4u7q - Revision history

OCA at 12:27, 20 December 2023

2023-12-20T12:27:20Z

←Older revision		Revision as of 12:27, 20 December 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4u7q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U7Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4U7Q FirstGlance]. <br>		<table><tr><td colspan='2'>[[4u7q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U7Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4U7Q FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3EM:N~2~-({[7-(DIETHYLAMINO)-2-OXO-2H-CHROMEN-4-YL]METHOXY}CARBONYL)-N-[(2S,4S,5S)-4-HYDROXY-1,6-DIPHENYL-5-{[(1,3-THIAZOL-5-YLMETHOXY)CARBONYL]AMINO}HEXAN-2-YL]-L-VALINAMIDE'>3EM</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3EM:N~2~-({[7-(DIETHYLAMINO)-2-OXO-2H-CHROMEN-4-YL]METHOXY}CARBONYL)-N-[(2S,4S,5S)-4-HYDROXY-1,6-DIPHENYL-5-{[(1,3-THIAZOL-5-YLMETHOXY)CARBONYL]AMINO}HEXAN-2-YL]-L-VALINAMIDE'>3EM</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4u7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u7q OCA], [https://pdbe.org/4u7q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4u7q RCSB], [https://www.ebi.ac.uk/pdbsum/4u7q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4u7q ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4u7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u7q OCA], [https://pdbe.org/4u7q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4u7q RCSB], [https://www.ebi.ac.uk/pdbsum/4u7q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4u7q ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:07, 22 March 2023

