4yn8 - Revision history

OCA at 15:37, 8 November 2023

2023-11-08T15:37:14Z

←Older revision		Revision as of 15:37, 8 November 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4yn8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebacterium diphtheriae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YN8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YN8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4yn8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebacterium diphtheriae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YN8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YN8 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yn8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yn8 OCA], [https://pdbe.org/4yn8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yn8 RCSB], [https://www.ebi.ac.uk/pdbsum/4yn8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yn8 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yn8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yn8 OCA], [https://pdbe.org/4yn8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yn8 RCSB], [https://www.ebi.ac.uk/pdbsum/4yn8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yn8 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:20, 3 May 2023

2023-05-03T08:20:59Z

←Older revision		Revision as of 08:20, 3 May 2023
Line 3:		Line 3:
	<StructureSection load='4yn8' size='340' side='right'caption='[[4yn8]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='4yn8' size='340' side='right'caption='[[4yn8]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4yn8]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_diphtheriae"_kruse_in_flugge_1886 "bacillus~~ diphtheriae~~" kruse in flugge 1886~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YN8 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4YN8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4yn8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebacterium diphtheriae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YN8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YN8 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">chrA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1717 "Bacillus diphtheriae" Kruse in Flugge 1886])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yn8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yn8 OCA], [https://pdbe.org/4yn8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yn8 RCSB], [https://www.ebi.ac.uk/pdbsum/4yn8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yn8 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4yn8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yn8 OCA], [~~http~~://pdbe.org/4yn8 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4yn8 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4yn8 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4yn8 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9RPE9_CORDP Q9RPE9_CORDP]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ diphtheriae ~~kruse in flugge 1886~~]]	+	[[Category: Corynebacterium diphtheriae]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Doi, A]]	+	[[Category: Doi A]]
-	[[Category: Nakamura, H]]	+	[[Category: Nakamura H]]
-	[[Category: Shiro, Y]]	+	[[Category: Shiro Y]]
-	[[Category: Sugimoto, H]]	+	[[Category: Sugimoto H]]
-	~~[[Category: Dna binding protein]]~~	+
-	~~[[Category: Dna-binding]]~~	+
-	~~[[Category: Helix-turn-helix~~]]	+

OCA at 08:46, 5 February 2020

2020-02-05T08:46:22Z

←Older revision		Revision as of 08:46, 5 February 2020
Line 19:		Line 19:

	==See Also==		==See Also==
-	*[[Response regulator\|Response regulator]]	+	*[[Response regulator 3D structure\|Response regulator 3D structure]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:47, 12 June 2019

2019-06-12T06:47:45Z

←Older revision		Revision as of 06:47, 12 June 2019
Line 1:		Line 1:

	==Crystal Structure of Response Regulator ChrA in Heme-Sensing Two Component System==		==Crystal Structure of Response Regulator ChrA in Heme-Sensing Two Component System==
-	<StructureSection load='4yn8' size='340' side='right' caption='[[4yn8]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='4yn8' size='340' side='right'caption='[[4yn8]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4yn8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YN8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YN8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4yn8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_diphtheriae"_kruse_in_flugge_1886 "bacillus diphtheriae" kruse in flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YN8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YN8 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">chrA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1717 "Bacillus diphtheriae" Kruse in Flugge 1886])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yn8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yn8 OCA], [http://pdbe.org/4yn8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yn8 RCSB], [http://www.ebi.ac.uk/pdbsum/4yn8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yn8 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yn8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yn8 OCA], [http://pdbe.org/4yn8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yn8 RCSB], [http://www.ebi.ac.uk/pdbsum/4yn8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yn8 ProSAT]</span></td></tr>
	</table>		</table>
Line 16:		Line 17:
	</div>		</div>
	<div class="pdbe-citations 4yn8" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4yn8" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Response regulator\|Response regulator]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus diphtheriae kruse in flugge 1886]]
		+	[[Category: Large Structures]]
	[[Category: Doi, A]]		[[Category: Doi, A]]
	[[Category: Nakamura, H]]		[[Category: Nakamura, H]]

OCA at 14:12, 24 May 2017

2017-05-24T14:12:53Z

←Older revision		Revision as of 14:12, 24 May 2017
Line 1:		Line 1:
		+
	==Crystal Structure of Response Regulator ChrA in Heme-Sensing Two Component System==		==Crystal Structure of Response Regulator ChrA in Heme-Sensing Two Component System==
	<StructureSection load='4yn8' size='340' side='right' caption='[[4yn8]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='4yn8' size='340' side='right' caption='[[4yn8]], [[Resolution\|resolution]] 1.80Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[4yn8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YN8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YN8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4yn8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YN8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YN8 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yn8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yn8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4yn8 RCSB], [http://www.ebi.ac.uk/pdbsum/4yn8 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yn8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yn8 OCA], [http://pdbe.org/4yn8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yn8 RCSB], [http://www.ebi.ac.uk/pdbsum/4yn8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yn8 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 14:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4yn8" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:14, 20 August 2015

