4s14 - Revision history

OCA at 10:38, 15 March 2023

2023-03-15T10:38:31Z

←Older revision		Revision as of 10:38, 15 March 2023
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	<StructureSection load='4s14' size='340' side='right'caption='[[4s14]], [[Resolution\|resolution]] 3.54Å' scene=''>		<StructureSection load='4s14' size='340' side='right'caption='[[4s14]], [[Resolution\|resolution]] 3.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4s14]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S14 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4S14 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4s14]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S14 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4S14 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4D8:(3BETA,4ALPHA,5BETA,14BETA)-3-HYDROXY-4-METHYLCHOLESTA-8,24-DIENE-4-CARBOXYLIC+ACID'>4D8</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4D8:(3BETA,4ALPHA,5BETA,14BETA)-3-HYDROXY-4-METHYLCHOLESTA-8,24-DIENE-4-CARBOXYLIC+ACID'>4D8</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4s15\|4s15]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4s14 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s14 OCA], [https://pdbe.org/4s14 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4s14 RCSB], [https://www.ebi.ac.uk/pdbsum/4s14 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4s14 ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NR1F3, RORC, RORG, RZRG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4s14 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s14 OCA], [~~http~~://pdbe.org/4s14 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4s14 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4s14 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4s14 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/RORG_HUMAN RORG_HUMAN]] Possible nuclear receptor for hydroxycholesterols, the binding of which strongly promotes coactivators recruitment. Essential for thymopoiesis and the development of several secondary lymphoid tissues, including lymph nodes. Involved in lineage specification of uncommitted CD4(+) T-helper cells into Th17 cells. Regulate the expression of several components of the circadian clock. [[http://www.uniprot.org/uniprot/NRIP1_HUMAN NRIP1_HUMAN]] Modulates transcriptional activation by steroid receptors such as NR3C1, NR3C2 and ESR1. Also modulates transcriptional repression by nuclear hormone receptors.<ref>PMID:7641693</ref> <ref>PMID:10364267</ref> <ref>PMID:11509661</ref> <ref>PMID:11518808</ref> <ref>PMID:12554755</ref> <ref>PMID:15060175</ref>	+	[https://www.uniprot.org/uniprot/RORG_HUMAN RORG_HUMAN] Possible nuclear receptor for hydroxycholesterols, the binding of which strongly promotes coactivators recruitment. Essential for thymopoiesis and the development of several secondary lymphoid tissues, including lymph nodes. Involved in lineage specification of uncommitted CD4(+) T-helper cells into Th17 cells. Regulate the expression of several components of the circadian clock.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Huang, P]]	+	[[Category: Huang P]]
-	[[Category: Littman~~, D R~~]]	+	[[Category: Littman DR]]
-	[[Category: Rastinejad, F]]	+	[[Category: Rastinejad F]]
-	[[Category: Santori~~, F R]]~~	+	[[Category: Santori FR]]
-	~~[[Category: Transcription]]~~	+
-	~~[[Category: Transcription factor~~]]	+

OCA at 09:50, 1 May 2019

2019-05-01T09:50:49Z

←Older revision		Revision as of 09:50, 1 May 2019
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	==Crystal structure of the orphan nuclear receptor RORgamma ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8)==		==Crystal structure of the orphan nuclear receptor RORgamma ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8)==
-	<StructureSection load='4s14' size='340' side='right' caption='[[4s14]], [[Resolution\|resolution]] 3.54Å' scene=''>	+	<StructureSection load='4s14' size='340' side='right'caption='[[4s14]], [[Resolution\|resolution]] 3.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4s14]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S14 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4S14 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4s14]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S14 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4S14 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4D8:(3BETA,4ALPHA,5BETA,14BETA)-3-HYDROXY-4-METHYLCHOLESTA-8,24-DIENE-4-CARBOXYLIC+ACID'>4D8</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4D8:(3BETA,4ALPHA,5BETA,14BETA)-3-HYDROXY-4-METHYLCHOLESTA-8,24-DIENE-4-CARBOXYLIC+ACID'>4D8</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4s15\|4s15]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4s15\|4s15]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NR1F3, RORC, RORG, RZRG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s14 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s14 OCA], [http://pdbe.org/4s14 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4s14 RCSB], [http://www.ebi.ac.uk/pdbsum/4s14 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4s14 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s14 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s14 OCA], [http://pdbe.org/4s14 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4s14 RCSB], [http://www.ebi.ac.uk/pdbsum/4s14 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4s14 ProSAT]</span></td></tr>
	</table>		</table>
Line 23:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Huang, P]]		[[Category: Huang, P]]
	[[Category: Littman, D R]]		[[Category: Littman, D R]]