2023-03-22T08:07:17Z

←Older revision		Revision as of 08:07, 22 March 2023
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	<StructureSection load='4u7q' size='340' side='right'caption='[[4u7q]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='4u7q' size='340' side='right'caption='[[4u7q]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4u7q]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~9hiv1 9hiv1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U7Q OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4U7Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4u7q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U7Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4U7Q FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3EM:N~2~-({[7-(DIETHYLAMINO)-2-OXO-2H-CHROMEN-4-YL]METHOXY}CARBONYL)-N-[(2S,4S,5S)-4-HYDROXY-1,6-DIPHENYL-5-{[(1,3-THIAZOL-5-YLMETHOXY)CARBONYL]AMINO}HEXAN-2-YL]-L-VALINAMIDE'>3EM</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3EM:N~2~-({[7-(DIETHYLAMINO)-2-OXO-2H-CHROMEN-4-YL]METHOXY}CARBONYL)-N-[(2S,4S,5S)-4-HYDROXY-1,6-DIPHENYL-5-{[(1,3-THIAZOL-5-YLMETHOXY)CARBONYL]AMINO}HEXAN-2-YL]-L-VALINAMIDE'>3EM</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4u7v\|4u7v]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4u7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u7q OCA], [https://pdbe.org/4u7q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4u7q RCSB], [https://www.ebi.ac.uk/pdbsum/4u7q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4u7q ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ORF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 9HIV1])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4u7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u7q OCA], [~~http~~://pdbe.org/4u7q PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4u7q RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4u7q PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4u7q ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/POL_HV1H2 POL_HV1H2] Gag-Pol polyprotein and Gag polyprotein may regulate their own translation, by the binding genomic RNA in the 5'-UTR. At low concentration, Gag-Pol and Gag would promote translation, whereas at high concentration, the polyproteins encapsidate genomic RNA and then shutt off translation.<ref>PMID:8648689</ref> <ref>PMID:17041220</ref> <ref>PMID:17070549</ref> <ref>PMID:20554775</ref> Matrix protein p17 has two main functions: in infected cell, it targets Gag and Gag-pol polyproteins to the plasma membrane via a multipartite membrane-binding signal, that includes its myristoylated N-terminus. The second function is to play a role in nuclear localization of the viral genome at the very start of cell infection. Matrix protein is the part of the pre-integration complex. It binds in the cytoplasm the human BAF protein which prevent autointegration of the viral genome, and might be included in virions at the ration of zero to 3 BAF dimer per virion. The myristoylation signal and the NLS thus exert conflicting influences its subcellular localization. The key regulation of these motifs might be phosphorylation of a portion of MA molecules on the C-terminal tyrosine at the time of virus maturation, by virion-associated cellular tyrosine kinase. Implicated in the release from host cell mediated by Vpu.<ref>PMID:8648689</ref> <ref>PMID:17041220</ref> <ref>PMID:17070549</ref> <ref>PMID:20554775</ref> Capsid protein p24 forms the conical core that encapsulates the genomic RNA-nucleocapsid complex in the virion. Most core are conical, with only 7% tubular. The core is constituted by capsid protein hexamer subunits. The core is disassembled soon after virion entry. Interaction with human PPIA/CYPA protects the virus from restriction by human TRIM5-alpha and from an unknown antiviral activity in human cells. This capsid restriction by TRIM5 is one of the factors which restricts HIV-1 to the human species.<ref>PMID:8648689</ref> <ref>PMID:17041220</ref> <ref>PMID:17070549</ref> <ref>PMID:20554775</ref> Nucleocapsid protein p7 encapsulates and protects viral dimeric unspliced (genomic) RNA. Binds these RNAs through its zinc fingers. Facilitates rearangement of nucleic acid secondary structure during retrotranscription of genomic RNA. This capability is referred to as nucleic acid chaperone activity.<ref>PMID:8648689</ref> <ref>PMID:17041220</ref> <ref>PMID:17070549</ref> <ref>PMID:20554775</ref> The aspartyl protease mediates proteolytic cleavages of Gag and Gag-Pol polyproteins during or shortly after the release of the virion from the plasma membrane. Cleavages take place as an ordered, step-wise cascade to yield mature proteins. This process is called maturation. Displays maximal activity during the budding process just prior to particle release from the cell. Also cleaves Nef and Vif, probably concomitantly with viral structural proteins on maturation of virus particles (By similarity).<ref>PMID:8648689</ref> <ref>PMID:17041220</ref> <ref>PMID:17070549</ref> <ref>PMID:20554775</ref> Reverse transcriptase/ribonuclease H (RT) is a multifunctional enzyme that converts the viral RNA genome into dsDNA in the cytoplasm, shortly after virus entry into the cell. This enzyme displays a DNA polymerase activity that can copy either DNA or RNA templates, and a ribonuclease H (RNase H) activity that cleaves the RNA strand of RNA-DNA heteroduplexes in a partially processive 3' to 5' endonucleasic mode. Conversion of viral genomic RNA into dsDNA requires many steps. A tRNA(3)-Lys binds to the primer-binding site (PBS) situated at the 5'-end of the viral RNA. RT uses the 3' end of the tRNA primer to perform a short round of RNA-dependent minus-strand DNA synthesis. The reading proceeds through the U5 region and ends after the repeated (R) region which is present at both ends of viral RNA. The portion of the RNA-DNA heteroduplex is digested by the RNase H, resulting in a ssDNA product attached to the tRNA primer. This ssDNA/tRNA hybridizes with the identical R region situated at the 3' end of viral RNA. This template exchange, known as minus-strand DNA strong stop transfer, can be either intra- or intermolecular. RT uses the 3' end of this newly synthesized short ssDNA to perform the RNA-dependent minus-strand DNA synthesis of the whole template. RNase H digests the RNA template except for two polypurine tracts (PPTs) situated at the 5'-end and near the center of the genome. It is not clear if both polymerase and RNase H activities are simultaneous. RNase H probably can proceed both in a polymerase-dependent (RNA cut into small fragments by the same RT performing DNA synthesis) and a polymerase-independent mode (cleavage of remaining RNA fragments by free RTs). Secondly, RT performs DNA-directed plus-strand DNA synthesis using the PPTs that have not been removed by RNase H as primers. PPTs and tRNA primers are then removed by RNase H. The 3' and 5' ssDNA PBS regions hybridize to form a circular dsDNA intermediate. Strand displacement synthesis by RT to the PBS and PPT ends produces a blunt ended, linear dsDNA copy of the viral genome that includes long terminal repeats (LTRs) at both ends.<ref>PMID:8648689</ref> <ref>PMID:17041220</ref> <ref>PMID:17070549</ref> <ref>PMID:20554775</ref> Integrase catalyzes viral DNA integration into the host chromosome, by performing a series of DNA cutting and joining reactions. This enzyme activity takes place after virion entry into a cell and reverse transcription of the RNA genome in dsDNA. The first step in the integration process is 3' processing. This step requires a complex comprising the viral genome, matrix protein, Vpr and integrase. This complex is called the pre-integration complex (PIC). The integrase protein removes 2 nucleotides from each 3' end of the viral DNA, leaving recessed CA OH's at the 3' ends. In the second step, the PIC enters cell nucleus. This process is mediated through integrase and Vpr proteins, and allows the virus to infect a non dividing cell. This ability to enter the nucleus is specific of lentiviruses, other retroviruses cannot and rely on cell division to access cell chromosomes. In the third step, termed strand transfer, the integrase protein joins the previously processed 3' ends to the 5' ends of strands of target cellular DNA at the site of integration. The 5'-ends are produced by integrase-catalyzed staggered cuts, 5 bp apart. A Y-shaped, gapped, recombination intermediate results, with the 5'-ends of the viral DNA strands and the 3' ends of target DNA strands remaining unjoined, flanking a gap of 5 bp. The last step is viral DNA integration into host chromosome. This involves host DNA repair synthesis in which the 5 bp gaps between the unjoined strands are filled in and then ligated. Since this process occurs at both cuts flanking the HIV genome, a 5 bp duplication of host DNA is produced at the ends of HIV-1 integration. Alternatively, Integrase may catalyze the excision of viral DNA just after strand transfer, this is termed disintegration.<ref>PMID:8648689</ref> <ref>PMID:17041220</ref> <ref>PMID:17070549</ref> <ref>PMID:20554775</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 25:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human immunodeficiency virus 1]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Pachl, P]]	+	[[Category: Pachl P]]
-	[[Category: Rezacova, P]]	+	[[Category: Rezacova P]]
-	[[Category: Schimer, J]]	+	[[Category: Schimer J]]
-	~~[[Category: Aspartic protease]]~~	+
-	~~[[Category: Hiv-1]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Inhibition]]~~	+
-	~~[[Category: Viral protease~~]]	+

