4udn - Revision history

OCA at 12:28, 20 December 2023

2023-12-20T12:28:48Z

←Older revision		Revision as of 12:28, 20 December 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4udn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Candidatus_Liberibacter_asiaticus Candidatus Liberibacter asiaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UDN FirstGlance]. <br>		<table><tr><td colspan='2'>[[4udn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Candidatus_Liberibacter_asiaticus Candidatus Liberibacter asiaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UDN FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.21Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4udn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4udn OCA], [https://pdbe.org/4udn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4udn RCSB], [https://www.ebi.ac.uk/pdbsum/4udn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4udn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4udn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4udn OCA], [https://pdbe.org/4udn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4udn RCSB], [https://www.ebi.ac.uk/pdbsum/4udn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4udn ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:18, 22 March 2023

2023-03-22T08:18:44Z

←Older revision		Revision as of 08:18, 22 March 2023
Line 3:		Line 3:
	<StructureSection load='4udn' size='340' side='right'caption='[[4udn]], [[Resolution\|resolution]] 2.21Å' scene=''>		<StructureSection load='4udn' size='340' side='right'caption='[[4udn]], [[Resolution\|resolution]] 2.21Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4udn]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"candidatus_liberobacter_asiaticum"_jagoueix_et_al._1994 "candidatus liberobacter asiaticum" jagoueix et al. 1994~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UDN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4UDN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4udn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Candidatus_Liberibacter_asiaticus Candidatus Liberibacter asiaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UDN FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4udo\|4udo]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4udn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4udn OCA], [https://pdbe.org/4udn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4udn RCSB], [https://www.ebi.ac.uk/pdbsum/4udn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4udn ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4udn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4udn OCA], [~~http~~://pdbe.org/4udn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4udn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4udn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4udn ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/C6XF58_LIBAP C6XF58_LIBAP]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Candidatus ~~liberobacter asiaticum jagoueix et al. 1994~~]]	+	[[Category: Candidatus Liberibacter asiaticus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Kumar, P]]	+	[[Category: Kumar P]]
-	[[Category: Selvakumar, P]]	+	[[Category: Selvakumar P]]
-	[[Category: Sharma~~, A K~~]]	+	[[Category: Sharma AK]]
-	[[Category: Sharma, N]]	+	[[Category: Sharma N]]
-	~~[[Category: Metal binding protein]]~~	+
-	~~[[Category: Metal ion transporter]]~~	+
-	~~[[Category: Periplasmic~~]]	+

OCA at 09:00, 21 May 2019

2019-05-21T09:00:16Z

←Older revision		Revision as of 09:00, 21 May 2019
Line 1:		Line 1:

	==structure of metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus==		==structure of metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus==
-	<StructureSection load='4udn' size='340' side='right' caption='[[4udn]], [[Resolution\|resolution]] 2.21Å' scene=''>	+	<StructureSection load='4udn' size='340' side='right'caption='[[4udn]], [[Resolution\|resolution]] 2.21Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4udn]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UDN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UDN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4udn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"candidatus_liberobacter_asiaticum"_jagoueix_et_al._1994 "candidatus liberobacter asiaticum" jagoueix et al. 1994]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UDN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UDN FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4udo\|4udo]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4udo\|4udo]]</td></tr>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Candidatus liberobacter asiaticum jagoueix et al. 1994]]
		+	[[Category: Large Structures]]
	[[Category: Kumar, P]]		[[Category: Kumar, P]]
	[[Category: Selvakumar, P]]		[[Category: Selvakumar, P]]

OCA at 01:25, 19 January 2017

2017-01-19T01:25:01Z

←Older revision		Revision as of 01:25, 19 January 2017
Line 1:		Line 1:
		+
	==structure of metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus==		==structure of metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus==
	<StructureSection load='4udn' size='340' side='right' caption='[[4udn]], [[Resolution\|resolution]] 2.21Å' scene=''>		<StructureSection load='4udn' size='340' side='right' caption='[[4udn]], [[Resolution\|resolution]] 2.21Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4udo\|4udo]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4udo\|4udo]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4udn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4udn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4udn RCSB], [http://www.ebi.ac.uk/pdbsum/4udn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4udn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4udn OCA], [http://pdbe.org/4udn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4udn RCSB], [http://www.ebi.ac.uk/pdbsum/4udn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4udn ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4udn" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 11:54, 12 February 2015