OCA at 01:15, 19 January 2017

2017-01-19T01:15:06Z

←Older revision		Revision as of 01:15, 19 January 2017
Line 1:		Line 1:
		+
	==Crystal structure of the orphan nuclear receptor RORgamma ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8)==		==Crystal structure of the orphan nuclear receptor RORgamma ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8)==
	<StructureSection load='4s14' size='340' side='right' caption='[[4s14]], [[Resolution\|resolution]] 3.54Å' scene=''>		<StructureSection load='4s14' size='340' side='right' caption='[[4s14]], [[Resolution\|resolution]] 3.54Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4D8:(3BETA,4ALPHA,5BETA,14BETA)-3-HYDROXY-4-METHYLCHOLESTA-8,24-DIENE-4-CARBOXYLIC+ACID'>4D8</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4D8:(3BETA,4ALPHA,5BETA,14BETA)-3-HYDROXY-4-METHYLCHOLESTA-8,24-DIENE-4-CARBOXYLIC+ACID'>4D8</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4s15\|4s15]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4s15\|4s15]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s14 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s14 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4s14 RCSB], [http://www.ebi.ac.uk/pdbsum/4s14 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s14 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s14 OCA], [http://pdbe.org/4s14 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4s14 RCSB], [http://www.ebi.ac.uk/pdbsum/4s14 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4s14 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4s14" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:04, 25 February 2015

2015-02-25T08:04:34Z

←Older revision		Revision as of 08:04, 25 February 2015
Line 9:		Line 9:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/RORG_HUMAN RORG_HUMAN]] Possible nuclear receptor for hydroxycholesterols, the binding of which strongly promotes coactivators recruitment. Essential for thymopoiesis and the development of several secondary lymphoid tissues, including lymph nodes. Involved in lineage specification of uncommitted CD4(+) T-helper cells into Th17 cells. Regulate the expression of several components of the circadian clock. [[http://www.uniprot.org/uniprot/NRIP1_HUMAN NRIP1_HUMAN]] Modulates transcriptional activation by steroid receptors such as NR3C1, NR3C2 and ESR1. Also modulates transcriptional repression by nuclear hormone receptors.<ref>PMID:7641693</ref> <ref>PMID:10364267</ref> <ref>PMID:11509661</ref> <ref>PMID:11518808</ref> <ref>PMID:12554755</ref> <ref>PMID:15060175</ref>		[[http://www.uniprot.org/uniprot/RORG_HUMAN RORG_HUMAN]] Possible nuclear receptor for hydroxycholesterols, the binding of which strongly promotes coactivators recruitment. Essential for thymopoiesis and the development of several secondary lymphoid tissues, including lymph nodes. Involved in lineage specification of uncommitted CD4(+) T-helper cells into Th17 cells. Regulate the expression of several components of the circadian clock. [[http://www.uniprot.org/uniprot/NRIP1_HUMAN NRIP1_HUMAN]] Modulates transcriptional activation by steroid receptors such as NR3C1, NR3C2 and ESR1. Also modulates transcriptional repression by nuclear hormone receptors.<ref>PMID:7641693</ref> <ref>PMID:10364267</ref> <ref>PMID:11509661</ref> <ref>PMID:11518808</ref> <ref>PMID:12554755</ref> <ref>PMID:15060175</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Mice deficient in the nuclear hormone receptor RORgammat have defective development of thymocytes, lymphoid organs, Th17 cells, and type 3 innate lymphoid cells. RORgammat binds to oxysterols derived from cholesterol catabolism, but it is not clear whether these are its natural ligands. Here, we show that sterol lipids are necessary and sufficient to drive RORgammat-dependent transcription. We combined overexpression, RNAi, and genetic deletion of metabolic enzymes to study RORgamma-dependent transcription. Our results are consistent with the RORgammat ligand(s) being a cholesterol biosynthetic intermediate (CBI) downstream of lanosterol and upstream of zymosterol. Analysis of lipids bound to RORgamma identified molecules with molecular weights consistent with CBIs. Furthermore, CBIs stabilized the RORgamma ligand-binding domain and induced coactivator recruitment. Genetic deletion of metabolic enzymes upstream of the RORgammat-ligand(s) affected the development of lymph nodes and Th17 cells. Our data suggest that CBIs play a role in lymphocyte development potentially through regulation of RORgammat.
		+
		+	Identification of Natural RORgamma Ligands that Regulate the Development of Lymphoid Cells.,Santori FR, Huang P, van de Pavert SA, Douglass EF Jr, Leaver DJ, Haubrich BA, Keber R, Lorbek G, Konijn T, Rosales BN, Rozman D, Horvat S, Rahier A, Mebius RE, Rastinejad F, Nes WD, Littman DR Cell Metab. 2015 Feb 3;21(2):286-97. doi: 10.1016/j.cmet.2015.01.004. PMID:25651181<ref>PMID:25651181</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:00, 12 February 2015