OCA at 15:09, 10 May 2019

2019-05-10T15:09:41Z

←Older revision		Revision as of 15:09, 10 May 2019
Line 1:		Line 1:

	==Structure of wild-type HIV protease in complex with photosensitive inhibitor PDI-6==		==Structure of wild-type HIV protease in complex with photosensitive inhibitor PDI-6==
-	<StructureSection load='4u7q' size='340' side='right' caption='[[4u7q]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='4u7q' size='340' side='right'caption='[[4u7q]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4u7q]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U7Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4U7Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4u7q]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/9hiv1 9hiv1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U7Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4U7Q FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3EM:N~2~-({[7-(DIETHYLAMINO)-2-OXO-2H-CHROMEN-4-YL]METHOXY}CARBONYL)-N-[(2S,4S,5S)-4-HYDROXY-1,6-DIPHENYL-5-{[(1,3-THIAZOL-5-YLMETHOXY)CARBONYL]AMINO}HEXAN-2-YL]-L-VALINAMIDE'>3EM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3EM:N~2~-({[7-(DIETHYLAMINO)-2-OXO-2H-CHROMEN-4-YL]METHOXY}CARBONYL)-N-[(2S,4S,5S)-4-HYDROXY-1,6-DIPHENYL-5-{[(1,3-THIAZOL-5-YLMETHOXY)CARBONYL]AMINO}HEXAN-2-YL]-L-VALINAMIDE'>3EM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4u7v\|4u7v]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4u7v\|4u7v]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ORF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 9HIV1])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4u7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u7q OCA], [http://pdbe.org/4u7q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4u7q RCSB], [http://www.ebi.ac.uk/pdbsum/4u7q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4u7q ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4u7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u7q OCA], [http://pdbe.org/4u7q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4u7q RCSB], [http://www.ebi.ac.uk/pdbsum/4u7q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4u7q ProSAT]</span></td></tr>
	</table>		</table>
Line 17:		Line 18:
	</div>		</div>
	<div class="pdbe-citations 4u7q" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4u7q" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Immunodeficiency virus protease 3D structures\|Immunodeficiency virus protease 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Pachl, P]]		[[Category: Pachl, P]]
	[[Category: Rezacova, P]]		[[Category: Rezacova, P]]

