4umi - Revision history

OCA at 10:30, 10 January 2024

2024-01-10T10:30:33Z

←Older revision		Revision as of 10:30, 10 January 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4umi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Snake_adenovirus_1 Snake adenovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UMI FirstGlance]. <br>		<table><tr><td colspan='2'>[[4umi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Snake_adenovirus_1 Snake adenovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UMI FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4umi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umi OCA], [https://pdbe.org/4umi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4umi RCSB], [https://www.ebi.ac.uk/pdbsum/4umi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4umi ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.33Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4umi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umi OCA], [https://pdbe.org/4umi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4umi RCSB], [https://www.ebi.ac.uk/pdbsum/4umi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4umi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 08:29, 22 March 2023

2023-03-22T08:29:15Z

←Older revision		Revision as of 08:29, 22 March 2023
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	<StructureSection load='4umi' size='340' side='right'caption='[[4umi]], [[Resolution\|resolution]] 1.33Å' scene=''>		<StructureSection load='4umi' size='340' side='right'caption='[[4umi]], [[Resolution\|resolution]] 1.33Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4umi]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Ades1 Ades1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4UMI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4umi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Snake_adenovirus_1 Snake adenovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UMI FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4umi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umi OCA], [~~http~~://pdbe.org/4umi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4umi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4umi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4umi ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4umi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umi OCA], [https://pdbe.org/4umi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4umi RCSB], [https://www.ebi.ac.uk/pdbsum/4umi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4umi ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/SPIKE_ADES1 SPIKE_ADES1]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Ades1]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Raaij, M J.van~~]]	+	[[Category: Snake adenovirus 1]]
-	[[Category: Singh~~, A K~~]]	+	[[Category: Singh AK]]
-	[[Category: ~~Viral protein~~]]	+	[[Category: Van Raaij MJ]]

OCA at 11:07, 26 February 2020

2020-02-26T11:07:45Z

←Older revision		Revision as of 11:07, 26 February 2020
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	==Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1, native, F23 crystal form==		==Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1, native, F23 crystal form==
-	<StructureSection load='4umi' size='340' side='right' caption='[[4umi]], [[Resolution\|resolution]] 1.33Å' scene=''>	+	<StructureSection load='4umi' size='340' side='right'caption='[[4umi]], [[Resolution\|resolution]] 1.33Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4umi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ades1 Ades1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UMI FirstGlance]. <br>		<table><tr><td colspan='2'>[[4umi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ades1 Ades1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UMI FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Ades1]]		[[Category: Ades1]]
		+	[[Category: Large Structures]]
	[[Category: Raaij, M J.van]]		[[Category: Raaij, M J.van]]
	[[Category: Singh, A K]]		[[Category: Singh, A K]]
	[[Category: Viral protein]]		[[Category: Viral protein]]

OCA at 07:54, 17 January 2018

2018-01-17T07:54:51Z

←Older revision		Revision as of 07:54, 17 January 2018
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	<StructureSection load='4umi' size='340' side='right' caption='[[4umi]], [[Resolution\|resolution]] 1.33Å' scene=''>		<StructureSection load='4umi' size='340' side='right' caption='[[4umi]], [[Resolution\|resolution]] 1.33Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4umi]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UMI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4umi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ades1 Ades1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UMI FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4umi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umi OCA], [http://pdbe.org/4umi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4umi RCSB], [http://www.ebi.ac.uk/pdbsum/4umi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4umi ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4umi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umi OCA], [http://pdbe.org/4umi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4umi RCSB], [http://www.ebi.ac.uk/pdbsum/4umi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4umi ProSAT]</span></td></tr>
	</table>		</table>
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Ades1]]
	[[Category: Raaij, M J.van]]		[[Category: Raaij, M J.van]]
	[[Category: Singh, A K]]		[[Category: Singh, A K]]
	[[Category: Viral protein]]		[[Category: Viral protein]]

