4yx1 - Revision history

OCA at 07:29, 10 May 2023

2023-05-10T07:29:40Z

←Older revision		Revision as of 07:29, 10 May 2023
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	==SpaO(SPOA2)==		==SpaO(SPOA2)==
-	<StructureSection load='4yx1' size='340' side='right' caption='[[4yx1]], [[Resolution\|resolution]] 1.35Å' scene=''>	+	<StructureSection load='4yx1' size='340' side='right'caption='[[4yx1]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4yx1]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Salty Salty~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YX1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4YX1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4yx1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YX1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YX1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yx1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yx1 OCA], [https://pdbe.org/4yx1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yx1 RCSB], [https://www.ebi.ac.uk/pdbsum/4yx1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yx1 ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spaO, STM2891 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4yx1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yx1 OCA], [~~http~~://pdbe.org/4yx1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4yx1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4yx1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4yx1 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/SPAO_SALTY SPAO_SALTY]] Involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells.	+	[https://www.uniprot.org/uniprot/SPAO_SALTY SPAO_SALTY] Involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Salty~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Notti, R Q~~]]	+	[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
-	[[Category: ~~Stebbins, C E~~]]	+	[[Category: Notti RQ]]
-	[[Category: ~~Protein transport]]~~	+	[[Category: Stebbins CE]]
-	~~[[Category: Type iii secretion system~~]]	+

OCA at 09:41, 22 November 2017

2017-11-22T09:41:41Z

←Older revision		Revision as of 09:41, 22 November 2017
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	<StructureSection load='4yx1' size='340' side='right' caption='[[4yx1]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='4yx1' size='340' side='right' caption='[[4yx1]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4yx1]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YX1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YX1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4yx1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salty Salty]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YX1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YX1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spaO, STM2891 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yx1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yx1 OCA], [http://pdbe.org/4yx1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yx1 RCSB], [http://www.ebi.ac.uk/pdbsum/4yx1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yx1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yx1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yx1 OCA], [http://pdbe.org/4yx1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yx1 RCSB], [http://www.ebi.ac.uk/pdbsum/4yx1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yx1 ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Salty]]
	[[Category: Notti, R Q]]		[[Category: Notti, R Q]]
	[[Category: Stebbins, C E]]		[[Category: Stebbins, C E]]
	[[Category: Protein transport]]		[[Category: Protein transport]]
	[[Category: Type iii secretion system]]		[[Category: Type iii secretion system]]

OCA at 10:02, 10 March 2017

2017-03-10T10:02:11Z

←Older revision		Revision as of 10:02, 10 March 2017
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		+
	==SpaO(SPOA2)==		==SpaO(SPOA2)==
	<StructureSection load='4yx1' size='340' side='right' caption='[[4yx1]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='4yx1' size='340' side='right' caption='[[4yx1]], [[Resolution\|resolution]] 1.35Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yx1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yx1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4yx1 RCSB], [http://www.ebi.ac.uk/pdbsum/4yx1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yx1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yx1 OCA], [http://pdbe.org/4yx1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yx1 RCSB], [http://www.ebi.ac.uk/pdbsum/4yx1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yx1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4yx1" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:40, 3 June 2015

2015-06-03T12:40:29Z

←Older revision		Revision as of 12:40, 3 June 2015
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	==SpaO(SPOA2)==
		+	<StructureSection load='4yx1' size='340' side='right' caption='[[4yx1]], [[Resolution\|resolution]] 1.35Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4yx1]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YX1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YX1 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yx1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yx1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4yx1 RCSB], [http://www.ebi.ac.uk/pdbsum/4yx1 PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/SPAO_SALTY SPAO_SALTY]] Involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Translocating proteins across the double membrane of Gram-negative bacteria, type III secretion systems (T3SS) occur in two evolutionarily related forms: injectisomes, delivering virulence factors into host cells, and the flagellar system, secreting the polymeric filament used for motility. While both systems share related elements of a cytoplasmic sorting platform that facilitates the hierarchical secretion of protein substrates, its assembly and regulation remain unclear. Here we describe a module mediating the assembly of the sorting platform in both secretion systems, and elucidate the structural basis for segregation of homologous components among these divergent T3SS subtypes sharing a common cytoplasmic milieu. These results provide a foundation for the subtype-specific assembly of T3SS sorting platforms and will support further mechanistic analysis and anti-virulence drug design.

-	~~The entry 4yx1 is ON HOLD until Paper Publication~~	+	A common assembly module in injectisome and flagellar type III secretion sorting platforms.,Notti RQ, Bhattacharya S, Lilic M, Stebbins CE Nat Commun. 2015 May 21;6:7125. doi: 10.1038/ncomms8125. PMID:25994170<ref>PMID:25994170</ref>

-	~~Authors: Notti~~, R.Q.~~, Stebbins, C.E~~.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description:~~	+	== References ==
-	[[Category: ~~Unreleased Structures~~]]	+	<references/>
-	[[Category: Stebbins, C.E]]	+	__TOC__
-	[[Category: ~~Notti, R.Q~~]]	+	</StructureSection>
		+	[[Category: Notti, R Q]]
		+	[[Category: Stebbins, C E]]
		+	[[Category: Protein transport]]
		+	[[Category: Type iii secretion system]]

OCA: Protected "4yx1" [edit=sysop:move=sysop]

2015-04-01T11:59:42Z

Protected "4yx1" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:59, 1 April 2015

OCA: New page: '''Unreleased structure''' The entry 4yx1 is ON HOLD until Paper Publication Authors: Notti, R.Q., Stebbins, C.E. Description: Category: Unreleased Structures [[Category: Stebbins...

2015-04-01T11:59:40Z

New page: '''Unreleased structure''' The entry 4yx1 is ON HOLD until Paper Publication Authors: Notti, R.Q., Stebbins, C.E. Description: Category: Unreleased Structures [[Category: Stebbins...

New page

'''Unreleased structure'''

The entry 4yx1 is ON HOLD until Paper Publication

Authors: Notti, R.Q., Stebbins, C.E.

Description:
[[Category: Unreleased Structures]]
[[Category: Stebbins, C.E]]
[[Category: Notti, R.Q]]