OCA at 01:23, 19 January 2017

2017-01-19T01:23:01Z

←Older revision		Revision as of 01:23, 19 January 2017
Line 1:		Line 1:
		+
	==Structure of wild-type HIV protease in complex with photosensitive inhibitor PDI-6==		==Structure of wild-type HIV protease in complex with photosensitive inhibitor PDI-6==
	<StructureSection load='4u7q' size='340' side='right' caption='[[4u7q]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='4u7q' size='340' side='right' caption='[[4u7q]], [[Resolution\|resolution]] 1.70Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3EM:N~2~-({[7-(DIETHYLAMINO)-2-OXO-2H-CHROMEN-4-YL]METHOXY}CARBONYL)-N-[(2S,4S,5S)-4-HYDROXY-1,6-DIPHENYL-5-{[(1,3-THIAZOL-5-YLMETHOXY)CARBONYL]AMINO}HEXAN-2-YL]-L-VALINAMIDE'>3EM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3EM:N~2~-({[7-(DIETHYLAMINO)-2-OXO-2H-CHROMEN-4-YL]METHOXY}CARBONYL)-N-[(2S,4S,5S)-4-HYDROXY-1,6-DIPHENYL-5-{[(1,3-THIAZOL-5-YLMETHOXY)CARBONYL]AMINO}HEXAN-2-YL]-L-VALINAMIDE'>3EM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4u7v\|4u7v]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4u7v\|4u7v]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4u7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u7q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4u7q RCSB], [http://www.ebi.ac.uk/pdbsum/4u7q PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4u7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u7q OCA], [http://pdbe.org/4u7q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4u7q RCSB], [http://www.ebi.ac.uk/pdbsum/4u7q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4u7q ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4u7q" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 14:01, 26 March 2015

2015-03-26T14:01:37Z

←Older revision		Revision as of 14:01, 26 March 2015
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	==Structure of wild-type HIV protease in complex with photosensitive inhibitor PDI-6==
		+	<StructureSection load='4u7q' size='340' side='right' caption='[[4u7q]], [[Resolution\|resolution]] 1.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4u7q]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U7Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4U7Q FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3EM:N~2~-({[7-(DIETHYLAMINO)-2-OXO-2H-CHROMEN-4-YL]METHOXY}CARBONYL)-N-[(2S,4S,5S)-4-HYDROXY-1,6-DIPHENYL-5-{[(1,3-THIAZOL-5-YLMETHOXY)CARBONYL]AMINO}HEXAN-2-YL]-L-VALINAMIDE'>3EM</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4u7v\|4u7v]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4u7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u7q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4u7q RCSB], [http://www.ebi.ac.uk/pdbsum/4u7q PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	HIV protease (PR) is required for proteolytic maturation in the late phase of HIV replication and represents a prime therapeutic target. The regulation and kinetics of viral polyprotein processing and maturation are currently not understood in detail. Here we design, synthesize, validate and apply a potent, photodegradable HIV PR inhibitor to achieve synchronized induction of proteolysis. The compound exhibits subnanomolar inhibition in vitro. Its photolabile moiety is released on light irradiation, reducing the inhibitory potential by 4 orders of magnitude. We determine the structure of the PR-inhibitor complex, analyze its photolytic products, and show that the enzymatic activity of inhibited PR can be fully restored on inhibitor photolysis. We also demonstrate that proteolysis of immature HIV particles produced in the presence of the inhibitor can be rapidly triggered by light enabling thus to analyze the timing, regulation and spatial requirements of viral processing in real time.

