Category: Boutet S]]
-	[[Category: Boutet, S]]	+	[[Category: Doak RB]]
-	[[Category: Doak~~, R B~~]]	+	[[Category: Foucar L]]
-	[[Category: Foucar, L]]	+	[[Category: Koglin JE]]
-	[[Category: Koglin~~, J E~~]]	+	[[Category: Messerschmidt M]]
-	[[Category: Messerschmidt, M]]	+	[[Category: Nass K]]
-	[[Category: Nass, K]]	+	[[Category: Schlichting I]]
-	[[Category: Schlichting, I]]	+	[[Category: Shoeman R]]
-	[[Category: Shoeman, R]]	+	[[Category: Williams GJ]]
-	[[Category: Williams~~, G J]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 08:22, 19 February 2020

2020-02-19T08:22:14Z

←Older revision		Revision as of 08:22, 19 February 2020
Line 1:		Line 1:

	==Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: refocused beam==		==Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: refocused beam==
-	<StructureSection load='4rw2' size='340' side='right' caption='[[4rw2]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='4rw2' size='340' side='right'caption='[[4rw2]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4rw2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RW2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4RW2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4rw2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RW2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4RW2 FirstGlance]. <br>
Line 20:		Line 20:
	</div>		</div>
	<div class="pdbe-citations 4rw2" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4rw2" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 25:		Line 28:
	</StructureSection>		</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Barends, T]]		[[Category: Barends, T]]

OCA at 02:00, 10 March 2017

2017-03-10T02:00:00Z

←Older revision		Revision as of 02:00, 10 March 2017
Line 1:		Line 1:
		+
	==Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: refocused beam==		==Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: refocused beam==
	<StructureSection load='4rw2' size='340' side='right' caption='[[4rw2]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='4rw2' size='340' side='right' caption='[[4rw2]], [[Resolution\|resolution]] 2.30Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4rw1\|4rw1]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4rw1\|4rw1]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4rw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rw2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4rw2 RCSB], [http://www.ebi.ac.uk/pdbsum/4rw2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4rw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rw2 OCA], [http://pdbe.org/4rw2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4rw2 RCSB], [http://www.ebi.ac.uk/pdbsum/4rw2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4rw2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4rw2" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:12, 20 May 2015

2015-05-20T12:12:15Z

←Older revision		Revision as of 12:12, 20 May 2015
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	==Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: refocused beam==
		+	<StructureSection load='4rw2' size='340' side='right' caption='[[4rw2]], [[Resolution\|resolution]] 2.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4rw2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RW2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4RW2 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4rw1\|4rw1]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4rw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rw2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4rw2 RCSB], [http://www.ebi.ac.uk/pdbsum/4rw2 PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	X-ray free-electron laser sources such as the Linac Coherent Light Source offer very exciting possibilities for unique research. However, beam time at such facilities is very limited and in high demand. This has led to significant efforts towards beam multiplexing of various forms. One such effort involves re-using the so-called spent beam that passes through the hole in an area detector after a weak interaction with a primary sample. This beam can be refocused into a secondary interaction region and used for a second, independent experiment operating in series. The beam profile of this refocused beam was characterized for a particular experimental geometry at the Coherent X-ray Imaging instrument at LCLS. A demonstration of this multiplexing capability was performed with two simultaneous serial femtosecond crystallography experiments, both yielding interpretable data of sufficient quality to produce electron density maps.

-	~~The entry 4rw2 is ON HOLD until Paper Publication~~	+	Characterization and use of the spent beam for serial operation of LCLS.,Boutet S, Foucar L, Barends TR, Botha S, Doak RB, Koglin JE, Messerschmidt M, Nass K, Schlichting I, Seibert MM, Shoeman RL, Williams GJ J Synchrotron Radiat. 2015 May 1;22(Pt 3):634-43. doi: 10.1107/S1600577515004002., Epub 2015 Apr 11. PMID:25931079<ref>PMID:25931079</ref>

