4ykb - Revision history

OCA at 08:01, 27 September 2023

2023-09-27T08:01:50Z

←Older revision		Revision as of 08:01, 27 September 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ykb]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YKB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YKB FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ykb]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YKB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YKB FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ykb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ykb OCA], [https://pdbe.org/4ykb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ykb RCSB], [https://www.ebi.ac.uk/pdbsum/4ykb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ykb ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.5Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ykb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ykb OCA], [https://pdbe.org/4ykb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ykb RCSB], [https://www.ebi.ac.uk/pdbsum/4ykb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ykb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 08:16, 3 May 2023

2023-05-03T08:16:48Z

←Older revision		Revision as of 08:16, 3 May 2023
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	==Structure of GUN4 from Chlamydomonas reinhardtii==		==Structure of GUN4 from Chlamydomonas reinhardtii==
-	<StructureSection load='4ykb' size='340' side='right' caption='[[4ykb]], [[Resolution\|resolution]] 3.50Å' scene=''>	+	<StructureSection load='4ykb' size='340' side='right'caption='[[4ykb]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ykb]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Chlre Chlre~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YKB OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4YKB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ykb]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YKB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YKB FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GUN4, CHLREDRAFT_205768 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3055 CHLRE])</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ykb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ykb OCA], [https://pdbe.org/4ykb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ykb RCSB], [https://www.ebi.ac.uk/pdbsum/4ykb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ykb ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4ykb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ykb OCA], [~~http~~://pdbe.org/4ykb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4ykb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4ykb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4ykb ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A8I5N5_CHLRE A8I5N5_CHLRE]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Chlre~~]]	+	[[Category: Chlamydomonas reinhardtii]]
-	[[Category: ~~Duff, A P~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Harrop, S J~~]]	+	[[Category: Duff AP]]
-	[[Category: ~~Langley, D B~~]]	+	[[Category: Harrop SJ]]
-	[[Category: ~~Tabriz, S T~~]]	+	[[Category: Langley DB]]
-	[[Category: ~~Willows, R D~~]]	+	[[Category: Tabriz ST]]
-	[[Category: ~~Plant protein~~]]	+	[[Category: Willows RD]]

OCA at 05:44, 16 May 2018

2018-05-16T05:44:03Z

←Older revision		Revision as of 05:44, 16 May 2018
Line 3:		Line 3:
	<StructureSection load='4ykb' size='340' side='right' caption='[[4ykb]], [[Resolution\|resolution]] 3.50Å' scene=''>		<StructureSection load='4ykb' size='340' side='right' caption='[[4ykb]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ykb]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YKB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YKB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ykb]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlre Chlre]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YKB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YKB FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ykb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ykb OCA], [http://pdbe.org/4ykb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ykb RCSB], [http://www.ebi.ac.uk/pdbsum/4ykb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ykb ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GUN4, CHLREDRAFT_205768 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3055 CHLRE])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ykb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ykb OCA], [http://pdbe.org/4ykb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ykb RCSB], [http://www.ebi.ac.uk/pdbsum/4ykb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ykb ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The genomes uncoupled 4 (GUN4) protein stimulates chlorophyll biosynthesis by increasing the activity of Mg-chelatase, the enzyme that inserts magnesium into protoporphyrin IX (PPIX) in the chlorophyll biosynthesis pathway. One of the roles of GUN4 is in binding PPIX and Mg-PPIX. In eukaryotes, GUN4 also participates in plastid-to-nucleus signalling, although the mechanism for this is unclear. Here, the first crystal structure of a eukaryotic GUN4, from Chlamydomonas reinhardtii, is presented. The structure is in broad agreement with those of previously solved cyanobacterial structures. Most interestingly, conformational divergence is restricted to several loops which cover the porphyrin-binding cleft. The conformational dynamics suggested by this ensemble of structures lend support to the understanding of how GUN4 binds PPIX or Mg-PPIX.
		+
		+	Structure of GUN4 from Chlamydomonas reinhardtii.,Tarahi Tabrizi S, Langley DB, Harrop SJ, Duff AP, Willows RD Acta Crystallogr F Struct Biol Commun. 2015 Aug;71(Pt 8):1094-9. doi:, 10.1107/S2053230X15012248. Epub 2015 Jul 29. PMID:26249706<ref>PMID:26249706</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 4ykb" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Chlre]]
	[[Category: Duff, A P]]		[[Category: Duff, A P]]
	[[Category: Harrop, S J]]		[[Category: Harrop, S J]]

