4w4q - Revision history

OCA at 09:01, 20 March 2024

2024-03-20T09:01:28Z

←Older revision		Revision as of 09:01, 20 March 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4w4q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4W4Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4W4Q FirstGlance]. <br>		<table><tr><td colspan='2'>[[4w4q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4W4Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4W4Q FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4w4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w4q OCA], [https://pdbe.org/4w4q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4w4q RCSB], [https://www.ebi.ac.uk/pdbsum/4w4q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4w4q ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4w4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w4q OCA], [https://pdbe.org/4w4q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4w4q RCSB], [https://www.ebi.ac.uk/pdbsum/4w4q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4w4q ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU] Involved in D-xylose catabolism.		[https://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU] Involved in D-xylose catabolism.
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Serial femtosecond X-ray crystallography (SFX) has revolutionized atomic-resolution structural investigation by expanding applicability to micrometer-sized protein crystals, even at room temperature, and by enabling dynamics studies. However, reliable crystal-carrying media for SFX are lacking. Here we introduce a grease-matrix carrier for protein microcrystals and obtain the structures of lysozyme, glucose isomerase, thaumatin and fatty acid-binding protein type 3 under ambient conditions at a resolution of or finer than 2 A.
-
-	Grease matrix as a versatile carrier of proteins for serial crystallography.,Sugahara M, Mizohata E, Nango E, Suzuki M, Tanaka T, Masuda T, Tanaka R, Shimamura T, Tanaka Y, Suno C, Ihara K, Pan D, Kakinouchi K, Sugiyama S, Murata M, Inoue T, Tono K, Song C, Park J, Kameshima T, Hatsui T, Joti Y, Yabashi M, Iwata S Nat Methods. 2014 Nov 10. doi: 10.1038/nmeth.3172. PMID:25384243<ref>PMID:25384243</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 4w4q" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 08:16, 29 March 2023

2023-03-29T08:16:46Z

←Older revision		Revision as of 08:16, 29 March 2023
Line 3:		Line 3:
	<StructureSection load='4w4q' size='340' side='right'caption='[[4w4q]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='4w4q' size='340' side='right'caption='[[4w4q]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4w4q]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4W4Q OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4W4Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4w4q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4W4Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4W4Q FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4w4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w4q OCA], [https://pdbe.org/4w4q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4w4q RCSB], [https://www.ebi.ac.uk/pdbsum/4w4q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4w4q ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4w4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w4q OCA], [~~http~~://pdbe.org/4w4q PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4w4q RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4w4q PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4w4q ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU]] Involved in D-xylose catabolism.	+	[https://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU] Involved in D-xylose catabolism.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 25:		Line 24:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Streptomyces rubiginosus]]		[[Category: Streptomyces rubiginosus]]
-	~~[[Category: Xylose isomerase]]~~	+	[[Category: Iwata S]]
-	[[Category: Iwata, S]]	+	[[Category: Nango E]]
-	[[Category: Nango, E]]	+	[[Category: Sugahara M]]
-	[[Category: Sugahara, M]]	+	[[Category: Suzuki M]]
-	[[Category: Suzuki, M]]	+	[[Category: Tanaka T]]
-	[[Category: Tanaka, T]]	+
-	~~[[Category: Glucose isomerase]]~~	+
-	~~[[Category: Isomerase]]~~	+
-	~~[[Category: Xfel~~]]	+

OCA at 10:53, 26 February 2020

2020-02-26T10:53:58Z

←Older revision		Revision as of 10:53, 26 February 2020
Line 1:		Line 1:

	==Glucose isomerase structure determined by serial femtosecond crystallography at SACLA==		==Glucose isomerase structure determined by serial femtosecond crystallography at SACLA==
-	<StructureSection load='4w4q' size='340' side='right' caption='[[4w4q]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='4w4q' size='340' side='right'caption='[[4w4q]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4w4q]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4W4Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4W4Q FirstGlance]. <br>		<table><tr><td colspan='2'>[[4w4q]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4W4Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4W4Q FirstGlance]. <br>
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Streptomyces rubiginosus]]		[[Category: Streptomyces rubiginosus]]
	[[Category: Xylose isomerase]]		[[Category: Xylose isomerase]]

OCA at 18:55, 11 August 2016

2016-08-11T18:55:39Z

←Older revision		Revision as of 18:55, 11 August 2016
Line 1:		Line 1:
		+
	==Glucose isomerase structure determined by serial femtosecond crystallography at SACLA==		==Glucose isomerase structure determined by serial femtosecond crystallography at SACLA==
	<StructureSection load='4w4q' size='340' side='right' caption='[[4w4q]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='4w4q' size='340' side='right' caption='[[4w4q]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4w4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w4q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4w4q RCSB], [http://www.ebi.ac.uk/pdbsum/4w4q PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4w4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w4q OCA], [http://pdbe.org/4w4q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4w4q RCSB], [http://www.ebi.ac.uk/pdbsum/4w4q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4w4q ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4w4q" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 13:49, 25 December 2014

