5ck6 - Revision history

OCA at 16:09, 8 November 2023

2023-11-08T16:09:58Z

←Older revision		Revision as of 16:09, 8 November 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5ck6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CK6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CK6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[5ck6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CK6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CK6 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3ZS:(1R,5S)-6-OXABICYCLO[3.1.0]HEXANE'>3ZS</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3ZS:(1R,5S)-6-OXABICYCLO[3.1.0]HEXANE'>3ZS</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ck6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ck6 OCA], [https://pdbe.org/5ck6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ck6 RCSB], [https://www.ebi.ac.uk/pdbsum/5ck6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ck6 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ck6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ck6 OCA], [https://pdbe.org/5ck6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ck6 RCSB], [https://www.ebi.ac.uk/pdbsum/5ck6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ck6 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 12:10, 14 June 2023

2023-06-14T12:10:41Z

←Older revision		Revision as of 12:10, 14 June 2023
Line 3:		Line 3:
	<StructureSection load='5ck6' size='340' side='right'caption='[[5ck6]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='5ck6' size='340' side='right'caption='[[5ck6]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5ck6]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"mycobacterium_erythropolis"_gray_and_thornton_1928 "mycobacterium~~ erythropolis~~" gray and thornton 1928~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CK6 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5CK6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5ck6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CK6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CK6 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3ZS:(1R,5S)-6-OXABICYCLO[3.1.0]HEXANE'>3ZS</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3ZS:(1R,5S)-6-OXABICYCLO[3.1.0]HEXANE'>3ZS</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">limA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1833 "Mycobacterium erythropolis" Gray and Thornton 1928])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ck6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ck6 OCA], [https://pdbe.org/5ck6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ck6 RCSB], [https://www.ebi.ac.uk/pdbsum/5ck6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ck6 ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Limonene-1,2-epoxide_hydrolase Limonene-1,2-epoxide hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.3.2.8 3.3.2.8] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ck6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ck6 OCA], [~~http~~://pdbe.org/5ck6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5ck6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5ck6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5ck6 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LIMA_RHOER LIMA_RHOER]] Catalyzes the conversion of limonene-1,2-epoxide to limonene-1,2-diol. Can use both the (-) and (+) isomers of limonene-1,2-epoxide as substrates and also has some activity with 1-methylcyclohexene oxide, cyclohexene oxide and indene oxide as substrates.	+	[https://www.uniprot.org/uniprot/LIMA_RHOER LIMA_RHOER] Catalyzes the conversion of limonene-1,2-epoxide to limonene-1,2-diol. Can use both the (-) and (+) isomers of limonene-1,2-epoxide as substrates and also has some activity with 1-methylcyclohexene oxide, cyclohexene oxide and indene oxide as substrates.

	==See Also==		==See Also==
Line 16:		Line 14:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Mycobacterium erythropolis gray and thornton 1928]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Limonene-1,2-epoxide hydrolase~~]]	+	[[Category: Rhodococcus erythropolis]]
-	[[Category: Reetz~~, M T~~]]	+	[[Category: Reetz MT]]
-	[[Category: Sun~~, Z T~~]]	+	[[Category: Sun ZT]]
-	[[Category: Wu, L]]	+	[[Category: Wu L]]
-	[[Category: Zhou~~, J H]]~~	+	[[Category: Zhou JH]]
-	~~[[Category: Cyclopentene oxide]]~~	+
-	~~[[Category: Epoxide hydrolase]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 11:42, 27 March 2020

2020-03-27T11:42:03Z

←Older revision		Revision as of 11:42, 27 March 2020
Line 1:		Line 1:

	==Crystal structure of SZ348 in complex with cyclopentene oxide==		==Crystal structure of SZ348 in complex with cyclopentene oxide==
-	<StructureSection load='5ck6' size='340' side='right' caption='[[5ck6]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='5ck6' size='340' side='right'caption='[[5ck6]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5ck6]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CK6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CK6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5ck6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"mycobacterium_erythropolis"_gray_and_thornton_1928 "mycobacterium erythropolis" gray and thornton 1928]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CK6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CK6 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3ZS:(1R,5S)-6-OXABICYCLO[3.1.0]HEXANE'>3ZS</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3ZS:(1R,5S)-6-OXABICYCLO[3.1.0]HEXANE'>3ZS</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">limA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1833 "Mycobacterium erythropolis" Gray and Thornton 1928])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Limonene-1,2-epoxide_hydrolase Limonene-1,2-epoxide hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.3.2.8 3.3.2.8] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Limonene-1,2-epoxide_hydrolase Limonene-1,2-epoxide hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.3.2.8 3.3.2.8] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ck6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ck6 OCA], [http://pdbe.org/5ck6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ck6 RCSB], [http://www.ebi.ac.uk/pdbsum/5ck6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ck6 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ck6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ck6 OCA], [http://pdbe.org/5ck6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ck6 RCSB], [http://www.ebi.ac.uk/pdbsum/5ck6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ck6 ProSAT]</span></td></tr>
Line 10:		Line 11:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/LIMA_RHOER LIMA_RHOER]] Catalyzes the conversion of limonene-1,2-epoxide to limonene-1,2-diol. Can use both the (-) and (+) isomers of limonene-1,2-epoxide as substrates and also has some activity with 1-methylcyclohexene oxide, cyclohexene oxide and indene oxide as substrates.		[[http://www.uniprot.org/uniprot/LIMA_RHOER LIMA_RHOER]] Catalyzes the conversion of limonene-1,2-epoxide to limonene-1,2-diol. Can use both the (-) and (+) isomers of limonene-1,2-epoxide as substrates and also has some activity with 1-methylcyclohexene oxide, cyclohexene oxide and indene oxide as substrates.
		+
		+	==See Also==
		+	*[[Epoxide hydrolase 3D structures\|Epoxide hydrolase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Mycobacterium erythropolis gray and thornton 1928]]
		+	[[Category: Large Structures]]
	[[Category: Limonene-1,2-epoxide hydrolase]]		[[Category: Limonene-1,2-epoxide hydrolase]]
	[[Category: Reetz, M T]]		[[Category: Reetz, M T]]