-	~~The entry 4u7q is ON HOLD until Paper Publication~~	+	Triggering HIV polyprotein processing by light using rapid photodegradation of a tight-binding protease inhibitor.,Schimer J, Pavova M, Anders M, Pachl P, Sacha P, Cigler P, Weber J, Majer P, Rezacova P, Krausslich HG, Muller B, Konvalinka J Nat Commun. 2015 Mar 9;6:6461. doi: 10.1038/ncomms7461. PMID:25751579<ref>PMID:25751579</ref>

-	~~Authors: Pachl~~, P.~~, Rezacova, P~~.~~, Schimer, J~~.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description: Structure of wild-type HIV protease in complex with photosensitive inhibitor PDI-6~~	+	== References ==
-	~~[[Category: Unreleased Structures]]~~	+	<references/>
-	~~[[Category: Schimer, J]]~~	+	__TOC__
		+	</StructureSection>
	[[Category: Pachl, P]]		[[Category: Pachl, P]]
	[[Category: Rezacova, P]]		[[Category: Rezacova, P]]
		+	[[Category: Schimer, J]]
		+	[[Category: Aspartic protease]]
		+	[[Category: Hiv-1]]
		+	[[Category: Hydrolase]]
		+	[[Category: Inhibition]]
		+	[[Category: Viral protease]]

OCA at 18:13, 24 December 2014

2014-12-24T18:13:47Z

←Older revision		Revision as of 18:13, 24 December 2014
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	Description: Structure of wild-type HIV protease in complex with photosensitive inhibitor PDI-6		Description: Structure of wild-type HIV protease in complex with photosensitive inhibitor PDI-6
		+	[[Category: Unreleased Structures]]
		+	[[Category: Schimer, J]]
		+	[[Category: Pachl, P]]
		+	[[Category: Rezacova, P]]

OCA at 08:39, 10 September 2014

2014-09-10T08:39:14Z

←Older revision		Revision as of 08:39, 10 September 2014
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4u7q is ON HOLD	+	The entry 4u7q is ON HOLD until Paper Publication

	Authors: Pachl, P., Rezacova, P., Schimer, J.		Authors: Pachl, P., Rezacova, P., Schimer, J.

	Description: Structure of wild-type HIV protease in complex with photosensitive inhibitor PDI-6		Description: Structure of wild-type HIV protease in complex with photosensitive inhibitor PDI-6

OCA: Protected "4u7q" [edit=sysop:move=sysop]

2014-08-07T01:34:03Z

Protected "4u7q" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:34, 7 August 2014

OCA: New page: '''Unreleased structure''' The entry 4u7q is ON HOLD Authors: Pachl, P., Rezacova, P., Schimer, J. Description: Structure of wild-type HIV protease in complex with photosensitive inhib...

2014-08-07T01:34:01Z

New page: '''Unreleased structure''' The entry 4u7q is ON HOLD Authors: Pachl, P., Rezacova, P., Schimer, J. Description: Structure of wild-type HIV protease in complex with photosensitive inhib...

New page

'''Unreleased structure'''

The entry 4u7q is ON HOLD

Authors: Pachl, P., Rezacova, P., Schimer, J.

Description: Structure of wild-type HIV protease in complex with photosensitive inhibitor PDI-6