5eji - Revision history

OCA at 06:30, 5 July 2023

2023-07-05T06:30:44Z

←Older revision		Revision as of 06:30, 5 July 2023
Line 3:		Line 3:
	<StructureSection load='5eji' size='340' side='right'caption='[[5eji]], [[Resolution\|resolution]] 2.29Å' scene=''>		<StructureSection load='5eji' size='340' side='right'caption='[[5eji]], [[Resolution\|resolution]] 2.29Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5eji]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacterium_monocytogenes_hominis"_nyfeldt_1932 "bacterium~~ monocytogenes ~~hominis" nyfeldt 1932~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EJI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5EJI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5eji]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes Listeria monocytogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EJI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5EJI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.292Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nadK1, lmo0968 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1639 "Bacterium monocytogenes hominis" Nyfeldt 1932])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/NAD(+)_kinase NAD(+) kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.23 2.7.1.23] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5eji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eji OCA], [https://pdbe.org/5eji PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5eji RCSB], [https://www.ebi.ac.uk/pdbsum/5eji PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5eji ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5eji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eji OCA], [~~http~~://pdbe.org/5eji PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5eji RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5eji PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5eji ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/NADK1_LISMO NADK1_LISMO]] Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.[HAMAP-Rule:MF_00361]<ref>PMID:17686780</ref> <ref>PMID:22608967</ref>	+	[https://www.uniprot.org/uniprot/NADK1_LISMO NADK1_LISMO] Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.[HAMAP-Rule:MF_00361]<ref>PMID:17686780</ref> <ref>PMID:22608967</ref>

	==See Also==		==See Also==
Line 18:		Line 17:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacterium monocytogenes hominis nyfeldt 1932]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Assairi, L]]	+	[[Category: Listeria monocytogenes]]
-	[[Category: Gelin, M]]	+	[[Category: Assairi L]]
-	[[Category: Labesse, G]]	+	[[Category: Gelin M]]
-	[[Category: Pochet, S]]	+	[[Category: Labesse G]]
-	[[Category: Poncet-Montange, G]]	+	[[Category: Pochet S]]
-	~~[[Category: Allostery]]~~	+	[[Category: Poncet-Montange G]]
-	~~[[Category: Citrate]]~~	+
-	~~[[Category: Gram-positive nad kinase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 07:01, 22 April 2020

2020-04-22T07:01:25Z

←Older revision		Revision as of 07:01, 22 April 2020
Line 1:		Line 1:

	==Crystal structure of NAD kinase W78F mutant from Listeria monocytogenes in complex with NADP/Mn++/PPi==		==Crystal structure of NAD kinase W78F mutant from Listeria monocytogenes in complex with NADP/Mn++/PPi==
-	<StructureSection load='5eji' size='340' side='right' caption='[[5eji]], [[Resolution\|resolution]] 2.29Å' scene=''>	+	<StructureSection load='5eji' size='340' side='right'caption='[[5eji]], [[Resolution\|resolution]] 2.29Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5eji]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EJI OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5EJI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5eji]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_monocytogenes_hominis"_nyfeldt_1932 "bacterium monocytogenes hominis" nyfeldt 1932]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EJI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5EJI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nadK1, lmo0968 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1639 "Bacterium monocytogenes hominis" Nyfeldt 1932])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/NAD(+)_kinase NAD(+) kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.23 2.7.1.23] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/NAD(+)_kinase NAD(+) kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.23 2.7.1.23] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5eji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eji OCA], [http://pdbe.org/5eji PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5eji RCSB], [http://www.ebi.ac.uk/pdbsum/5eji PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5eji ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5eji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eji OCA], [http://pdbe.org/5eji PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5eji RCSB], [http://www.ebi.ac.uk/pdbsum/5eji PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5eji ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/NADK1_LISMO NADK1_LISMO]] Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.[HAMAP-Rule:MF_00361]<ref>PMID:17686780</ref> <ref>PMID:22608967</ref>		[[http://www.uniprot.org/uniprot/NADK1_LISMO NADK1_LISMO]] Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.[HAMAP-Rule:MF_00361]<ref>PMID:17686780</ref> <ref>PMID:22608967</ref>
		+
		+	==See Also==
		+	*[[NAD kinase\|NAD kinase]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacterium monocytogenes hominis nyfeldt 1932]]
		+	[[Category: Large Structures]]
	[[Category: Assairi, L]]		[[Category: Assairi, L]]
	[[Category: Gelin, M]]		[[Category: Gelin, M]]

