4s0w - Revision history

OCA at 18:00, 20 September 2023

2023-09-20T18:00:51Z

←Older revision		Revision as of 18:00, 20 September 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4s0w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S0W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4S0W FirstGlance]. <br>		<table><tr><td colspan='2'>[[4s0w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S0W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4S0W FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.117Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4s0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0w OCA], [https://pdbe.org/4s0w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4s0w RCSB], [https://www.ebi.ac.uk/pdbsum/4s0w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0w ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4s0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0w OCA], [https://pdbe.org/4s0w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4s0w RCSB], [https://www.ebi.ac.uk/pdbsum/4s0w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0w ProSAT]</span></td></tr>
	</table>		</table>

OCA at 10:38, 15 March 2023

2023-03-15T10:38:20Z

←Older revision		Revision as of 10:38, 15 March 2023
Line 3:		Line 3:
	<StructureSection load='4s0w' size='340' side='right'caption='[[4s0w]], [[Resolution\|resolution]] 2.12Å' scene=''>		<StructureSection load='4s0w' size='340' side='right'caption='[[4s0w]], [[Resolution\|resolution]] 2.12Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4s0w]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Bpt4 Bpt4~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S0W OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4S0W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4s0w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S0W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4S0W FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">e, T4Tp126 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4s0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0w OCA], [https://pdbe.org/4s0w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4s0w RCSB], [https://www.ebi.ac.uk/pdbsum/4s0w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0w ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4s0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0w OCA], [~~http~~://pdbe.org/4s0w PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4s0w RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4s0w PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0w ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref>

	==See Also==		==See Also==
	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]		*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bpt4~~]]	+	[[Category: Escherichia virus T4]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Snell EH]]
-	[[Category: Snell~~, E H~~]]	+	[[Category: Snell ME]]
-	[[Category: Snell~~, M E]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 10:30, 1 May 2019

2019-05-01T10:30:48Z

←Older revision		Revision as of 10:30, 1 May 2019
Line 1:		Line 1:

	==Wild type T4 lysozyme structure==		==Wild type T4 lysozyme structure==
-	<StructureSection load='4s0w' size='340' side='right' caption='[[4s0w]], [[Resolution\|resolution]] 2.12Å' scene=''>	+	<StructureSection load='4s0w' size='340' side='right'caption='[[4s0w]], [[Resolution\|resolution]] 2.12Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4s0w]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S0W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4S0W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4s0w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S0W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4S0W FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">e, T4Tp126 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0w OCA], [http://pdbe.org/4s0w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4s0w RCSB], [http://www.ebi.ac.uk/pdbsum/4s0w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0w ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0w OCA], [http://pdbe.org/4s0w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4s0w RCSB], [http://www.ebi.ac.uk/pdbsum/4s0w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0w ProSAT]</span></td></tr>
	</table>		</table>
		+
		+	==See Also==
		+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bpt4]]
		+	[[Category: Large Structures]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Snell, E H]]		[[Category: Snell, E H]]
	[[Category: Snell, M E]]		[[Category: Snell, M E]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 09:31, 2 January 2017

2017-01-02T09:31:07Z

←Older revision		Revision as of 09:31, 2 January 2017
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0w OCA], [http://pdbe.org/4s0w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4s0w RCSB], [http://www.ebi.ac.uk/pdbsum/4s0w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0w ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0w OCA], [http://pdbe.org/4s0w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4s0w RCSB], [http://www.ebi.ac.uk/pdbsum/4s0w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0w ProSAT]</span></td></tr>
	</table>		</table>
-	== Function ==
-	[[http://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4]] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 13:59, 11 August 2016

2016-08-11T13:59:28Z

←Older revision		Revision as of 13:59, 11 August 2016
Line 1:		Line 1:
		+
	==Wild type T4 lysozyme structure==		==Wild type T4 lysozyme structure==
	<StructureSection load='4s0w' size='340' side='right' caption='[[4s0w]], [[Resolution\|resolution]] 2.12Å' scene=''>		<StructureSection load='4s0w' size='340' side='right' caption='[[4s0w]], [[Resolution\|resolution]] 2.12Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4s0w RCSB], [http://www.ebi.ac.uk/pdbsum/4s0w PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0w OCA], [http://pdbe.org/4s0w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4s0w RCSB], [http://www.ebi.ac.uk/pdbsum/4s0w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0w ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 15:59, 7 February 2015

2015-02-07T15:59:02Z

←Older revision		Revision as of 15:59, 7 February 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Wild type T4 lysozyme structure==
-		+	<StructureSection load='4s0w' size='340' side='right' caption='[[4s0w]], [[Resolution\|resolution]] 2.12Å' scene=''>
-	~~The entry~~ 4s0w is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4s0w]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S0W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4S0W FirstGlance]. <br>
-	~~Authors~~: ~~Snell~~, E.H., ~~Snell~~, M.E.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	~~Description~~: ~~Wild type T4~~ lysozyme ~~structure~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4s0w RCSB], [http://www.ebi.ac.uk/pdbsum/4s0w PDBsum]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
-	[[Category: Snell, E.H]]	+	== Function ==
-	[[Category: Snell, M.E]]	+	[[http://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4]] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Lysozyme]]
		+	[[Category: Snell, E H]]
		+	[[Category: Snell, M E]]
		+	[[Category: Hydrolase]]

OCA: Protected "4s0w" [edit=sysop:move=sysop]

2015-01-14T10:58:45Z

Protected "4s0w" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:58, 14 January 2015

OCA: New page: '''Unreleased structure''' The entry 4s0w is ON HOLD Authors: Snell, E.H., Snell, M.E. Description: Wild type T4 lysozyme structure Category: Unreleased Structures [[Category: Snel...

2015-01-14T10:58:44Z

New page: '''Unreleased structure''' The entry 4s0w is ON HOLD Authors: Snell, E.H., Snell, M.E. Description: Wild type T4 lysozyme structure Category: Unreleased Structures [[Category: Snel...

New page

'''Unreleased structure'''

The entry 4s0w is ON HOLD

Authors: Snell, E.H., Snell, M.E.

Description: Wild type T4 lysozyme structure
[[Category: Unreleased Structures]]
[[Category: Snell, E.H]]
[[Category: Snell, M.E]]