OCA at 16:11, 17 May 2017

2017-05-17T16:11:43Z

←Older revision		Revision as of 16:11, 17 May 2017
Line 1:		Line 1:
		+
	==Structure of GUN4 from Chlamydomonas reinhardtii==		==Structure of GUN4 from Chlamydomonas reinhardtii==
	<StructureSection load='4ykb' size='340' side='right' caption='[[4ykb]], [[Resolution\|resolution]] 3.50Å' scene=''>		<StructureSection load='4ykb' size='340' side='right' caption='[[4ykb]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ykb]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YKB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YKB FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ykb]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YKB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YKB FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ykb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ykb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ykb RCSB], [http://www.ebi.ac.uk/pdbsum/4ykb PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ykb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ykb OCA], [http://pdbe.org/4ykb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ykb RCSB], [http://www.ebi.ac.uk/pdbsum/4ykb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ykb ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__

OCA at 14:50, 12 August 2015

2015-08-12T14:50:30Z

←Older revision		Revision as of 14:50, 12 August 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Structure of GUN4 from Chlamydomonas reinhardtii==
-		+	<StructureSection load='4ykb' size='340' side='right' caption='[[4ykb]], [[Resolution\|resolution]] 3.50Å' scene=''>
-	~~The entry~~ 4ykb is ~~ON HOLD until Mar 04 2017~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4ykb]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YKB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YKB FirstGlance]. <br>
-	~~Authors~~: ~~Tabriz, S~~.T.~~, Langley, D~~.B., ~~Willows, R~~.D., ~~Duff, A~~.P., ~~Harrop, S~~.J.	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ykb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ykb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ykb RCSB], [http://www.ebi.ac.uk/pdbsum/4ykb PDBsum]</span></td></tr>
-		+	</table>
-	~~Description: Structure of GUN4 from Chlamydomonas reinhardtii~~	+	__TOC__
-	[[Category: ~~Unreleased Structures~~]]	+	</StructureSection>
-	[[Category: ~~Langley~~, ~~D.B~~]]	+	[[Category: Duff, A P]]
-	[[Category: ~~Duff~~, ~~A.P~~]]	+	[[Category: Harrop, S J]]
-	[[Category: Tabriz, S.T]]	+	[[Category: Langley, D B]]
-	[[Category: Willows, R.D]]	+	[[Category: Tabriz, S T]]
-	[[Category: ~~Harrop, S.J~~]]	+	[[Category: Willows, R D]]
		+	[[Category: Plant protein]]

OCA: Protected "4ykb" [edit=sysop:move=sysop]

2015-03-11T10:45:22Z

Protected "4ykb" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:45, 11 March 2015

OCA: New page: '''Unreleased structure''' The entry 4ykb is ON HOLD until Mar 04 2017 Authors: Tabriz, S.T., Langley, D.B., Willows, R.D., Duff, A.P., Harrop, S.J. Description: Structure of GUN4 from...

2015-03-11T10:45:20Z

New page: '''Unreleased structure''' The entry 4ykb is ON HOLD until Mar 04 2017 Authors: Tabriz, S.T., Langley, D.B., Willows, R.D., Duff, A.P., Harrop, S.J. Description: Structure of GUN4 from...

New page

'''Unreleased structure'''

The entry 4ykb is ON HOLD until Mar 04 2017

Authors: Tabriz, S.T., Langley, D.B., Willows, R.D., Duff, A.P., Harrop, S.J.

Description: Structure of GUN4 from Chlamydomonas reinhardtii
[[Category: Unreleased Structures]]
[[Category: Langley, D.B]]
[[Category: Duff, A.P]]
[[Category: Tabriz, S.T]]
[[Category: Willows, R.D]]
[[Category: Harrop, S.J]]