OCA at 19:45, 9 December 2016

2016-12-09T19:45:54Z

←Older revision		Revision as of 19:45, 9 December 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5eji ~~is ON HOLD until Paper Publication~~	+	==Crystal structure of NAD kinase W78F mutant from Listeria monocytogenes in complex with NADP/Mn++/PPi==
-		+	<StructureSection load='5eji' size='340' side='right' caption='[[5eji]], [[Resolution\|resolution]] 2.29Å' scene=''>
-	~~Authors~~: ~~Poncet~~-~~Montange, G~~., ~~Assairi~~, L., ~~Gelin~~, M., ~~Pochet~~, S., ~~Labesse~~, G.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5eji]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EJI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5EJI FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure~~ of NAD ~~kinase W78F mutant from Listeria monocytogenes~~ in ~~complex with~~ NADP/~~Mn++~~/~~PPi~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/NAD(+)_kinase NAD(+) kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.23 2.7.1.23] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5eji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eji OCA], [http://pdbe.org/5eji PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5eji RCSB], [http://www.ebi.ac.uk/pdbsum/5eji PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5eji ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NADK1_LISMO NADK1_LISMO]] Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.[HAMAP-Rule:MF_00361]<ref>PMID:17686780</ref> <ref>PMID:22608967</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Assairi, L]]
		+	[[Category: Gelin, M]]
	[[Category: Labesse, G]]		[[Category: Labesse, G]]
	[[Category: Pochet, S]]		[[Category: Pochet, S]]
-	[[Category: Gelin, M]]
	[[Category: Poncet-Montange, G]]		[[Category: Poncet-Montange, G]]
-	[[Category: ~~Assairi, L~~]]	+	[[Category: Allostery]]
		+	[[Category: Citrate]]
		+	[[Category: Gram-positive nad kinase]]
		+	[[Category: Transferase]]

OCA at 10:47, 19 October 2016

2016-10-19T10:47:11Z

←Older revision		Revision as of 10:47, 19 October 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5eji is ON HOLD	+	The entry 5eji is ON HOLD until Paper Publication

	Authors: Poncet-Montange, G., Assairi, L., Gelin, M., Pochet, S., Labesse, G.		Authors: Poncet-Montange, G., Assairi, L., Gelin, M., Pochet, S., Labesse, G.

OCA: Protected "5eji" [edit=sysop:move=sysop]

2015-12-01T02:55:38Z

Protected "5eji" [edit=sysop:move=sysop]

←Older revision

Revision as of 02:55, 1 December 2015

OCA: New page: '''Unreleased structure''' The entry 5eji is ON HOLD Authors: Poncet-Montange, G., Assairi, L., Gelin, M., Pochet, S., Labesse, G. Description: Crystal structure of NAD kinase W78F mut...

2015-12-01T02:55:37Z

New page: '''Unreleased structure''' The entry 5eji is ON HOLD Authors: Poncet-Montange, G., Assairi, L., Gelin, M., Pochet, S., Labesse, G. Description: Crystal structure of NAD kinase W78F mut...

New page

'''Unreleased structure'''

The entry 5eji is ON HOLD

Authors: Poncet-Montange, G., Assairi, L., Gelin, M., Pochet, S., Labesse, G.

Description: Crystal structure of NAD kinase W78F mutant from Listeria monocytogenes in complex with NADP/Mn++/PPi
[[Category: Unreleased Structures]]
[[Category: Labesse, G]]
[[Category: Pochet, S]]
[[Category: Gelin, M]]
[[Category: Poncet-Montange, G]]
[[Category: Assairi, L]]