2014-12-25T13:49:47Z

←Older revision		Revision as of 13:49, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4w4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w4q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4w4q RCSB], [http://www.ebi.ac.uk/pdbsum/4w4q PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4w4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w4q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4w4q RCSB], [http://www.ebi.ac.uk/pdbsum/4w4q PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU]] Involved in D-xylose catabolism.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 09:46, 17 December 2014

2014-12-17T09:46:42Z

←Older revision		Revision as of 09:46, 17 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4w4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w4q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4w4q RCSB], [http://www.ebi.ac.uk/pdbsum/4w4q PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4w4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w4q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4w4q RCSB], [http://www.ebi.ac.uk/pdbsum/4w4q PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Serial femtosecond X-ray crystallography (SFX) has revolutionized atomic-resolution structural investigation by expanding applicability to micrometer-sized protein crystals, even at room temperature, and by enabling dynamics studies. However, reliable crystal-carrying media for SFX are lacking. Here we introduce a grease-matrix carrier for protein microcrystals and obtain the structures of lysozyme, glucose isomerase, thaumatin and fatty acid-binding protein type 3 under ambient conditions at a resolution of or finer than 2 A.
		+
		+	Grease matrix as a versatile carrier of proteins for serial crystallography.,Sugahara M, Mizohata E, Nango E, Suzuki M, Tanaka T, Masuda T, Tanaka R, Shimamura T, Tanaka Y, Suno C, Ihara K, Pan D, Kakinouchi K, Sugiyama S, Murata M, Inoue T, Tono K, Song C, Park J, Kameshima T, Hatsui T, Joti Y, Yabashi M, Iwata S Nat Methods. 2014 Nov 10. doi: 10.1038/nmeth.3172. PMID:25384243<ref>PMID:25384243</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Streptomyces rubiginosus]]		[[Category: Streptomyces rubiginosus]]
	[[Category: Xylose isomerase]]		[[Category: Xylose isomerase]]
-	[[Category: Iwata, S.]]	+	[[Category: Iwata, S]]
-	[[Category: Nango, E.]]	+	[[Category: Nango, E]]
-	[[Category: Sugahara, M.]]	+	[[Category: Sugahara, M]]
-	[[Category: Suzuki, M.]]	+	[[Category: Suzuki, M]]
-	[[Category: Tanaka, T.]]	+	[[Category: Tanaka, T]]
	[[Category: Glucose isomerase]]		[[Category: Glucose isomerase]]
	[[Category: Isomerase]]		[[Category: Isomerase]]
	[[Category: Xfel]]		[[Category: Xfel]]
-	[[Category: Xylose isomerase]]

OCA at 09:04, 5 November 2014

2014-11-05T09:04:55Z

←Older revision		Revision as of 09:04, 5 November 2014
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Glucose isomerase structure determined by serial femtosecond crystallography at SACLA==
-		+	<StructureSection load='4w4q' size='340' side='right' caption='[[4w4q]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~The entry~~ 4w4q is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4w4q]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4W4Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4W4Q FirstGlance]. <br>
-	~~Authors~~: ~~Nango~~, E., ~~Tanaka~~, T., Sugahara, M., Suzuki, M., ~~Iwata, S~~.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>
-	~~Description~~: Glucose isomerase ~~structure determined by serial femtosecond crystallography at SACLA~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4w4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w4q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4w4q RCSB], [http://www.ebi.ac.uk/pdbsum/4w4q PDBsum]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Streptomyces rubiginosus]]
		+	[[Category: Xylose isomerase]]
		+	[[Category: Iwata, S.]]
		+	[[Category: Nango, E.]]
		+	[[Category: Sugahara, M.]]
		+	[[Category: Suzuki, M.]]
		+	[[Category: Tanaka, T.]]
		+	[[Category: Glucose isomerase]]
		+	[[Category: Isomerase]]
		+	[[Category: Xfel]]
		+	[[Category: Xylose isomerase]]

OCA: Protected "4w4q" [edit=sysop:move=sysop]

2014-08-20T15:16:37Z

Protected "4w4q" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:16, 20 August 2014

OCA: New page: '''Unreleased structure''' The entry 4w4q is ON HOLD Authors: Nango, E., Tanaka, T., Sugahara, M., Suzuki, M., Iwata, S. Description: Glucose isomerase structure determined by serial f...

2014-08-20T15:16:35Z

New page: '''Unreleased structure''' The entry 4w4q is ON HOLD Authors: Nango, E., Tanaka, T., Sugahara, M., Suzuki, M., Iwata, S. Description: Glucose isomerase structure determined by serial f...

New page

'''Unreleased structure'''

The entry 4w4q is ON HOLD

Authors: Nango, E., Tanaka, T., Sugahara, M., Suzuki, M., Iwata, S.

Description: Glucose isomerase structure determined by serial femtosecond crystallography at SACLA