OCA at 01:15, 19 January 2017

2017-01-19T01:15:59Z

←Older revision		Revision as of 01:15, 19 January 2017
Line 1:		Line 1:
		+
	==Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1, native, F23 crystal form==		==Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1, native, F23 crystal form==
	<StructureSection load='4umi' size='340' side='right' caption='[[4umi]], [[Resolution\|resolution]] 1.33Å' scene=''>		<StructureSection load='4umi' size='340' side='right' caption='[[4umi]], [[Resolution\|resolution]] 1.33Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4umi]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UMI FirstGlance]. <br>		<table><tr><td colspan='2'>[[4umi]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UMI FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4umi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4umi RCSB], [http://www.ebi.ac.uk/pdbsum/4umi PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4umi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umi OCA], [http://pdbe.org/4umi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4umi RCSB], [http://www.ebi.ac.uk/pdbsum/4umi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4umi ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 13:		Line 14:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4umi" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:49, 17 December 2014

2014-12-17T12:49:53Z

←Older revision		Revision as of 12:49, 17 December 2014
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	==Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1, native, F23 crystal form==
		+	<StructureSection load='4umi' size='340' side='right' caption='[[4umi]], [[Resolution\|resolution]] 1.33Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4umi]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UMI FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4umi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4umi RCSB], [http://www.ebi.ac.uk/pdbsum/4umi PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Adenoviruses are non-enveloped icosahedral viruses with trimeric fibre proteins protruding from their vertices. There are five known genera, from which only Mastadenoviruses have been widely studied. Apart from studying adenovirus as a biological model system and with a view to prevent or combat viral infection, there is a major interest in using adenovirus for vaccination, cancer therapy and gene therapy purposes. Adenoviruses from the Atadenovirus genus have been isolated from squamate reptile hosts, ruminants and birds and have a characteristic gene organization and capsid morphology. The carboxy-terminal virus-distal fibre head domains are likely responsible for primary receptor recognition. We determined the high-resolution crystal structure of the Snake Adenovirus 1 (SnAdV-1) fibre head using the multi-wavelength anomalous dispersion (MAD) method. Despite the absence of significant sequence homology, this Atadenovirus fibre head has the same beta-sandwich propeller topology as other adenovirus fibre heads. However, it is about half the size, mainly due to much shorter loops connecting the beta-strands. The detailed structure of the SnAdV-1 fibre head and other animal adenovirus fibre heads, together with the future identification of their natural receptors, may lead to the development of new strategies to target adenovirus vectors to cells of interest.

-	~~The entry 4umi is ON HOLD until Paper Publication~~	+	Crystal structure of the fibre head domain of the atadenovirus snake adenovirus 1.,Singh AK, Menendez-Conejero R, San Martin C, van Raaij MJ PLoS One. 2014 Dec 8;9(12):e114373. doi: 10.1371/journal.pone.0114373., eCollection 2014. PMID:25486282<ref>PMID:25486282</ref>

-	~~Authors: Singh~~, A.K.~~, van~~ Raaij, M.J.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description~~: ~~Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1~~, ~~native, F23 crystal form~~	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Raaij, M J.van]]
		+	[[Category: Singh, A K]]
		+	[[Category: Viral protein]]

OCA: Protected "4umi" [edit=sysop:move=sysop]

2014-05-28T08:36:48Z

Protected "4umi" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:36, 28 May 2014

OCA: New page: '''Unreleased structure''' The entry 4umi is ON HOLD until Paper Publication Authors: Singh, A.K., van Raaij, M.J. Description: Crystal structure of the fiber head domain of the Ataden...

2014-05-28T08:36:46Z

New page: '''Unreleased structure''' The entry 4umi is ON HOLD until Paper Publication Authors: Singh, A.K., van Raaij, M.J. Description: Crystal structure of the fiber head domain of the Ataden...

New page

'''Unreleased structure'''

The entry 4umi is ON HOLD until Paper Publication

Authors: Singh, A.K., van Raaij, M.J.

Description: Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1, native, F23 crystal form