2015-08-20T12:14:59Z

←Older revision		Revision as of 12:14, 20 August 2015
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	==Crystal Structure of Response Regulator ChrA in Heme-Sensing Two Component System==
		+	<StructureSection load='4yn8' size='340' side='right' caption='[[4yn8]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4yn8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YN8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YN8 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yn8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yn8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4yn8 RCSB], [http://www.ebi.ac.uk/pdbsum/4yn8 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	ChrA is a response regulator (RR) in the two-component system involved in regulating the degradation and transport of haem (Fe-porphyrin) in the pathogen Corynebacterium diphtheriae. Here, the crystal structure of full-length ChrA is described at a resolution of 1.8 A. ChrA consists of an N-terminal regulatory domain, a long linker region and a C-terminal DNA-binding domain. A structural comparison of ChrA with other RRs revealed substantial differences in the relative orientation of the two domains and the conformation of the linker region. The structural flexibility of the linker could be an important feature in rearrangement of the domain orientation to create a dimerization interface to bind DNA during haem-sensing signal transduction.

-	~~The entry 4yn8 is ON HOLD until Paper Publication~~	+	Structure of the response regulator ChrA in the haem-sensing two-component system of Corynebacterium diphtheriae.,Doi A, Nakamura H, Shiro Y, Sugimoto H Acta Crystallogr F Struct Biol Commun. 2015 Aug 1;71(Pt 8):966-71. doi:, 10.1107/S2053230X15009838. Epub 2015 Jul 29. PMID:26249683<ref>PMID:26249683</ref>

-	~~Authors: Doi~~, A.~~, Nakamura, H~~.~~, Shiro, Y., Sugimoto, H~~.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description~~:	+	== References ==
-	[[Category: ~~Unreleased Structures~~]]	+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Doi, A]]
		+	[[Category: Nakamura, H]]
	[[Category: Shiro, Y]]		[[Category: Shiro, Y]]
	[[Category: Sugimoto, H]]		[[Category: Sugimoto, H]]
-	[[Category: ~~Doi, A~~]]	+	[[Category: Dna binding protein]]
-	[[Category: ~~Nakamura, H~~]]	+	[[Category: Dna-binding]]
		+	[[Category: Helix-turn-helix]]

OCA at 11:50, 8 July 2015

2015-07-08T11:50:40Z

←Older revision		Revision as of 11:50, 8 July 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4yn8 is ON HOLD	+	The entry 4yn8 is ON HOLD until Paper Publication

	Authors: Doi, A., Nakamura, H., Shiro, Y., Sugimoto, H.		Authors: Doi, A., Nakamura, H., Shiro, Y., Sugimoto, H.

OCA at 12:35, 26 March 2015

2015-03-26T12:35:59Z

←Older revision		Revision as of 12:35, 26 March 2015
Line 3:		Line 3:
	The entry 4yn8 is ON HOLD		The entry 4yn8 is ON HOLD

-	Authors: ~~AKihiro,~~ Doi, ~~Hiro~~, Nakamura, Shiro, ~~Yoshitsugu~~, Sugimoto, ~~Hiroshi~~	+	Authors: Doi, A., Nakamura, H., Shiro, Y., Sugimoto, H.

	Description:		Description:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: ~~Akihiro~~, Doi, ~~Hiro,~~ Nakamura, ~~Shiro, Yoshitsugu, Sugimoto, Hiroshi~~]]	+	[[Category: Shiro, Y]]
		+	[[Category: Sugimoto, H]]
		+	[[Category: Doi, A]]
		+	[[Category: Nakamura, H]]

OCA: Protected "4yn8" [edit=sysop:move=sysop]

2015-03-18T10:53:51Z

Protected "4yn8" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:53, 18 March 2015

OCA: New page: '''Unreleased structure''' The entry 4yn8 is ON HOLD Authors: AKihiro, Doi, Hiro, Nakamura, Shiro, Yoshitsugu, Sugimoto, Hiroshi Description: Category: Unreleased Structures [[Cat...

2015-03-18T10:53:50Z

New page: '''Unreleased structure''' The entry 4yn8 is ON HOLD Authors: AKihiro, Doi, Hiro, Nakamura, Shiro, Yoshitsugu, Sugimoto, Hiroshi Description: Category: Unreleased Structures [[Cat...

New page

'''Unreleased structure'''

The entry 4yn8 is ON HOLD

Authors: AKihiro, Doi, Hiro, Nakamura, Shiro, Yoshitsugu, Sugimoto, Hiroshi

Description:
[[Category: Unreleased Structures]]
[[Category: Akihiro, Doi, Hiro, Nakamura, Shiro, Yoshitsugu, Sugimoto, Hiroshi]]