5fgx - Revision history

OCA at 06:50, 19 July 2023

2023-07-19T06:50:35Z

←Older revision		Revision as of 06:50, 19 July 2023
Line 3:		Line 3:
	<StructureSection load='5fgx' size='340' side='right'caption='[[5fgx]], [[Resolution\|resolution]] 2.13Å' scene=''>		<StructureSection load='5fgx' size='340' side='right'caption='[[5fgx]], [[Resolution\|resolution]] 2.13Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5fgx]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FGX OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5FGX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5fgx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FGX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FGX FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.134Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5fgx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fgx OCA], [~~http~~://pdbe.org/5fgx PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5fgx RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5fgx PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5fgx ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fgx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fgx OCA], [https://pdbe.org/5fgx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fgx RCSB], [https://www.ebi.ac.uk/pdbsum/5fgx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fgx ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/THM1_THADA THM1_THADA]] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.	+	[https://www.uniprot.org/uniprot/THM1_THADA THM1_THADA] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 25:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Thaumatococcus daniellii]]		[[Category: Thaumatococcus daniellii]]
-	[[Category: Aquila, A]]	+	[[Category: Aquila A]]
-	[[Category: Barends~~, T R.M~~]]	+	[[Category: Barends TRM]]
-	[[Category: Botha, S]]	+	[[Category: Botha S]]
-	[[Category: Boutet, S]]	+	[[Category: Boutet S]]
-	[[Category: Doak~~, R B~~]]	+	[[Category: Doak RB]]
-	[[Category: Foucar, L]]	+	[[Category: Foucar L]]
-	[[Category: Gorel, A]]	+	[[Category: Gorel A]]
-	[[Category: Koglin, J]]	+	[[Category: Koglin J]]
-	[[Category: Liang, M]]	+	[[Category: Liang M]]
-	[[Category: Meinhart, A]]	+	[[Category: Meinhart A]]
-	[[Category: Nass~~, K J~~]]	+	[[Category: Nass KJ]]
-	[[Category: Schlichting, I]]	+	[[Category: Schlichting I]]
-	[[Category: Shoeman~~, R L~~]]	+	[[Category: Shoeman RL]]
-	[[Category: Williams~~, G J]]~~	+	[[Category: Williams GJ]]
-	~~[[Category: Plant protein]]~~	+
-	~~[[Category: Sulphur sad]]~~	+
-	~~[[Category: Synchrotron~~]]	+

OCA at 07:18, 6 May 2020

2020-05-06T07:18:51Z

←Older revision		Revision as of 07:18, 6 May 2020
Line 1:		Line 1:

	==Thaumatin solved by native sulphur SAD using synchrotron radiation==		==Thaumatin solved by native sulphur SAD using synchrotron radiation==
-	<StructureSection load='5fgx' size='340' side='right' caption='[[5fgx]], [[Resolution\|resolution]] 2.13Å' scene=''>	+	<StructureSection load='5fgx' size='340' side='right'caption='[[5fgx]], [[Resolution\|resolution]] 2.13Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5fgx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FGX OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5FGX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5fgx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FGX OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5FGX FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5fgx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fgx OCA], [http://pdbe.org/5fgx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fgx RCSB], [http://www.ebi.ac.uk/pdbsum/5fgx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5fgx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fgx OCA], [http://pdbe.org/5fgx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fgx RCSB], [http://www.ebi.ac.uk/pdbsum/5fgx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fgx ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Thaumatococcus daniellii]]		[[Category: Thaumatococcus daniellii]]
	[[Category: Aquila, A]]		[[Category: Aquila, A]]

OCA at 15:23, 20 June 2016

2016-06-20T15:23:21Z

←Older revision		Revision as of 15:23, 20 June 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5fgx is ~~ON HOLD~~	+	==Thaumatin solved by native sulphur SAD using synchrotron radiation==
		+	<StructureSection load='5fgx' size='340' side='right' caption='[[5fgx]], [[Resolution\|resolution]] 2.13Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5fgx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FGX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FGX FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fgx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fgx OCA], [http://pdbe.org/5fgx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fgx RCSB], [http://www.ebi.ac.uk/pdbsum/5fgx PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/THM1_THADA THM1_THADA]] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Serial femtosecond crystallography (SFX) at X-ray free-electron lasers (XFELs) offers unprecedented possibilities for macromolecular structure determination of systems that are prone to radiation damage. However, phasing XFEL data de novo is complicated by the inherent inaccuracy of SFX data, and only a few successful examples, mostly based on exceedingly strong anomalous or isomorphous difference signals, have been reported. Here, it is shown that SFX data from thaumatin microcrystals can be successfully phased using only the weak anomalous scattering from the endogenous S atoms. Moreover, a step-by-step investigation is presented of the particular problems of SAD phasing of SFX data, analysing data from a derivative with a strong anomalous signal as well as the weak signal from endogenous S atoms.