-	~~Authors: Boutet~~, S.~~, Foucar, L., Barends, T., Doak, R.B., Koglin, J.E., Messerschmidt, M., Nass, K., Schlichting, I., Shoeman, R., Williams, G.J~~.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description: Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: refocused beam~~	+	== References ==
-	~~[[Category: Unreleased Structures]]~~	+	<references/>
-	~~[[Category: Nass, K]]~~	+	__TOC__
-	~~[[Category: Shoeman, R]]~~	+	</StructureSection>
-	[[Category: ~~Koglin, J.E~~]]	+	[[Category: Gallus gallus]]
-	[[Category: ~~Williams, G.J~~]]	+	[[Category: Lysozyme]]
	[[Category: Barends, T]]		[[Category: Barends, T]]
	[[Category: Boutet, S]]		[[Category: Boutet, S]]
		+	[[Category: Doak, R B]]
		+	[[Category: Foucar, L]]
		+	[[Category: Koglin, J E]]
	[[Category: Messerschmidt, M]]		[[Category: Messerschmidt, M]]
-	[[Category: ~~Foucar~~, ~~L]]~~	+	[[Category: Nass, K]]
-	~~[[Category: Doak, R.B~~]]	+
	[[Category: Schlichting, I]]		[[Category: Schlichting, I]]
		+	[[Category: Shoeman, R]]
		+	[[Category: Williams, G J]]
		+	[[Category: Hydrolase]]

OCA at 10:51, 14 January 2015

2015-01-14T10:51:55Z

←Older revision		Revision as of 10:51, 14 January 2015
Line 3:		Line 3:
	The entry 4rw2 is ON HOLD until Paper Publication		The entry 4rw2 is ON HOLD until Paper Publication

-	Authors: Boutet, S., Foucar, L., Barends, T., Doak, R.B., Koglin, J.E., Messerschmidt, M., Nass, K., Schlichting I., Shoeman R., Williams, G.J.	+	Authors: Boutet, S., Foucar, L., Barends, T., Doak, R.B., Koglin, J.E., Messerschmidt, M., Nass, K., Schlichting, I., Shoeman, R., Williams, G.J.

	Description: Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: refocused beam		Description: Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: refocused beam
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Shoeman R]]
	[[Category: Nass, K]]		[[Category: Nass, K]]
-	[[Category: ~~Schlichting I~~]]	+	[[Category: Shoeman, R]]
	[[Category: Koglin, J.E]]		[[Category: Koglin, J.E]]
	[[Category: Williams, G.J]]		[[Category: Williams, G.J]]
Line 17:		Line 16:
	[[Category: Foucar, L]]		[[Category: Foucar, L]]
	[[Category: Doak, R.B]]		[[Category: Doak, R.B]]
		+	[[Category: Schlichting, I]]

OCA at 12:11, 31 December 2014

2014-12-31T12:11:35Z

←Older revision		Revision as of 12:11, 31 December 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4rw2 is ON HOLD	+	The entry 4rw2 is ON HOLD until Paper Publication

	Authors: Boutet, S., Foucar, L., Barends, T., Doak, R.B., Koglin, J.E., Messerschmidt, M., Nass, K., Schlichting I., Shoeman R., Williams, G.J.		Authors: Boutet, S., Foucar, L., Barends, T., Doak, R.B., Koglin, J.E., Messerschmidt, M., Nass, K., Schlichting I., Shoeman R., Williams, G.J.

OCA at 17:29, 24 December 2014

2014-12-24T17:29:51Z

←Older revision		Revision as of 17:29, 24 December 2014
Line 6:		Line 6:

	Description: Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: refocused beam		Description: Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: refocused beam
		+	[[Category: Unreleased Structures]]
		+	[[Category: Shoeman R]]
		+	[[Category: Nass, K]]
		+	[[Category: Schlichting I]]
		+	[[Category: Koglin, J.E]]
		+	[[Category: Williams, G.J]]
		+	[[Category: Barends, T]]
		+	[[Category: Boutet, S]]
		+	[[Category: Messerschmidt, M]]
		+	[[Category: Foucar, L]]
		+	[[Category: Doak, R.B]]

OCA: Protected "4rw2" [edit=sysop:move=sysop]

2014-12-10T13:33:29Z

Protected "4rw2" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:33, 10 December 2014

OCA: New page: '''Unreleased structure''' The entry 4rw2 is ON HOLD Authors: Boutet, S., Foucar, L., Barends, T., Doak, R.B., Koglin, J.E., Messerschmidt, M., Nass, K., Schlichting I., Shoeman R., Wil...

2014-12-10T13:33:28Z

New page: '''Unreleased structure''' The entry 4rw2 is ON HOLD Authors: Boutet, S., Foucar, L., Barends, T., Doak, R.B., Koglin, J.E., Messerschmidt, M., Nass, K., Schlichting I., Shoeman R., Wil...

New page

'''Unreleased structure'''

The entry 4rw2 is ON HOLD

Authors: Boutet, S., Foucar, L., Barends, T., Doak, R.B., Koglin, J.E., Messerschmidt, M., Nass, K., Schlichting I., Shoeman R., Williams, G.J.

Description: Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: refocused beam