4yop - Revision history

OCA at 10:02, 6 September 2023

2023-09-06T10:02:16Z

←Older revision		Revision as of 10:02, 6 September 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4yop]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YOP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YOP FirstGlance]. <br>		<table><tr><td colspan='2'>[[4yop]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YOP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YOP FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yop OCA], [https://pdbe.org/4yop PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yop RCSB], [https://www.ebi.ac.uk/pdbsum/4yop PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yop ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yop OCA], [https://pdbe.org/4yop PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yop RCSB], [https://www.ebi.ac.uk/pdbsum/4yop PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yop ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:23, 3 May 2023

2023-05-03T08:23:14Z

←Older revision		Revision as of 08:23, 3 May 2023
Line 3:		Line 3:
	<StructureSection load='4yop' size='340' side='right'caption='[[4yop]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='4yop' size='340' side='right'caption='[[4yop]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4yop]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YOP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4YOP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4yop]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YOP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YOP FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yop OCA], [https://pdbe.org/4yop PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yop RCSB], [https://www.ebi.ac.uk/pdbsum/4yop PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yop ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4yop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yop OCA], [~~http~~://pdbe.org/4yop PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4yop RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4yop PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4yop ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>	+	[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Nakane T]]
-	[[Category: Nakane, T]]	+	[[Category: Nango E]]
-	[[Category: Nango, E]]	+	[[Category: Sugahara M]]
-	[[Category: Sugahara, M]]	+	[[Category: Suzuki M]]
-	[[Category: Suzuki, M]]	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Serial femtosecond crystallography~~]]	+

OCA at 07:47, 4 March 2020

2020-03-04T07:47:47Z

←Older revision		Revision as of 07:47, 4 March 2020
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME==		==CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME==
-	<StructureSection load='4yop' size='340' side='right' caption='[[4yop]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='4yop' size='340' side='right'caption='[[4yop]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4yop]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YOP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YOP FirstGlance]. <br>		<table><tr><td colspan='2'>[[4yop]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YOP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YOP FirstGlance]. <br>
Line 19:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 4yop" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4yop" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 24:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Nakane, T]]		[[Category: Nakane, T]]

OCA at 20:24, 24 January 2018

2018-01-24T20:24:18Z

←Older revision		Revision as of 20:24, 24 January 2018
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME==		==CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME==
	<StructureSection load='4yop' size='340' side='right' caption='[[4yop]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='4yop' size='340' side='right' caption='[[4yop]], [[Resolution\|resolution]] 2.10Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yop OCA], [http://pdbe.org/4yop PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yop RCSB], [http://www.ebi.ac.uk/pdbsum/4yop PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yop OCA], [http://pdbe.org/4yop PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yop RCSB], [http://www.ebi.ac.uk/pdbsum/4yop PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yop ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 12:38, 23 December 2015

2015-12-23T12:38:54Z

←Older revision		Revision as of 12:38, 23 December 2015
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	==CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME==
		+	<StructureSection load='4yop' size='340' side='right' caption='[[4yop]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4yop]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YOP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YOP FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yop OCA], [http://pdbe.org/4yop PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yop RCSB], [http://www.ebi.ac.uk/pdbsum/4yop PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Serial femtosecond crystallography (SFX) allows structures to be determined with minimal radiation damage. However, phasing native crystals in SFX is not very common. Here, the structure determination of native lysozyme from single-wavelength anomalous diffraction (SAD) by utilizing the anomalous signal of sulfur and chlorine at a wavelength of 1.77 A is successfully demonstrated. This sulfur SAD method can be applied to a wide range of proteins, which will improve the determination of native crystal structures.

-	~~The entry 4yop is ON HOLD until Paper Publication~~	+	Native sulfur/chlorine SAD phasing for serial femtosecond crystallography.,Nakane T, Song C, Suzuki M, Nango E, Kobayashi J, Masuda T, Inoue S, Mizohata E, Nakatsu T, Tanaka T, Tanaka R, Shimamura T, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Nureki O, Iwata S, Sugahara M Acta Crystallogr D Biol Crystallogr. 2015 Dec 1;71(Pt 12):2519-25. doi:, 10.1107/S139900471501857X. Epub 2015 Nov 27. PMID:26627659<ref>PMID:26627659</ref>

-	~~Authors: Sugahara~~, M.~~, Nakane, T~~.~~, Suzuki, M., Nango, E~~.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description: CRYSTAL STRUCTURE OF HEN EGG~~-~~WHITE LYSOZYME~~	+	<div class="pdbe-citations 4yop" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Unreleased Structures~~]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Gallus gallus]]
		+	[[Category: Lysozyme]]
		+	[[Category: Nakane, T]]
	[[Category: Nango, E]]		[[Category: Nango, E]]
-	[[Category: ~~Nakane~~, T]]	+	[[Category: Sugahara, M]]
	[[Category: Suzuki, M]]		[[Category: Suzuki, M]]
-	[[Category: ~~Sugahara, M~~]]	+	[[Category: Hydrolase]]
		+	[[Category: Serial femtosecond crystallography]]

OCA at 23:40, 30 November 2015

2015-11-30T23:40:35Z

←Older revision		Revision as of 23:40, 30 November 2015
Line 7:		Line 7:
	Description: CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME		Description: CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Suzuki, M]]
-	[[Category: Sugahara, M]]
	[[Category: Nango, E]]		[[Category: Nango, E]]
	[[Category: Nakane, T]]		[[Category: Nakane, T]]
		+	[[Category: Suzuki, M]]
		+	[[Category: Sugahara, M]]

OCA at 10:05, 30 September 2015

2015-09-30T10:05:17Z

←Older revision		Revision as of 10:05, 30 September 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4yop is ON HOLD	+	The entry 4yop is ON HOLD until Paper Publication

	Authors: Sugahara, M., Nakane, T., Suzuki, M., Nango, E.		Authors: Sugahara, M., Nakane, T., Suzuki, M., Nango, E.

OCA: Protected "4yop" [edit=sysop:move=sysop]

2015-03-18T10:58:25Z

Protected "4yop" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:58, 18 March 2015

OCA: New page: '''Unreleased structure''' The entry 4yop is ON HOLD Authors: Sugahara, M., Nakane, T., Suzuki, M., Nango, E. Description: CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME [[Category: Unrel...

2015-03-18T10:58:23Z

New page: '''Unreleased structure''' The entry 4yop is ON HOLD Authors: Sugahara, M., Nakane, T., Suzuki, M., Nango, E. Description: CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME [[Category: Unrel...

New page

'''Unreleased structure'''

The entry 4yop is ON HOLD

Authors: Sugahara, M., Nakane, T., Suzuki, M., Nango, E.

Description: CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
[[Category: Unreleased Structures]]
[[Category: Suzuki, M]]
[[Category: Sugahara, M]]
[[Category: Nango, E]]
[[Category: Nakane, T]]