2015-02-12T12:00:09Z

←Older revision		Revision as of 12:00, 12 February 2015
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	==Crystal structure of the orphan nuclear receptor RORgamma ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8)==
-		+	<StructureSection load='4s14' size='340' side='right' caption='[[4s14]], [[Resolution\|resolution]] 3.54Å' scene=''>
-	~~The entry 4s14 is ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4s14]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S14 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4S14 FirstGlance]. <br>
-	~~Authors: Huang, P., Santori, F.R., Littman, D.R., Rastinejad, F.~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4D8:(3BETA,4ALPHA,5BETA,14BETA)-3-HYDROXY-4-METHYLCHOLESTA-8,24-DIENE-4-CARBOXYLIC+ACID'>4D8</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4s15\|4s15]]</td></tr>
-	~~Description:~~ Crystal structure of the orphan nuclear receptor RORgamma ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8)	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s14 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s14 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4s14 RCSB], [http://www.ebi.ac.uk/pdbsum/4s14 PDBsum]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[~~Category~~: ~~Santori~~, ~~F.R~~]]	+	== Function ==
-	[[~~Category~~: ~~Littman~~, D.R]]	+	[[http://www.uniprot.org/uniprot/RORG_HUMAN RORG_HUMAN]] Possible nuclear receptor for hydroxycholesterols, the binding of which strongly promotes coactivators recruitment. Essential for thymopoiesis and the development of several secondary lymphoid tissues, including lymph nodes. Involved in lineage specification of uncommitted CD4(+) T-helper cells into Th17 cells. Regulate the expression of several components of the circadian clock. [[http://www.uniprot.org/uniprot/NRIP1_HUMAN NRIP1_HUMAN]] Modulates transcriptional activation by steroid receptors such as NR3C1, NR3C2 and ESR1. Also modulates transcriptional repression by nuclear hormone receptors.<ref>PMID:7641693</ref> <ref>PMID:10364267</ref> <ref>PMID:11509661</ref> <ref>PMID:11518808</ref> <ref>PMID:12554755</ref> <ref>PMID:15060175</ref>
-	[[~~Category~~: ~~Rastinejad~~, F]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Huang, P]]		[[Category: Huang, P]]
		+	[[Category: Littman, D R]]
		+	[[Category: Rastinejad, F]]
		+	[[Category: Santori, F R]]
		+	[[Category: Transcription]]
		+	[[Category: Transcription factor]]

OCA at 12:51, 7 February 2015

2015-02-07T12:51:01Z

←Older revision		Revision as of 12:51, 7 February 2015
Line 3:		Line 3:
	The entry 4s14 is ON HOLD		The entry 4s14 is ON HOLD

-	Authors: Huang, P, Santori, F.R., Littman, D.R., Rastinejad, F	+	Authors: Huang, P., Santori, F.R., Littman, D.R., Rastinejad, F.

	Description: Crystal structure of the orphan nuclear receptor RORgamma ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8)		Description: Crystal structure of the orphan nuclear receptor RORgamma ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8)
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
		+	[[Category: Santori, F.R]]
	[[Category: Littman, D.R]]		[[Category: Littman, D.R]]
-	[[Category: Huang, P, Santori, F.R]]
	[[Category: Rastinejad, F]]		[[Category: Rastinejad, F]]
		+	[[Category: Huang, P]]

OCA: Protected "4s14" [edit=sysop:move=sysop]

2015-01-14T10:59:35Z

Protected "4s14" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:59, 14 January 2015

OCA: New page: '''Unreleased structure''' The entry 4s14 is ON HOLD Authors: Huang, P, Santori, F.R., Littman, D.R., Rastinejad, F Description: Crystal structure of the orphan nuclear receptor RORgam...

2015-01-14T10:59:34Z

New page: '''Unreleased structure''' The entry 4s14 is ON HOLD Authors: Huang, P, Santori, F.R., Littman, D.R., Rastinejad, F Description: Crystal structure of the orphan nuclear receptor RORgam...

New page

'''Unreleased structure'''

The entry 4s14 is ON HOLD

Authors: Huang, P, Santori, F.R., Littman, D.R., Rastinejad, F

Description: Crystal structure of the orphan nuclear receptor RORgamma ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8)
[[Category: Unreleased Structures]]
[[Category: Littman, D.R]]
[[Category: Huang, P, Santori, F.R]]
[[Category: Rastinejad, F]]