OCA at 15:28, 26 July 2016

2016-07-26T15:28:08Z

←Older revision		Revision as of 15:28, 26 July 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5ck6 ~~is ON HOLD until Jul 15 2017~~	+	==Crystal structure of SZ348 in complex with cyclopentene oxide==
-		+	<StructureSection load='5ck6' size='340' side='right' caption='[[5ck6]], [[Resolution\|resolution]] 2.50Å' scene=''>
-	~~Authors~~: Wu, L., ~~Sun~~, Z.T., ~~Reetz~~, M.T., ~~Zhou~~, J.H.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5ck6]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CK6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CK6 FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure~~ of ~~SZ348 in complex~~ with ~~cyclopentene~~ oxide	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3ZS:(1R,5S)-6-OXABICYCLO[3.1.0]HEXANE'>3ZS</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Limonene-1,2-epoxide_hydrolase Limonene-1,2-epoxide hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.3.2.8 3.3.2.8] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ck6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ck6 OCA], [http://pdbe.org/5ck6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ck6 RCSB], [http://www.ebi.ac.uk/pdbsum/5ck6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ck6 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LIMA_RHOER LIMA_RHOER]] Catalyzes the conversion of limonene-1,2-epoxide to limonene-1,2-diol. Can use both the (-) and (+) isomers of limonene-1,2-epoxide as substrates and also has some activity with 1-methylcyclohexene oxide, cyclohexene oxide and indene oxide as substrates.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Limonene-1,2-epoxide hydrolase]]
		+	[[Category: Reetz, M T]]
		+	[[Category: Sun, Z T]]
	[[Category: Wu, L]]		[[Category: Wu, L]]
-	[[Category: ~~Reetz~~, ~~M.T~~]]	+	[[Category: Zhou, J H]]
-	[[Category: ~~Zhou, J.H~~]]	+	[[Category: Cyclopentene oxide]]
-	[[Category: ~~Sun, Z.T~~]]	+	[[Category: Epoxide hydrolase]]
		+	[[Category: Hydrolase]]

OCA at 10:34, 16 December 2015

2015-12-16T10:34:59Z

←Older revision		Revision as of 10:34, 16 December 2015
Line 8:		Line 8:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Wu, L]]		[[Category: Wu, L]]
-	[[Category: Zhou, J.H]]
	[[Category: Reetz, M.T]]		[[Category: Reetz, M.T]]
		+	[[Category: Zhou, J.H]]
	[[Category: Sun, Z.T]]		[[Category: Sun, Z.T]]

OCA at 18:39, 5 August 2015

2015-08-05T18:39:03Z

←Older revision		Revision as of 18:39, 5 August 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5ck6 is ON HOLD	+	The entry 5ck6 is ON HOLD until Jul 15 2017

	Authors: Wu, L., Sun, Z.T., Reetz, M.T., Zhou, J.H.		Authors: Wu, L., Sun, Z.T., Reetz, M.T., Zhou, J.H.

OCA at 13:30, 29 July 2015

2015-07-29T13:30:10Z

←Older revision		Revision as of 13:30, 29 July 2015
Line 5:		Line 5:
	Authors: Wu, L., Sun, Z.T., Reetz, M.T., Zhou, J.H.		Authors: Wu, L., Sun, Z.T., Reetz, M.T., Zhou, J.H.

-	Description: ~~crystal~~ structure of SZ348 in complex with cyclopentene oxide	+	Description: Crystal structure of SZ348 in complex with cyclopentene oxide
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Wu, L]]		[[Category: Wu, L]]

OCA: Protected "5ck6" [edit=sysop:move=sysop]

2015-07-22T13:14:56Z

Protected "5ck6" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:14, 22 July 2015

OCA: New page: '''Unreleased structure''' The entry 5ck6 is ON HOLD Authors: Wu, L., Sun, Z.T., Reetz, M.T., Zhou, J.H. Description: crystal structure of SZ348 in complex with cyclopentene oxide [[Ca...

2015-07-22T13:14:54Z

New page: '''Unreleased structure''' The entry 5ck6 is ON HOLD Authors: Wu, L., Sun, Z.T., Reetz, M.T., Zhou, J.H. Description: crystal structure of SZ348 in complex with cyclopentene oxide [[Ca...

New page

'''Unreleased structure'''

The entry 5ck6 is ON HOLD

Authors: Wu, L., Sun, Z.T., Reetz, M.T., Zhou, J.H.

Description: crystal structure of SZ348 in complex with cyclopentene oxide
[[Category: Unreleased Structures]]
[[Category: Wu, L]]
[[Category: Zhou, J.H]]
[[Category: Reetz, M.T]]
[[Category: Sun, Z.T]]