-	~~Authors~~:	+	Protein structure determination by single-wavelength anomalous diffraction phasing of X-ray free-electron laser data.,Nass K, Meinhart A, Barends TR, Foucar L, Gorel A, Aquila A, Botha S, Doak RB, Koglin J, Liang M, Shoeman RL, Williams G, Boutet S, Schlichting I IUCrJ. 2016 Mar 9;3(Pt 3):180-91. doi: 10.1107/S2052252516002980. eCollection, 2016 May 1. PMID:27158504<ref>PMID:27158504</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5fgx" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Thaumatococcus daniellii]]
		+	[[Category: Aquila, A]]
		+	[[Category: Barends, T R.M]]
		+	[[Category: Botha, S]]
		+	[[Category: Boutet, S]]
		+	[[Category: Doak, R B]]
		+	[[Category: Foucar, L]]
		+	[[Category: Gorel, A]]
		+	[[Category: Koglin, J]]
		+	[[Category: Liang, M]]
		+	[[Category: Meinhart, A]]
		+	[[Category: Nass, K J]]
		+	[[Category: Schlichting, I]]
		+	[[Category: Shoeman, R L]]
		+	[[Category: Williams, G J]]
		+	[[Category: Plant protein]]
		+	[[Category: Sulphur sad]]
		+	[[Category: Synchrotron]]

OCA at 12:59, 15 May 2016

2016-05-15T12:59:51Z

←Older revision		Revision as of 12:59, 15 May 2016
Line 3:		Line 3:
	The entry 5fgx is ON HOLD		The entry 5fgx is ON HOLD

-	Authors: ~~Nass, K.J., Meinhart, A., Barends, T.R.M., Foucar, L., Gorel, A., Aquila, A., Botha, S., Doak, R.B., Koglin, J., Liang, M., Shoeman, R.L., Williams, G.J., Boutet, S., Schlichting, I.~~	+	Authors:

	Description:		Description:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Liang, M]]
-	[[Category: Shoeman, R.L]]
-	[[Category: Gorel, A]]
-	[[Category: Botha, S]]
-	[[Category: Barends, T.R.M]]
-	[[Category: Williams, G.J]]
-	[[Category: Aquila, A]]
-	[[Category: Boutet, S]]
-	[[Category: Foucar, L]]
-	[[Category: Meinhart, A]]
-	[[Category: Doak, R.B]]
-	[[Category: Schlichting, I]]
-	[[Category: Nass, K.J]]
-	[[Category: Koglin, J]]

OCA: Protected "5fgx" [edit=sysop:move=sysop]

2015-12-30T17:56:22Z

Protected "5fgx" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:56, 30 December 2015

OCA: New page: '''Unreleased structure''' The entry 5fgx is ON HOLD Authors: Nass, K.J., Meinhart, A., Barends, T.R.M., Foucar, L., Gorel, A., Aquila, A., Botha, S., Doak, R.B., Koglin, J., Liang, M.,...

2015-12-30T17:56:21Z

New page: '''Unreleased structure''' The entry 5fgx is ON HOLD Authors: Nass, K.J., Meinhart, A., Barends, T.R.M., Foucar, L., Gorel, A., Aquila, A., Botha, S., Doak, R.B., Koglin, J., Liang, M.,...

New page

'''Unreleased structure'''

The entry 5fgx is ON HOLD

Authors: Nass, K.J., Meinhart, A., Barends, T.R.M., Foucar, L., Gorel, A., Aquila, A., Botha, S., Doak, R.B., Koglin, J., Liang, M., Shoeman, R.L., Williams, G.J., Boutet, S., Schlichting, I.

Description:
[[Category: Unreleased Structures]]
[[Category: Liang, M]]
[[Category: Shoeman, R.L]]
[[Category: Gorel, A]]
[[Category: Botha, S]]
[[Category: Barends, T.R.M]]
[[Category: Williams, G.J]]
[[Category: Aquila, A]]
[[Category: Boutet, S]]
[[Category: Foucar, L]]
[[Category: Meinhart, A]]
[[Category: Doak, R.B]]
[[Category: Schlichting, I]]
[[Category: Nass, K.J]]
[[Category: Koglin, J]]