2015-02-12T11:54:15Z

←Older revision		Revision as of 11:54, 12 February 2015
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	==structure of metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus==
		+	<StructureSection load='4udn' size='340' side='right' caption='[[4udn]], [[Resolution\|resolution]] 2.21Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4udn]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UDN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UDN FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4udo\|4udo]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4udn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4udn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4udn RCSB], [http://www.ebi.ac.uk/pdbsum/4udn PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The Znu system, a member of ABC transporter family, is critical for survival and pathogenesis of Candidatus Liberibacter asiaticus (CLA). Two homologues of this system have been identified in CLA. Here, we report high resolution crystal structure of a periplasmic solute binding protein from second of the two gene clusters of Znu system in CLA (CLas-ZnuA2) in metal-free, intermediate and metal-bound states. CLas-ZnuA2 showed maximum sequence identity to the Mn/Fe-specific solute binding proteins (SBPs) of cluster A-I family. The overall fold of CLas-ZnuA2 is similar to the related cluster A-I family SBPs. The sequence and structure analysis revealed the unique features of CLas-ZnuA2. The comparison of CLas-ZnuA2 structure in three states showed that metal binding and release is facilitated by a large displacement along with a change in orientation of the side chain for one of the metal binding residue (His39) flipped away from metal binding site in metal-free form. The crystal structure captured in intermediate state of metal binding revealed the changes in conformation and interaction of the loop hosting His39 during the metal binding. A rigid body movement of C-domain along with partial unfolding of linker helix at its C-terminal during metal binding, as reported for PsaA, was not observed in CLas-ZnuA2. The present results suggest that despite showing maximum sequence identity to the Mn/Fe-specific SBPs, the mechanistic resemblance of CLas-ZnuA2 seems to be closer to Zn-specific SBPs of cluster A-I family.

-	~~The entry 4udn is ON HOLD until Paper Publication~~	+	Crystal structure of a periplasmic solute binding protein in metal-free, intermediate and metal-bound states from Candidatus Liberibacter asiaticus.,Sharma N, Selvakumar P, Bhose S, Ghosh DK, Kumar P, Sharma AK J Struct Biol. 2015 Jan 30. pii: S1047-8477(15)00028-3. doi:, 10.1016/j.jsb.2015.01.012. PMID:25641618<ref>PMID:25641618</ref>

-	~~Authors: Sharma~~, N.~~, Selvakumar, P~~.~~, Kumar, P., Sharma, A.K~~.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description: structure of metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus~~	+	== References ==
-	~~[[Category: Unreleased Structures]]~~	+	<references/>
-	~~[[Category: Sharma, N]]~~	+	__TOC__
		+	</StructureSection>
	[[Category: Kumar, P]]		[[Category: Kumar, P]]
	[[Category: Selvakumar, P]]		[[Category: Selvakumar, P]]
-	[[Category: Sharma, A.K]]	+	[[Category: Sharma, A K]]
		+	[[Category: Sharma, N]]
		+	[[Category: Metal binding protein]]
		+	[[Category: Metal ion transporter]]
		+	[[Category: Periplasmic]]

OCA at 18:26, 24 December 2014

2014-12-24T18:26:54Z

←Older revision		Revision as of 18:26, 24 December 2014
Line 6:		Line 6:

	Description: structure of metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus		Description: structure of metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus
		+	[[Category: Unreleased Structures]]
		+	[[Category: Sharma, N]]
		+	[[Category: Kumar, P]]
		+	[[Category: Selvakumar, P]]
		+	[[Category: Sharma, A.K]]

OCA at 09:40, 24 December 2014

2014-12-24T09:40:07Z

←Older revision		Revision as of 09:40, 24 December 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4udn is ON HOLD	+	The entry 4udn is ON HOLD until Paper Publication

	Authors: Sharma, N., Selvakumar, P., Kumar, P., Sharma, A.K.		Authors: Sharma, N., Selvakumar, P., Kumar, P., Sharma, A.K.

	Description: structure of metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus		Description: structure of metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus

OCA: Protected "4udn" [edit=sysop:move=sysop]

2014-12-17T11:21:29Z

Protected "4udn" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:21, 17 December 2014

OCA: New page: '''Unreleased structure''' The entry 4udn is ON HOLD Authors: Sharma, N., Selvakumar, P., Kumar, P., Sharma, A.K. Description: structure of metal-free periplasmic metal binding protein...

2014-12-17T11:21:28Z

New page: '''Unreleased structure''' The entry 4udn is ON HOLD Authors: Sharma, N., Selvakumar, P., Kumar, P., Sharma, A.K. Description: structure of metal-free periplasmic metal binding protein...

New page

'''Unreleased structure'''

The entry 4udn is ON HOLD

Authors: Sharma, N., Selvakumar, P., Kumar, P., Sharma, A.K.

Description: structure of metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus